Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400005941 Solanum tuberosum HOM05D001598 ORTHO05D002757 1.2e-36 156.0 78 100.0
Solyc01g010570.4 Solanum lycopersicum HOM05D001598 ORTHO05D002757 2.7e-33 144.8 74 95.9
PGSC0003DMG400009618 Solanum tuberosum HOM05D001598 ORTHO05D002757 2.7e-33 144.8 74 95.9
Sopen01g006220 Solanum pennellii HOM05D001598 ORTHO05D002757 2.3e-32 141.7 74 94.6
Nitab4.5_0003566g0010 Nicotiana tabacum HOM05D001598 ORTHO05D002757 9.8e-31 136.3 72 93.1
Nitab4.5_0000141g0270 Nicotiana tabacum HOM05D001598 ORTHO05D002757 2.8e-30 134.8 72 91.7
CAN.G38.31 Capsicum annuum HOM05D001598 ORTHO05D002757 2.7e-28 128.3 72 88.9
Dinv16629 Davidia involucrata HOM05D001598 ORTHO05D002757 1.0e-24 116.3 73 75.3
Sc11g0001820 Simmondsia chinensis HOM05D001598 ORTHO05D002757 8.8e-24 113.2 69 79.7
SGA_v2.0_scaffold53G19414 Striga asiatica HOM05D001598 ORTHO05D002757 1.2e-23 112.8 70 78.6
DCAR_021706 Daucus carota HOM05D001598 ORTHO05D002757 2.0e-23 112.1 69 73.9
GSVIVG01023007001 Vitis vinifera HOM05D001598 ORTHO05D002757 2.0e-23 112.1 59 88.1
TAR629G0383 Trochodendron aralioides HOM05D001598 ORTHO05D002757 5.7e-23 110.5 69 73.9
TAR629G1744 Trochodendron aralioides HOM05D001598 ORTHO05D002757 5.7e-23 110.5 69 73.9
vmacro01241 Vaccinium macrocarpon HOM05D001645 ORTHO05D002757 5.7e-23 110.5 57 89.5
vmacro01243 Vaccinium macrocarpon HOM05D001645 ORTHO05D002757 5.7e-23 110.5 57 89.5
FvH4_4g31560 Fragaria vesca HOM05D001598 ORTHO05D002757 7.5e-23 110.2 69 73.9
FAN12G4270 Fragaria x ananassa HOM05D001598 ORTHO05D002757 7.5e-23 110.2 69 73.9
MD13G1073900 Malus domestica HOM05D001598 ORTHO05D002757 9.8e-23 109.8 57 87.7
MD16G1075100 Malus domestica HOM05D001598 ORTHO05D002757 9.8e-23 109.8 57 87.7
RcHm_v2.0_Chr4g0440071 Rosa chinensis HOM05D001598 ORTHO05D002757 9.8e-23 109.8 69 73.9
Duzib251G0726 Durio zibethinus HOM05D001598 ORTHO05D002757 1.3e-22 109.4 69 75.4
Gohir.A03G104500 Gossypium hirsutum HOM05D001598 ORTHO05D002757 1.3e-22 109.4 55 90.9
Gohir.D03G140800 Gossypium hirsutum HOM05D001598 ORTHO05D002757 1.3e-22 109.4 55 90.9
Gohir.D11G326400 Gossypium hirsutum HOM05D001598 ORTHO05D002757 1.3e-22 109.4 55 90.9
Gorai.005G145600 Gossypium raimondii HOM05D001598 ORTHO05D002757 1.3e-22 109.4 55 90.9
Rhsim12G0061700 Rhododendron simsii HOM05D001645 ORTHO05D002757 1.3e-22 109.4 55 90.9
Ciclev10032165m.g Citrus clementina HOM05D001598 ORTHO05D002757 2.2e-22 108.6 69 73.9
FAN07G2650 Fragaria x ananassa HOM05D001598 ORTHO05D002757 2.2e-22 108.6 69 72.5
QL03p064604 Quercus lobata HOM05D001598 ORTHO05D002757 2.2e-22 108.6 69 73.9
Cpa.g.sc128.1 Carica papaya HOM05D001598 ORTHO05D002757 2.8e-22 108.2 69 75.4
Prupe.3G107100 Prunus persica HOM05D001598 ORTHO05D002757 2.8e-22 108.2 58 82.8
Manes.06G018600 Manihot esculenta HOM05D001598 ORTHO05D002757 3.7e-22 107.8 68 75.0
Atru.chr11.1822 Acer truncatum HOM05D001598 ORTHO05D002757 4.9e-22 107.5 70 74.3
CiPaw.05G137200 Carya illinoinensis HOM05D001598 ORTHO05D002757 4.9e-22 107.5 55 87.3
COL.COLO4_22982 Corchorus olitorius HOM05D001598 ORTHO05D010176 4.9e-22 107.5 55 89.1
Haze_12029 Corylus avellana HOM05D001598 ORTHO05D002757 4.9e-22 107.5 57 84.2
Lj8A728T10 Lonicera japonica HOM05D001598 ORTHO05D002757 4.9e-22 107.5 73 71.2
SGA_v2.0_scaffold1G00702 Striga asiatica HOM05D001598 ORTHO05D002757 4.9e-22 107.5 71 73.2
MSTRG.691 Avicennia marina HOM05D001598 ORTHO05D002757 6.3e-22 107.1 66 77.3
Lsat_1_v5_gn_8_4521 Lactuca sativa HOM05D001598 ORTHO05D002757 6.3e-22 107.1 69 75.4
Prupe.1G272100 Prunus persica HOM05D001598 ORTHO05D002757 6.3e-22 107.1 59 79.7
Thecc.02G349900 Theobroma cacao HOM05D001598 ORTHO05D002757 6.3e-22 107.1 69 72.5
CANSAT64G1213 Cannabis sativa HOM05D001598 ORTHO05D002757 8.3e-22 106.7 66 77.3
CSS0022192 Camellia sinensis var. sinensis HOM05D001598 ORTHO05D002757 1.1e-21 106.3 56 85.7
ClCG03G014280 Citrullus lanatus HOM05D001598 ORTHO05D002757 1.8e-21 105.5 59 79.7
Migut.L01310 Erythranthe guttata HOM05D001598 ORTHO05D002757 1.8e-21 105.5 75 69.3
Actinidia07837 Actinidia chinensis HOM05D000001 ORTHO05D010176 2.4e-21 105.1 65 75.4
Hund25254 Selenicereus undatus HOM05D001598 ORTHO05D002757 2.4e-21 105.1 72 73.6
Os03g0379400 Oryza sativa ssp. japonica HOM05D001598 ORTHO05D002757 3.1e-21 104.8 69 73.9
TWI18G0113 Tripterygium wilfordii HOM05D001598 ORTHO05D002757 3.1e-21 104.8 69 71.0
AT2G02880 Arabidopsis thaliana HOM05D001598 ORTHO05D002757 4.1e-21 104.4 62 82.3
CsaV3_1G041940 Cucumis sativus L. HOM05D001598 ORTHO05D002757 4.1e-21 104.4 55 83.6
Gohir.D02G129700 Gossypium hirsutum HOM05D001598 ORTHO05D002757 4.1e-21 104.4 55 87.3
Peaxi162Scf00026g03113 Petunia axillaris HOM05D001598 ORTHO05D002757 4.1e-21 104.4 61 85.2
TPR.G37035 Trifolium pratense HOM05D001598 ORTHO05D002757 4.1e-21 104.4 60 76.7
Thhalv10004617m.g Eutrema salsugineum HOM05D001598 ORTHO05D002757 5.4e-21 104.0 63 79.4
Lalb_Chr10g0098161 Lupinus albus HOM05D001598 ORTHO05D002757 5.4e-21 104.0 59 79.7
MBI05_g28392_MAGBIO Magnolia biondii HOM05D001598 ORTHO05D002757 5.4e-21 104.0 59 78.0
Ca_04769_v3 Cicer arietinum L. HOM05D001598 ORTHO05D002757 7.0e-21 103.6 58 79.3
Ca_30734_v3 Cicer arietinum L. HOM05D001598 ORTHO05D002757 7.0e-21 103.6 58 79.3
Cc11_g13210 Coffea canephora HOM05D001598 ORTHO05D002757 7.0e-21 103.6 69 71.0
Medtr5g039440 Medicago truncatula HOM05D001598 ORTHO05D002757 7.0e-21 103.6 58 79.3
Sed0011075 Sechium edule HOM05D001598 ORTHO05D002757 7.0e-21 103.6 66 72.7
Psat2g121440 Pisum sativum HOM05D001598 ORTHO05D002757 9.1e-21 103.2 57 80.7
SalBow2G2991 Salvia bowleyana HOM05D001598 ORTHO05D002757 9.1e-21 103.2 69 66.7
SalBow2G3361 Salvia bowleyana HOM05D001598 ORTHO05D002757 9.1e-21 103.2 69 66.7
Aqoxy3G00689 Aquilegia oxysepala HOM05D001598 ORTHO05D002757 1.2e-20 102.8 70 64.3
EL10Ac6g13181 Beta vulgaris HOM05D001598 ORTHO05D002757 1.2e-20 102.8 57 84.2
MELO3C015610.2 Cucumis melo HOM05D001598 ORTHO05D002757 1.2e-20 102.8 55 81.8
Glyma.01G045300 Glycine max HOM05D001598 ORTHO05D002757 1.2e-20 102.8 63 73.0
Glyma.02G105700 Glycine max HOM05D001598 ORTHO05D002757 1.2e-20 102.8 63 73.0
Aa31LG2G7420 Aethionema arabicum HOM05D001598 ORTHO05D002757 1.6e-20 102.4 62 79.0
ATR0564G259 Amborella trichopoda HOM05D001598 ORTHO05D002757 1.6e-20 102.4 61 73.8
BcaB07g30318 Brassica carinata HOM05D001598 ORTHO05D002757 1.6e-20 102.4 69 72.5
BcaC03g17175 Brassica carinata HOM05D001598 ORTHO05D002757 1.6e-20 102.4 69 72.5
C02p50980 Brassica napus HOM05D001598 ORTHO05D002757 1.6e-20 102.4 69 72.5
BolC2t11190H Brassica oleracea HOM05D001598 ORTHO05D002757 1.6e-20 102.4 69 72.5
CARHR145320 Cardamine hirsuta HOM05D001598 ORTHO05D002757 1.6e-20 102.4 62 75.8
Sp2g13960 Schrenkiella parvula HOM05D001598 ORTHO05D002757 1.6e-20 102.4 69 72.5
Ah.02g131210 Amaranthus hybridus HOM05D001645 ORTHO05D002757 2.0e-20 102.1 73 68.5
arahy.Tifrunner.gnm1.ann1.BUM29L Arachis hypogaea HOM05D001598 ORTHO05D002757 2.0e-20 102.1 67 70.1
arahy.Tifrunner.gnm1.ann1.Z4M8GV Arachis hypogaea HOM05D001598 ORTHO05D002757 2.0e-20 102.1 67 70.1
Carub.0005s0177 Capsella rubella HOM05D001598 ORTHO05D002757 2.0e-20 102.1 62 79.0
Eucgr.G02513 Eucalyptus grandis HOM05D001598 ORTHO05D002757 2.0e-20 102.1 55 83.6
PSO017G4006 Papaver somniferum HOM05D001598 ORTHO05D002757 2.0e-20 102.1 58 79.3
Potri.015G004400 Populus trichocarpa HOM05D001598 ORTHO05D002757 2.0e-20 102.1 55 80.0
Sabra04G0059300 Salix brachista HOM05D001598 ORTHO05D002757 2.0e-20 102.1 55 80.0
Sabra12G0003000 Salix brachista HOM05D001598 ORTHO05D002757 2.0e-20 102.1 55 80.0
Sabra15G0003000 Salix brachista HOM05D001598 ORTHO05D002757 2.0e-20 102.1 55 80.0
AL5G12440 Arabidopsis lyrata HOM05D001598 ORTHO05D002757 2.7e-20 101.7 62 79.0
A02p33170 Brassica napus HOM05D001598 ORTHO05D002757 2.7e-20 101.7 61 77.0
BraA02t08340Z Brassica rapa HOM05D001598 ORTHO05D002757 2.7e-20 101.7 61 77.0
VMungo1215G3305 Vigna mungo HOM05D001598 ORTHO05D002757 2.7e-20 101.7 62 74.2
Phvul.002G086800 Phaseolus vulgaris HOM05D001598 ORTHO05D002757 3.5e-20 101.3 63 71.4
Lj2g0010789 Lotus japonicus HOM05D001598 ORTHO05D002757 7.7e-20 100.1 58 77.6
HPP92_016856 Vanilla planifolia HOM05D001598 ORTHO05D002757 7.7e-20 100.1 69 68.1
arahy.Tifrunner.gnm1.ann1.5WK4WG Arachis hypogaea HOM05D001598 ORTHO05D002757 1.0e-19 99.8 54 81.5
PSO478G0282 Papaver somniferum HOM05D001598 ORTHO05D002757 1.0e-19 99.8 59 76.3
HanXRQChr12g0371061 Helianthus annuus HOM05D001598 ORTHO05D002757 1.7e-19 99.0 70 71.4
AUR62005754 Chenopodium quinoa HOM05D001598 ORTHO05D002757 2.3e-19 98.6 72 68.1
PGR119G0480 Punica granatum HOM05D001598 ORTHO05D002757 6.6e-19 97.1 70 67.1
THA.LOC104805152 Tarenaya hassleriana HOM05D001598 ORTHO05D002757 1.9e-18 95.5 55 74.5
Lj3C1039T11 Lonicera japonica HOM05D001598 ORTHO05D002757 4.2e-18 94.4 53 77.4
ECA234G4840 Erigeron canadensis HOM05D001598 ORTHO05D002757 7.2e-18 93.6 56 76.8
Potri.012G021000 Populus trichocarpa HOM05D001598 ORTHO05D002757 1.8e-16 89.0 53 73.6
unitig_22.g6913 Utricularia gibba HOM05D001598 ORTHO05D001528 9.2e-13 76.6 38 89.5
FAN17G2100 Fragaria x ananassa HOM05D001598 ORTHO05D010176 1.2e-12 76.3 35 94.3
SEGI_32430 Sequoiadendron giganteum HOM05D001598 ORTHO05D002757 4.3e-10 67.8 44 63.6
Oeu027580.1 Olea europaea HOM05D001598 ORTHO05D002757 1.4e-08 62.8 55 47.3
Oeu050015.1 Olea europaea HOM05D001598 ORTHO05D002757 3.1e-08 61.6 55 45.5
DCAR_013251 Daucus carota HOM05D001598 ORTHO05D002757 6.8e-08 60.5 55 47.3
SMO236G0017 Selaginella moellendorffii HOM05D001598 ORTHO05D002757 8.9e-08 60.1 56 44.6
Atru.chr11.1498 Acer truncatum HOM05D001598 ORTHO05D002757 1.5e-07 59.3 55 43.6
Cc01_g06370 Coffea canephora HOM05D001598 ORTHO05D002757 2.0e-07 58.9 55 43.6
Duzib212G0742 Durio zibethinus HOM05D001598 ORTHO05D002757 2.0e-07 58.9 55 43.6
Atru.chr4.1342 Acer truncatum HOM05D001598 ORTHO05D002757 2.6e-07 58.5 55 43.6
Ah.13g078030 Amaranthus hybridus HOM05D001598 ORTHO05D002757 2.6e-07 58.5 57 42.1
Ca_01999_v3 Cicer arietinum L. HOM05D001598 ORTHO05D002757 3.4e-07 58.2 54 42.6
Lalb_Chr18g0052141 Lupinus albus HOM05D001598 ORTHO05D002757 3.4e-07 58.2 56 42.9
MSTRG.21240 Avicennia marina HOM05D001598 ORTHO05D002757 4.4e-07 57.8 55 41.8
Dinv44166 Davidia involucrata HOM05D001598 ORTHO05D002757 4.4e-07 57.8 55 43.6
Lsat_1_v5_gn_8_112440 Lactuca sativa HOM05D001598 ORTHO05D002757 4.4e-07 57.8 55 41.8
Lsat_1_v5_gn_8_69520 Lactuca sativa HOM05D001598 ORTHO05D002757 4.4e-07 57.8 55 41.8
Os01g0801700 Oryza sativa ssp. japonica HOM05D001598 ORTHO05D002757 5.8e-07 57.4 54 40.7
CSS0008753 Camellia sinensis var. sinensis HOM05D001598 ORTHO05D002757 7.5e-07 57.0 55 41.8
Migut.D00847 Erythranthe guttata HOM05D001598 ORTHO05D002757 7.5e-07 57.0 55 41.8
ClCG10G002790 Citrullus lanatus HOM05D001598 ORTHO05D002757 9.8e-07 56.6 54 44.4
Manes.11G105600 Manihot esculenta HOM05D001598 ORTHO05D002757 1.3e-06 56.2 57 38.6
Nn1g09429 Nelumbo nucifera HOM05D001598 ORTHO05D002757 1.3e-06 56.2 54 38.9
arahy.Tifrunner.gnm1.ann1.9TX8HM Arachis hypogaea HOM05D001598 ORTHO05D002757 1.7e-06 55.8 54 40.7
arahy.Tifrunner.gnm1.ann1.F1G1DC Arachis hypogaea HOM05D001598 ORTHO05D002757 1.7e-06 55.8 54 40.7
VMungo1309G2065 Vigna mungo HOM05D001598 ORTHO05D002757 1.7e-06 55.8 54 42.6
Zm00001eb150640 Zea mays HOM05D001598 ORTHO05D002757 1.7e-06 55.8 54 38.9
Eucgr.H00336 Eucalyptus grandis HOM05D001598 ORTHO05D002757 2.2e-06 55.5 55 40.0
Hund10980 Selenicereus undatus HOM05D001598 ORTHO05D002757 2.2e-06 55.5 55 41.8
ATR0757G133 Amborella trichopoda HOM05D001598 ORTHO05D002757 2.9e-06 55.1 54 38.9
PGR142G2642 Punica granatum HOM05D001598 ORTHO05D002757 2.9e-06 55.1 57 38.6
THA.LOC104820518 Tarenaya hassleriana HOM05D001598 ORTHO05D002757 2.9e-06 55.1 49 44.9
CiPaw.01G173400 Carya illinoinensis HOM05D001598 ORTHO05D002757 3.7e-06 54.7 54 38.9
AUR62028805 Chenopodium quinoa HOM05D001598 ORTHO05D002757 3.7e-06 54.7 33 75.8
Phvul.009G242000 Phaseolus vulgaris HOM05D001598 ORTHO05D002757 3.7e-06 54.7 54 40.7
QL03p060335 Quercus lobata HOM05D001598 ORTHO05D002757 3.7e-06 54.7 54 38.9
QL10p006125 Quercus lobata HOM05D001598 ORTHO05D002757 3.7e-06 54.7 54 38.9
unitig_699.g19728 Utricularia gibba HOM05D001598 ORTHO05D002757 3.7e-06 54.7 57 36.8
Actinidia36797 Actinidia chinensis HOM05D001598 ORTHO05D002757 6.4e-06 53.9 55 40.0
Sed0000960 Sechium edule HOM05D001598 ORTHO05D002757 6.4e-06 53.9 54 40.7
SGA_v2.0_scaffold25G11133 Striga asiatica HOM05D001598 ORTHO05D002757 6.4e-06 53.9 55 40.0
MELO3C013949.2 Cucumis melo HOM05D001598 ORTHO05D002757 8.3e-06 53.5 54 38.9


User provided reference genes

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