Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400007347 Solanum tuberosum HOM05D004725 ORTHO05D005683 1.5e-121 439.5 224 100.0
Solyc11g065900.2 Solanum lycopersicum HOM05D004725 ORTHO05D005683 5.9e-121 437.6 224 99.6
Sopen11g025640 Solanum pennellii HOM05D004725 ORTHO05D005683 5.9e-121 437.6 224 99.6
Nitab4.5_0000160g0190 Nicotiana tabacum HOM05D004725 ORTHO05D005683 1.9e-111 406.0 232 91.4
Peaxi162Scf00057g02232 Petunia axillaris HOM05D004725 ORTHO05D005683 2.0e-108 396.0 233 87.6
Nitab4.5_0002789g0040 Nicotiana tabacum HOM05D004725 ORTHO05D005683 6.1e-102 374.4 224 87.9
Oeu038772.1 Olea europaea HOM05D004725 ORTHO05D005683 5.2e-93 344.7 210 82.4
Cc00_g03440 Coffea canephora HOM05D004725 ORTHO05D005683 3.4e-92 342.0 219 79.0
Oeu001165.1 Olea europaea HOM05D004725 ORTHO05D005683 2.4e-90 335.9 248 72.6
MSTRG.3853 Avicennia marina HOM05D004725 ORTHO05D005683 2.0e-89 332.8 224 75.4
SGA_v2.0_scaffold157G37322 Striga asiatica HOM05D004725 ORTHO05D005683 7.7e-89 330.9 224 75.4
SalBow8G1743 Salvia bowleyana HOM05D004725 ORTHO05D005683 1.0e-88 330.5 224 75.0
Lj3A833G37 Lonicera japonica HOM05D004725 ORTHO05D005683 2.5e-87 325.9 225 74.7
Migut.G00073 Erythranthe guttata HOM05D004725 ORTHO05D005683 5.6e-87 324.7 224 74.6
DCAR_030461 Daucus carota HOM05D004725 ORTHO05D005683 2.1e-86 322.8 223 74.4
Lsat_1_v5_gn_8_139661 Lactuca sativa HOM05D004725 ORTHO05D005683 2.6e-84 315.8 225 71.1
CSS0037380 Camellia sinensis var. sinensis HOM05D004725 ORTHO05D005683 2.4e-82 309.3 225 72.0
Dinv15152 Davidia involucrata HOM05D004725 ORTHO05D005683 2.0e-81 306.2 204 75.0
Nn3g21748 Nelumbo nucifera HOM05D004725 ORTHO05D005683 3.5e-81 305.4 222 69.4
CAN.G598.3 Capsicum annuum HOM05D004725 ORTHO05D005683 7.8e-81 304.3 165 94.5
unitig_37.g12782 Utricularia gibba HOM05D004725 ORTHO05D005683 1.7e-80 303.1 224 68.8
GSVIVG01034975001 Vitis vinifera HOM05D004725 ORTHO05D005683 3.9e-80 302.0 222 71.6
HanXRQChr10g0291591 Helianthus annuus HOM05D004725 ORTHO05D005683 4.0e-77 292.0 211 70.1
TAR376G0735 Trochodendron aralioides HOM05D004725 ORTHO05D005683 4.0e-77 292.0 224 67.0
Aqoxy6G02121 Aquilegia oxysepala HOM05D004725 ORTHO05D005683 5.2e-77 291.6 206 71.8
Actinidia31555 Actinidia chinensis HOM05D004725 ORTHO05D005683 6.8e-77 291.2 227 68.7
HanXRQChr17g0554971 Helianthus annuus HOM05D004725 ORTHO05D005683 6.8e-77 291.2 211 70.1
ECA236G4776 Erigeron canadensis HOM05D004725 ORTHO05D005683 8.9e-77 290.8 225 66.7
SalBow6G0528 Salvia bowleyana HOM05D004725 ORTHO05D005683 1.1e-74 283.9 224 68.3
CDE02G0725 Ceratophyllum demersum HOM05D004725 ORTHO05D005683 2.0e-73 279.6 211 68.2
MBI18_g03518_MAGBIO Magnolia biondii HOM05D004725 ORTHO05D005683 6.0e-73 278.1 222 66.7
CiPaw.02G073900 Carya illinoinensis HOM05D004725 ORTHO05D005683 5.6e-71 271.6 218 62.8
CANSAT35G1772 Cannabis sativa HOM05D004725 ORTHO05D005683 7.3e-71 271.2 235 61.3
Sc25g0003230 Simmondsia chinensis HOM05D004725 ORTHO05D005683 1.6e-70 270.0 224 62.9
TPR.G27119 Trifolium pratense HOM05D004725 ORTHO05D005683 1.6e-70 270.0 228 61.0
Os05g0143400 Oryza sativa ssp. japonica HOM05D004725 ORTHO05D005683 1.4e-69 266.9 202 66.3
Lj3g0003769 Lotus japonicus HOM05D004725 ORTHO05D005683 2.3e-69 266.2 228 61.0
Glyma.08G194400 Glycine max HOM05D004725 ORTHO05D005683 3.1e-69 265.8 226 63.7
CSS0018454 Camellia sinensis var. sinensis HOM05D004725 ORTHO05D005683 5.2e-69 265.0 223 63.7
PSO782G1146 Papaver somniferum HOM05D004725 ORTHO05D005683 3.4e-68 262.3 226 63.3
Psat1g138600 Pisum sativum HOM05D004725 ORTHO05D005683 3.4e-68 262.3 219 61.2
Zm00001eb108600 Zea mays HOM05D004725 ORTHO05D005683 1.3e-67 260.4 203 63.5
Phvul.010G140100 Phaseolus vulgaris HOM05D004725 ORTHO05D005683 4.9e-67 258.5 223 60.5
PSO384G4206 Papaver somniferum HOM05D004725 ORTHO05D005683 4.1e-66 255.4 212 63.7
AL8G22680 Arabidopsis lyrata HOM05D004725 ORTHO05D005683 5.4e-66 255.0 221 59.7
VMungo0331G0107 Vigna mungo HOM05D004725 ORTHO05D005683 7.1e-66 254.6 223 61.0
PSO063G5877 Papaver somniferum HOM05D004725 ORTHO05D005683 9.2e-66 254.2 225 61.8
Carub.0008s0897 Capsella rubella HOM05D004725 ORTHO05D005683 2.7e-65 252.7 222 59.5
AT5G49010 Arabidopsis thaliana HOM05D004725 ORTHO05D005683 7.8e-65 251.1 221 58.8
SEGI_00745 Sequoiadendron giganteum HOM05D004725 ORTHO05D005683 1.7e-64 250.0 211 58.3
Carub.0008s0882 Capsella rubella HOM05D004725 ORTHO05D005683 3.9e-64 248.8 226 57.5
THA.LOC104827096 Tarenaya hassleriana HOM05D004725 ORTHO05D005683 3.9e-64 248.8 226 59.3
arahy.Tifrunner.gnm1.ann1.ASV3U0 Arachis hypogaea HOM05D004725 ORTHO05D005683 8.6e-64 247.7 257 54.1
CsaV3_3G008790 Cucumis sativus L. HOM05D004725 ORTHO05D005683 3.3e-63 245.7 229 55.5
Manes.03G206000 Manihot esculenta HOM05D004725 ORTHO05D005683 3.3e-63 245.7 216 60.2
QL06p012630 Quercus lobata HOM05D004725 ORTHO05D005683 3.3e-63 245.7 189 64.6
Ciclev10005849m.g Citrus clementina HOM05D004725 ORTHO05D005683 4.3e-63 245.4 223 58.3
ClCG05G001400 Citrullus lanatus HOM05D004725 ORTHO05D005683 1.6e-62 243.4 224 56.7
Potri.008G103800 Populus trichocarpa HOM05D004725 ORTHO05D005683 2.1e-62 243.0 220 59.1
AL8G22360 Arabidopsis lyrata HOM05D004725 ORTHO05D005683 4.7e-62 241.9 238 55.0
Sabra08G0078400 Salix brachista HOM05D004725 ORTHO05D005683 4.7e-62 241.9 220 58.2
Thhalv10004892m.g Eutrema salsugineum HOM05D004725 ORTHO05D005683 6.2e-62 241.5 211 57.8
CARHR056790 Cardamine hirsuta HOM05D004725 ORTHO05D005683 8.1e-62 241.1 212 59.4
Sed0009995 Sechium edule HOM05D004725 ORTHO05D005683 1.1e-61 240.7 224 56.2
vmacro08028 Vaccinium macrocarpon HOM05D004725 ORTHO05D005683 1.4e-61 240.4 240 58.3
RcHm_v2.0_Chr4g0425721 Rosa chinensis HOM05D004725 ORTHO05D005683 2.3e-61 239.6 235 53.6
Aa31LG11G8130 Aethionema arabicum HOM05D004725 ORTHO05D005683 4.0e-61 238.8 211 58.3
Eucgr.D00314 Eucalyptus grandis HOM05D004725 ORTHO05D005683 4.0e-61 238.8 228 54.4
FvH4_4g13700 Fragaria vesca HOM05D004725 ORTHO05D005683 4.0e-61 238.8 233 54.1
Sp2g19380 Schrenkiella parvula HOM05D004725 ORTHO05D005683 4.0e-61 238.8 211 57.8
Glyma.07G011200 Glycine max HOM05D004725 ORTHO05D005683 5.2e-61 238.4 210 61.0
Medtr2g044210 Medicago truncatula HOM05D004725 ORTHO05D005683 1.2e-60 237.3 190 62.1
FAN07G1636 Fragaria x ananassa HOM05D004725 ORTHO05D005683 4.9e-59 231.9 235 53.2
BolC7t44486H Brassica oleracea HOM05D004725 ORTHO05D005683 8.4e-59 231.1 211 56.4
C07p39630 Brassica napus HOM05D004725 ORTHO05D005683 3.2e-58 229.2 210 55.7
Gohir.A10G173400 Gossypium hirsutum HOM05D004725 ORTHO05D005683 3.2e-58 229.2 232 55.2
Gohir.D10G179900 Gossypium hirsutum HOM05D004725 ORTHO05D005683 9.2e-58 227.6 232 55.2
Thecc.04G302700 Theobroma cacao HOM05D004725 ORTHO05D005683 9.2e-58 227.6 232 55.2
GSVIVG01034912001 Vitis vinifera HOM05D004725 ORTHO05D005683 1.6e-57 226.9 204 62.3
A06p38630 Brassica napus HOM05D004725 ORTHO05D005683 2.1e-57 226.5 211 56.4
BraA06t26778Z Brassica rapa HOM05D004725 ORTHO05D005683 2.1e-57 226.5 211 56.4
Gorai.011G201500 Gossypium raimondii HOM05D004725 ORTHO05D005683 2.1e-57 226.5 233 55.4
Duzib212G0103 Durio zibethinus HOM05D004725 ORTHO05D005683 2.7e-57 226.1 218 56.0
COL.COLO4_09634 Corchorus olitorius HOM05D004725 ORTHO05D005683 4.6e-57 225.3 223 55.2
Rhsim05G0134600 Rhododendron simsii HOM05D004725 ORTHO05D005683 4.6e-57 225.3 307 46.3
Prupe.1G115500 Prunus persica HOM05D004725 ORTHO05D005683 7.8e-57 224.6 188 60.1
Ca_09654_v3 Cicer arietinum L. HOM05D004725 ORTHO05D005683 3.9e-56 222.2 199 59.3
Haze_01314 Corylus avellana HOM05D004725 ORTHO05D005683 3.9e-56 222.2 160 69.4
COL.COLO4_34597 Corchorus olitorius HOM05D004725 ORTHO05D005683 6.6e-56 221.5 183 62.8
ATR0691G022 Amborella trichopoda HOM05D004725 ORTHO05D005683 2.5e-55 219.5 170 67.1
Ah.13g071340 Amaranthus hybridus HOM05D004725 ORTHO05D005683 4.3e-55 218.8 217 53.9
MELO3C006096.2 Cucumis melo HOM05D004725 ORTHO05D005683 5.6e-55 218.4 244 49.2
FAN12G0808 Fragaria x ananassa HOM05D004725 ORTHO05D005683 9.6e-55 217.6 234 51.7
PGR031G0191 Punica granatum HOM05D004725 ORTHO05D005683 2.8e-54 216.1 227 50.7
arahy.Tifrunner.gnm1.ann1.NMZ4WG Arachis hypogaea HOM05D004725 ORTHO05D005683 1.4e-53 213.8 342 40.9
TWI09G0594 Tripterygium wilfordii HOM05D004725 ORTHO05D005683 1.4e-53 213.8 223 53.8
Dinv44275 Davidia involucrata HOM05D004725 ORTHO05D005683 1.8e-53 213.4 158 72.2
Rhsim04G0240300 Rhododendron simsii HOM05D004725 ORTHO05D005683 5.2e-53 211.8 266 50.0
SMO351G0117 Selaginella moellendorffii HOM05D004725 ORTHO05D005683 5.2e-53 211.8 209 51.7
Pp3c12_20580 Physcomitrium patens HOM05D004725 ORTHO05D005683 1.2e-52 210.7 229 49.8
BcaC06g30733 Brassica carinata HOM05D004725 ORTHO05D005683 7.6e-52 208.0 165 63.0
SHI00123 Sapria himalayana HOM05D004725 ORTHO05D005683 3.8e-51 205.7 216 51.4
Mapoly0029s0136 Marchantia polymorpha HOM05D004725 ORTHO05D005683 1.1e-50 204.1 222 49.1
CAN.G327.11 Capsicum annuum HOM05D004725 ORTHO05D005683 1.6e-49 200.3 165 67.9
AagrBONN_evm.TU.Sc2ySwM_228.2917 Anthoceros agrestis HOM05D004725 ORTHO05D005683 7.8e-49 198.0 215 48.4
HPP92_027744 Vanilla planifolia HOM05D004725 ORTHO05D005683 1.3e-48 197.2 189 56.1
AUR62039263 Chenopodium quinoa HOM05D004725 ORTHO05D005683 2.3e-48 196.4 226 47.8
MD13G1151200 Malus domestica HOM05D004725 ORTHO05D005683 1.1e-47 194.1 222 51.4
CARHR182700 Cardamine hirsuta HOM05D004725 ORTHO05D005683 2.8e-46 189.5 188 52.1
FAN12G0673 Fragaria x ananassa HOM05D004725 ORTHO05D005683 8.1e-46 188.0 261 43.7
Hma1.2p1_0013F.1_g008380 Hydrangea macrophylla HOM05D004725 ORTHO05D005683 1.8e-45 186.8 131 69.5
Atru.chr4.3042 Acer truncatum HOM05D004725 ORTHO05D005683 4.0e-45 185.7 138 68.1
BcaC06g30731 Brassica carinata HOM05D004725 ORTHO05D005683 1.3e-43 180.6 142 64.1
EL10Ac3g05524 Beta vulgaris HOM05D004725 ORTHO05D005683 3.2e-42 176.0 252 43.7
CBR_g34308 Chara braunii HOM05D004725 ORTHO05D005683 1.3e-40 170.6 213 39.9
Ca_02282_v3 Cicer arietinum L. HOM05D004725 ORTHO05D005683 8.7e-40 167.9 129 67.4
Lalb_Chr20g0110441 Lupinus albus HOM05D004725 ORTHO05D005683 1.9e-39 166.8 112 74.1
Cpa.g.sc9.42 Carica papaya HOM05D004725 ORTHO05D005683 2.8e-38 162.9 161 58.4
MD16G1152100 Malus domestica HOM05D004725 ORTHO05D005683 6.9e-37 158.3 164 54.9
HPP92_026068 Vanilla planifolia HOM05D004725 ORTHO05D005683 7.9e-33 144.8 117 59.8
FAN07G0549 Fragaria x ananassa HOM05D004725 ORTHO05D005683 1.5e-31 140.6 144 50.7
FvH4_4g20000 Fragaria vesca HOM05D004725 ORTHO05D005683 1.0e-27 127.9 162 45.7
Potri.010G147050 Populus trichocarpa HOM05D004725 ORTHO05D005683 1.7e-27 127.1 218 39.0
CSS0006068 Camellia sinensis var. sinensis HOM05D004725 ORTHO05D005683 1.2e-25 120.9 87 67.8
MCO14G052 Micromonas commoda HOM05D004725 ORTHO05D005683 1.8e-24 117.1 213 35.7
AUR62016226 Chenopodium quinoa HOM05D004725 ORTHO05D005683 1.9e-23 113.6 218 36.7
FAN22G2356 Fragaria x ananassa HOM05D004725 ORTHO05D005683 5.7e-23 112.1 92 60.9
Lalb_Chr20g0115601 Lupinus albus HOM05D004725 ORTHO05D005683 4.8e-22 109.0 100 57.0
HPP92_026067 Vanilla planifolia HOM05D004725 ORTHO05D005683 1.8e-21 107.1 110 55.5
Cre09.g393600 Chlamydomonas reinhardtii HOM05D004725 ORTHO05D005683 9.0e-21 104.8 216 32.9
Atru.chr3.3242 Acer truncatum HOM05D004725 ORTHO05D005683 3.6e-17 92.8 210 32.9
Nitab4.5_0007792g0050 Nicotiana tabacum HOM05D004725 ORTHO05D005683 6.7e-16 88.6 91 58.2
Actinidia18458 Actinidia chinensis HOM05D004725 ORTHO05D005683 1.9e-15 87.0 57 75.4
RcHm_v2.0_Chr7g0210081 Rosa chinensis HOM05D004725 ORTHO05D005683 3.3e-15 86.3 99 46.5
CARHR287810 Cardamine hirsuta HOM05D004725 ORTHO05D005683 4.3e-15 85.9 174 37.4
Zm00001eb143530 Zea mays HOM05D004725 ORTHO05D005683 1.2e-12 77.8 87 51.7
Zm00001eb401350 Zea mays HOM05D004725 ORTHO05D005683 1.2e-12 77.8 87 51.7
PRCOL_00004769 Prasinoderma coloniale HOM05D004725 ORTHO05D005683 2.0e-12 77.0 215 29.8
RcHm_v2.0_Chr6g0255221 Rosa chinensis HOM05D004725 ORTHO05D005683 2.6e-12 76.6 84 53.6
TWI73G0983 Tripterygium wilfordii HOM05D004725 ORTHO05D005683 5.9e-12 75.5 66 60.6
GSVIVG01034926001 Vitis vinifera HOM05D004725 ORTHO05D005683 3.6e-09 66.2 74 55.4
CARHR286240 Cardamine hirsuta HOM05D004725 ORTHO05D005683 1.0e-08 64.7 70 44.3
Zm00001eb228430 Zea mays HOM05D004725 ORTHO05D005683 1.4e-08 64.3 91 44.0
Lalb_Chr20g0110431 Lupinus albus HOM05D004725 ORTHO05D005683 2.3e-08 63.5 64 51.6
Zm00001eb417800 Zea mays HOM05D004725 ORTHO05D005683 8.8e-08 61.6 200 28.0


User provided reference genes

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