Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400006494 Solanum tuberosum HOM05D000812 ORTHO05D000672 1.3e-27 125.6 61 100.0
Sopen08g001290 Solanum pennellii HOM05D000812 ORTHO05D000672 5.3e-24 113.6 59 91.5
Solyc08g005270.3 Solanum lycopersicum HOM05D000812 ORTHO05D000672 9.0e-24 112.8 59 91.5
CAN.G137.9 Capsicum annuum HOM05D000812 ORTHO05D000672 1.7e-22 108.6 59 86.4
Nitab4.5_0002778g0090 Nicotiana tabacum HOM05D000812 ORTHO05D000672 5.1e-19 97.1 59 78.0
Nitab4.5_0000556g0260 Nicotiana tabacum HOM05D000812 ORTHO05D000672 1.9e-18 95.1 59 74.6
Peaxi162Scf00045g00222 Petunia axillaris HOM05D000812 ORTHO05D000672 6.3e-17 90.1 59 67.8
Dinv25256 Davidia involucrata HOM05D000812 ORTHO05D000672 8.5e-14 79.7 59 55.9
Dinv29000 Davidia involucrata HOM05D000812 ORTHO05D000672 1.1e-13 79.3 59 57.6
CSS0018934 Camellia sinensis var. sinensis HOM05D000812 ORTHO05D000672 1.4e-13 79.0 59 54.2
CSS0023620 Camellia sinensis var. sinensis HOM05D000812 ORTHO05D000672 1.4e-13 79.0 59 54.2
Hma1.2p1_1569F.1_g291230 Hydrangea macrophylla HOM05D000812 ORTHO05D000672 4.2e-13 77.4 59 54.2
CSS0031991 Camellia sinensis var. sinensis HOM05D000812 ORTHO05D000672 5.5e-13 77.0 59 55.9
arahy.Tifrunner.gnm1.ann1.IWD684 Arachis hypogaea HOM05D000812 ORTHO05D000672 3.6e-12 74.3 59 52.5
arahy.Tifrunner.gnm1.ann1.Z62NC6 Arachis hypogaea HOM05D000812 ORTHO05D000672 3.6e-12 74.3 59 52.5
MSTRG.24847 Avicennia marina HOM05D000812 ORTHO05D000672 3.6e-12 74.3 59 54.2
CiPaw.12G067900 Carya illinoinensis HOM05D000812 ORTHO05D000672 3.6e-12 74.3 59 50.8
Lalb_Chr09g0325491 Lupinus albus HOM05D000812 ORTHO05D000672 6.1e-12 73.6 59 55.9
Lj2A231T46 Lonicera japonica HOM05D000812 ORTHO05D000672 7.9e-12 73.2 59 52.5
Lj8A310G25 Lonicera japonica HOM05D000812 ORTHO05D000672 1.0e-11 72.8 59 52.5
Prupe.2G071200 Prunus persica HOM05D000812 ORTHO05D000672 1.0e-11 72.8 59 49.2
vmacro14198 Vaccinium macrocarpon HOM05D000812 ORTHO05D000672 1.0e-11 72.8 59 50.8
PGR031G1634 Punica granatum HOM05D000812 ORTHO05D000672 1.4e-11 72.4 59 52.5
TWI81G0168 Tripterygium wilfordii HOM05D000812 ORTHO05D000672 1.8e-11 72.0 59 50.8
MD07G1061500 Malus domestica HOM05D000812 ORTHO05D000672 2.3e-11 71.6 59 47.5
Nn1g00205 Nelumbo nucifera HOM05D000812 ORTHO05D000672 2.3e-11 71.6 59 49.2
TWI60G1711 Tripterygium wilfordii HOM05D000812 ORTHO05D000672 2.3e-11 71.6 59 52.5
Ca_25186_v3 Cicer arietinum L. HOM05D000812 ORTHO05D000672 3.0e-11 71.2 59 49.2
Lj8A309G35 Lonicera japonica HOM05D000812 ORTHO05D000672 3.0e-11 71.2 59 49.2
Rhsim07G0131700 Rhododendron simsii HOM05D000812 ORTHO05D000672 3.0e-11 71.2 59 49.2
CANSAT01G0262 Cannabis sativa HOM05D000812 ORTHO05D000672 5.1e-11 70.5 59 49.2
Cfa012520 Carpinus fangiana HOM05D000812 ORTHO05D000672 5.1e-11 70.5 59 49.2
Haze_08143 Corylus avellana HOM05D000812 ORTHO05D000672 5.1e-11 70.5 59 49.2
Atru.chr6.1521 Acer truncatum HOM05D000812 ORTHO05D000672 6.7e-11 70.1 59 47.5
CiPaw.11G098300 Carya illinoinensis HOM05D000812 ORTHO05D000672 6.7e-11 70.1 59 47.5
Lalb_Chr05g0216311 Lupinus albus HOM05D000812 ORTHO05D000672 6.7e-11 70.1 59 47.5
Medtr1g112330 Medicago truncatula HOM05D000812 ORTHO05D000672 8.8e-11 69.7 59 49.2
Potri.001G137200 Populus trichocarpa HOM05D000812 ORTHO05D000672 8.8e-11 69.7 59 47.5
MD02G1259200 Malus domestica HOM05D000812 ORTHO05D000672 1.1e-10 69.3 59 45.8
TAR375G0763 Trochodendron aralioides HOM05D000812 ORTHO05D000672 1.1e-10 69.3 59 45.8
Lj2g0005786 Lotus japonicus HOM05D000812 ORTHO05D000672 1.5e-10 68.9 59 47.5
Phvul.002G137600 Phaseolus vulgaris HOM05D000812 ORTHO05D000672 1.5e-10 68.9 59 49.2
QL12p001555 Quercus lobata HOM05D000812 ORTHO05D000672 1.5e-10 68.9 59 45.8
VMungo1215G2145 Vigna mungo HOM05D000812 ORTHO05D000672 1.5e-10 68.9 59 49.2
Aqoxy3G02185 Aquilegia oxysepala HOM05D000812 ORTHO05D000672 2.0e-10 68.6 59 47.5
MSTRG.12175 Avicennia marina HOM05D000812 ORTHO05D000672 2.0e-10 68.6 59 49.2
TPR.G19439 Trifolium pratense HOM05D000812 ORTHO05D000672 2.0e-10 68.6 59 47.5
arahy.Tifrunner.gnm1.ann1.FGQF31 Arachis hypogaea HOM05D000812 ORTHO05D000672 2.6e-10 68.2 59 45.8
arahy.Tifrunner.gnm1.ann1.HIE0E0 Arachis hypogaea HOM05D000812 ORTHO05D000672 2.6e-10 68.2 59 45.8
PSO063G2255 Papaver somniferum HOM05D000812 ORTHO05D000672 4.4e-10 67.4 59 47.5
PSO782G0693 Papaver somniferum HOM05D000812 ORTHO05D000672 4.4e-10 67.4 59 47.5
QL01p054497 Quercus lobata HOM05D000812 ORTHO05D000672 4.4e-10 67.4 59 45.8
Glyma.01G015000 Glycine max HOM05D000812 ORTHO05D000672 5.7e-10 67.0 59 44.1
Glyma.01G015200 Glycine max HOM05D000812 ORTHO05D000672 5.7e-10 67.0 59 44.1
Lj5g0002999 Lotus japonicus HOM05D000812 ORTHO05D000672 9.7e-10 66.2 59 47.5
Lalb_Chr16g0381101 Lupinus albus HOM05D000812 ORTHO05D000672 1.3e-09 65.9 59 47.5
Phvul.002G137500 Phaseolus vulgaris HOM05D000812 ORTHO05D000672 1.3e-09 65.9 59 44.1
SalBow6G5846 Salvia bowleyana HOM05D000812 ORTHO05D000672 1.3e-09 65.9 59 49.2
Actinidia14781 Actinidia chinensis HOM05D000812 ORTHO05D000672 1.7e-09 65.5 59 45.8
Medtr7g011550 Medicago truncatula HOM05D000812 ORTHO05D000672 1.7e-09 65.5 59 45.8
Dinv25257 Davidia involucrata HOM05D000812 ORTHO05D000672 2.2e-09 65.1 59 42.4
Lj2g0027449 Lotus japonicus HOM05D000812 ORTHO05D000672 2.2e-09 65.1 59 44.1
Lj5g0025253 Lotus japonicus HOM05D000812 ORTHO05D000672 2.2e-09 65.1 59 44.1
Manes.07G078500 Manihot esculenta HOM05D000812 ORTHO05D000672 2.2e-09 65.1 59 45.8
VMungo1215G0290 Vigna mungo HOM05D000812 ORTHO05D000672 2.2e-09 65.1 59 44.1
Aqoxy1G03562 Aquilegia oxysepala HOM05D000812 ORTHO05D000672 3.7e-09 64.3 59 45.8
Cpa.g.sc208.10 Carica papaya HOM05D000812 ORTHO05D000672 3.7e-09 64.3 59 45.8
MELO3C013824.2 Cucumis melo HOM05D000812 ORTHO05D000672 4.8e-09 63.9 59 42.4
Actinidia18129 Actinidia chinensis HOM05D000812 ORTHO05D000672 6.3e-09 63.5 59 45.8
CsaV3_3G001370 Cucumis sativus L. HOM05D000812 ORTHO05D000672 6.3e-09 63.5 59 42.4
Gohir.A08G153800 Gossypium hirsutum HOM05D000812 ORTHO05D000672 6.3e-09 63.5 59 44.1
Gohir.D08G174700 Gossypium hirsutum HOM05D000812 ORTHO05D000672 6.3e-09 63.5 59 44.1
Gorai.004G182400 Gossypium raimondii HOM05D000812 ORTHO05D000672 6.3e-09 63.5 59 44.1
Medtr5g032190 Medicago truncatula HOM05D000812 ORTHO05D000672 6.3e-09 63.5 59 44.1
Actinidia14780 Actinidia chinensis HOM05D000812 ORTHO05D000672 8.2e-09 63.2 59 42.4
Manes.10G069300 Manihot esculenta HOM05D000812 ORTHO05D000672 8.2e-09 63.2 59 44.1
Psat2g083680 Pisum sativum HOM05D000812 ORTHO05D000672 1.1e-08 62.8 59 44.1
SHI07352 Sapria himalayana HOM05D000812 ORTHO05D000672 1.1e-08 62.8 59 42.4
Solyc06g066330.3 Solanum lycopersicum HOM05D000812 ORTHO05D000672 1.1e-08 62.8 59 42.4
Sopen06g021690 Solanum pennellii HOM05D000812 ORTHO05D000672 1.1e-08 62.8 59 42.4
SGA_v2.0_scaffold36G14296 Striga asiatica HOM05D000812 ORTHO05D000672 1.4e-08 62.4 58 44.8
Lj4g0003508 Lotus japonicus HOM05D000812 ORTHO05D000672 1.8e-08 62.0 59 40.7
Nn3g19391 Nelumbo nucifera HOM05D000812 ORTHO05D000672 1.8e-08 62.0 59 42.4
Oeu017079.2 Olea europaea HOM05D000812 ORTHO05D000672 1.8e-08 62.0 59 49.2
Oeu017080.1 Olea europaea HOM05D000812 ORTHO05D000672 1.8e-08 62.0 59 39.0
Potri.003G096700 Populus trichocarpa HOM05D000812 ORTHO05D000672 1.8e-08 62.0 59 44.1
Rhsim07G0132000 Rhododendron simsii HOM05D000812 ORTHO05D000672 1.8e-08 62.0 59 42.4
RcHm_v2.0_Chr1g0331751 Rosa chinensis HOM05D000812 ORTHO05D000672 1.8e-08 62.0 59 40.7
TPR.G29299 Trifolium pratense HOM05D000812 ORTHO05D000672 1.8e-08 62.0 59 45.8
CDE02G1735 Ceratophyllum demersum HOM05D000812 ORTHO05D000672 2.4e-08 61.6 59 45.8
CDE11G0190 Ceratophyllum demersum HOM05D000812 ORTHO05D000672 2.4e-08 61.6 59 44.1
Lj2g0011797 Lotus japonicus HOM05D000812 ORTHO05D000672 2.4e-08 61.6 59 42.4
Rhsim11G0021100 Rhododendron simsii HOM05D000812 ORTHO05D000672 2.4e-08 61.6 59 42.4
Actinidia18134 Actinidia chinensis HOM05D000812 ORTHO05D000672 3.1e-08 61.2 59 42.4
Dinv29001 Davidia involucrata HOM05D000812 ORTHO05D000672 3.1e-08 61.2 59 40.7
Aa31LG9G15500 Aethionema arabicum HOM05D000812 ORTHO05D000672 4.1e-08 60.8 59 42.4
DCAR_008225 Daucus carota HOM05D000812 ORTHO05D000672 4.1e-08 60.8 59 44.1
Duzib068G1124 Durio zibethinus HOM05D000812 ORTHO05D000672 4.1e-08 60.8 59 39.0
Glyma.09G207200 Glycine max HOM05D000812 ORTHO05D000672 4.1e-08 60.8 59 40.7
HanXRQChr04g0098991 Helianthus annuus HOM05D000812 ORTHO05D000672 4.1e-08 60.8 59 40.7
HanXRQChr06g0172751 Helianthus annuus HOM05D000812 ORTHO05D000672 4.1e-08 60.8 59 40.7
Sed0016766 Sechium edule HOM05D000812 ORTHO05D000672 4.1e-08 60.8 59 39.0
PGSC0003DMG401016766 Solanum tuberosum HOM05D000812 ORTHO05D000672 4.1e-08 60.8 59 40.7
Lsat_1_v5_gn_6_3701 Lactuca sativa HOM05D000812 ORTHO05D000672 5.3e-08 60.5 59 40.7
Ca_04535_v3 Cicer arietinum L. HOM05D000812 ORTHO05D000672 6.9e-08 60.1 59 42.4
HanXRQChr17g0538331 Helianthus annuus HOM05D000812 ORTHO05D000672 6.9e-08 60.1 59 39.0
Oeu027086.1 Olea europaea HOM05D000812 ORTHO05D000672 6.9e-08 60.1 59 39.0
Zm00001eb210510 Zea mays HOM05D000812 ORTHO05D000672 6.9e-08 60.1 59 37.3
Peaxi162Scf00185g00108 Petunia axillaris HOM05D000812 ORTHO05D000672 9.1e-08 59.7 59 42.4
ATR0829G078 Amborella trichopoda HOM05D000812 ORTHO05D000672 1.2e-07 59.3 59 42.4
ECA233G0848 Erigeron canadensis HOM05D000812 ORTHO05D000672 1.2e-07 59.3 59 40.7
vmacro00281 Vaccinium macrocarpon HOM05D000812 ORTHO05D000672 1.2e-07 59.3 59 42.4
Aa31LG2G13770 Aethionema arabicum HOM05D000812 ORTHO05D000672 1.5e-07 58.9 59 40.7
CARHR129680 Cardamine hirsuta HOM05D000812 ORTHO05D000672 1.5e-07 58.9 59 39.0
A04p26940 Brassica napus HOM05D000812 ORTHO05D000672 2.0e-07 58.5 56 44.6
BraA04t18193Z Brassica rapa HOM05D000812 ORTHO05D000672 2.0e-07 58.5 56 44.6
Thhalv10016444m.g Eutrema salsugineum HOM05D000812 ORTHO05D000672 2.0e-07 58.5 56 44.6
DCAR_004272 Daucus carota HOM05D000812 ORTHO05D000672 2.6e-07 58.2 59 40.7
Migut.N00926 Erythranthe guttata HOM05D000812 ORTHO05D000672 2.6e-07 58.2 59 42.4
Lj4g0021393 Lotus japonicus HOM05D000812 ORTHO05D000672 2.6e-07 58.2 59 40.7
THA.LOC104798492 Tarenaya hassleriana HOM05D000812 ORTHO05D000672 3.4e-07 57.8 59 40.7
Duzib205G1904 Durio zibethinus HOM05D000812 ORTHO05D000672 4.5e-07 57.4 59 37.3
Gorai.008G224200 Gossypium raimondii HOM05D000812 ORTHO05D000672 4.5e-07 57.4 59 39.0
HanXRQChr13g0395501 Helianthus annuus HOM05D000812 ORTHO05D000672 4.5e-07 57.4 59 37.3
Solyc08g076420.3 Solanum lycopersicum HOM05D000812 ORTHO05D000672 4.5e-07 57.4 59 39.0
Sopen08g025000 Solanum pennellii HOM05D000812 ORTHO05D000672 4.5e-07 57.4 59 39.0
PGSC0003DMG400014804 Solanum tuberosum HOM05D000812 ORTHO05D000672 4.5e-07 57.4 59 39.0
SGA_v2.0_scaffold198G41075 Striga asiatica HOM05D000812 ORTHO05D000672 4.5e-07 57.4 59 42.4
Zm00001eb025040 Zea mays HOM05D000812 ORTHO05D000672 4.5e-07 57.4 52 46.2
Nitab4.5_0000109g0020 Nicotiana tabacum HOM05D000812 ORTHO05D000672 5.9e-07 57.0 59 39.0
Nitab4.5_0001632g0040 Nicotiana tabacum HOM05D000812 ORTHO05D000672 5.9e-07 57.0 59 39.0
THA.LOC104814416 Tarenaya hassleriana HOM05D000812 ORTHO05D000672 5.9e-07 57.0 59 42.4
vmacro14200 Vaccinium macrocarpon HOM05D000812 ORTHO05D000672 5.9e-07 57.0 59 39.0
Zm00001eb224950 Zea mays HOM05D000812 ORTHO05D000672 5.9e-07 57.0 56 44.6
AUR62020715 Chenopodium quinoa HOM05D000812 ORTHO05D000672 7.7e-07 56.6 59 39.0
AUR62028007 Chenopodium quinoa HOM05D000812 ORTHO05D000672 7.7e-07 56.6 59 39.0
Gohir.A12G206300 Gossypium hirsutum HOM05D000812 ORTHO05D000672 7.7e-07 56.6 59 39.0
Gohir.D12G208700 Gossypium hirsutum HOM05D000812 ORTHO05D000672 7.7e-07 56.6 59 39.0
Thecc.03G309900 Theobroma cacao HOM05D000812 ORTHO05D000672 7.7e-07 56.6 59 37.3
CSS0005047 Camellia sinensis var. sinensis HOM05D000812 ORTHO05D000672 1.0e-06 56.2 59 39.0
Carub.0004s1720 Capsella rubella HOM05D000812 ORTHO05D000672 1.0e-06 56.2 56 42.9
COL.COLO4_16946 Corchorus olitorius HOM05D000812 ORTHO05D000672 1.3e-06 55.8 59 39.0
ECA246G0693 Erigeron canadensis HOM05D000812 ORTHO05D000672 1.3e-06 55.8 59 39.0
Lj2g0020551 Lotus japonicus HOM05D000812 ORTHO05D000672 1.3e-06 55.8 59 37.3
Lj4g0023939 Lotus japonicus HOM05D000812 ORTHO05D000672 1.3e-06 55.8 59 39.0
PGR042G1398 Punica granatum HOM05D000812 ORTHO05D000672 1.3e-06 55.8 59 37.3
Sc09g0008190 Simmondsia chinensis HOM05D000812 ORTHO05D000672 1.3e-06 55.8 59 39.0
EL10Ac2g03636 Beta vulgaris HOM05D000812 ORTHO05D000672 1.7e-06 55.5 59 39.0
CAN.G726.21 Capsicum annuum HOM05D000812 ORTHO05D000672 1.7e-06 55.5 59 37.3
A05p10220 Brassica napus HOM05D000812 ORTHO05D000672 2.2e-06 55.1 56 39.3
BraA05t19962Z Brassica rapa HOM05D000812 ORTHO05D000672 2.2e-06 55.1 56 39.3
CiPaw.12G068000 Carya illinoinensis HOM05D000812 ORTHO05D000672 2.2e-06 55.1 57 40.4
Os10g0577800 Oryza sativa ssp. japonica HOM05D000812 ORTHO05D000672 2.2e-06 55.1 56 42.9
QL12p001583 Quercus lobata HOM05D000812 ORTHO05D000672 2.2e-06 55.1 59 37.3
Sp4g17730 Schrenkiella parvula HOM05D000812 ORTHO05D000672 2.2e-06 55.1 53 43.4
Nitab4.5_0002190g0010 Nicotiana tabacum HOM05D000812 ORTHO05D000672 2.9e-06 54.7 59 37.3
Cfa012518 Carpinus fangiana HOM05D000812 ORTHO05D000672 3.8e-06 54.3 59 33.9
BcaC02g07707 Brassica carinata HOM05D000812 ORTHO05D000672 6.5e-06 53.5 56 41.1
Ah.11g043640 Amaranthus hybridus HOM05D000812 ORTHO05D000672 8.5e-06 53.1 59 35.6
BcaC02g11656 Brassica carinata HOM05D000812 ORTHO05D000672 8.5e-06 53.1 56 39.3
C04p12670 Brassica napus HOM05D000812 ORTHO05D000672 8.5e-06 53.1 56 39.3
C04p64330 Brassica napus HOM05D000812 ORTHO05D000672 8.5e-06 53.1 56 41.1
BolC4t22915H Brassica oleracea HOM05D000812 ORTHO05D000672 8.5e-06 53.1 56 39.3
BolC4t27920H Brassica oleracea HOM05D000812 ORTHO05D000672 8.5e-06 53.1 56 41.1


User provided reference genes

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