Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400004788 Solanum tuberosum HOM05D007062 ORTHO05D008941 1.7e-103 379.8 265 100.0
Sopen08g027570 Solanum pennellii HOM05D007062 ORTHO05D008941 6.8e-100 367.9 265 97.0
Solyc08g079110.4 Solanum lycopersicum HOM05D007062 ORTHO05D008941 5.9e-96 354.8 265 95.5
CAN.G1217.21 Capsicum annuum HOM05D007062 ORTHO05D008941 1.7e-95 353.2 266 94.0
Nitab4.5_0000993g0090 Nicotiana tabacum HOM05D007062 ORTHO05D008941 2.4e-89 332.8 270 91.9
Peaxi162Scf00002g00075 Petunia axillaris HOM05D007062 ORTHO05D008941 2.7e-88 329.3 269 90.7
Nitab4.5_0005649g0010 Nicotiana tabacum HOM05D007062 ORTHO05D008941 1.7e-87 326.6 270 91.1
Migut.A00806 Erythranthe guttata HOM05D007062 ORTHO05D008941 1.4e-76 290.4 273 83.2
Cc08_g12960 Coffea canephora HOM05D007062 ORTHO05D008941 3.5e-72 275.8 270 77.8
CSS0040813 Camellia sinensis var. sinensis HOM05D007062 ORTHO05D008941 8.6e-71 271.2 278 77.7
SalBow6G7097 Salvia bowleyana HOM05D007062 ORTHO05D008941 4.3e-70 268.9 268 79.1
CSS0025302 Camellia sinensis var. sinensis HOM05D007062 ORTHO05D008941 2.8e-69 266.2 284 76.1
TPR.G25898 Trifolium pratense HOM05D007062 ORTHO05D008941 1.4e-68 263.8 269 77.7
Glyma.11G030700 Glycine max HOM05D007062 ORTHO05D008941 3.1e-68 262.7 266 77.8
TAR375G0275 Trochodendron aralioides HOM05D007062 ORTHO05D008941 5.2e-68 261.9 267 76.4
MSTRG.25539 Avicennia marina HOM05D007062 ORTHO05D008941 7.5e-67 258.1 272 66.5
arahy.Tifrunner.gnm1.ann1.06MV4V Arachis hypogaea HOM05D007062 ORTHO05D008941 2.9e-66 256.1 265 74.7
arahy.Tifrunner.gnm1.ann1.FU46H2 Arachis hypogaea HOM05D007062 ORTHO05D008941 2.9e-66 256.1 265 74.7
Actinidia02105 Actinidia chinensis HOM05D007062 ORTHO05D008941 4.9e-66 255.4 267 76.8
Lsat_1_v5_gn_6_2361 Lactuca sativa HOM05D007062 ORTHO05D008941 1.9e-65 253.4 273 74.0
Phvul.002G061100 Phaseolus vulgaris HOM05D007062 ORTHO05D008941 2.4e-65 253.1 284 72.2
CiPaw.12G106400 Carya illinoinensis HOM05D007062 ORTHO05D008941 4.1e-65 252.3 280 74.3
Eucgr.D02028 Eucalyptus grandis HOM05D007062 ORTHO05D008941 5.4e-65 251.9 250 65.2
Ciclev10021545m.g Citrus clementina HOM05D007062 ORTHO05D008941 7.1e-65 251.5 283 72.8
Lj2g0026876 Lotus japonicus HOM05D007062 ORTHO05D008941 7.1e-65 251.5 273 75.8
Cpa.g.sc29.119 Carica papaya HOM05D007062 ORTHO05D008941 9.2e-65 251.1 272 75.0
ClCG01G003790 Citrullus lanatus HOM05D007062 ORTHO05D008941 1.2e-64 250.8 278 73.7
PSO782G2909 Papaver somniferum HOM05D007062 ORTHO05D008941 1.2e-64 250.8 283 73.9
Sed0027513 Sechium edule HOM05D007062 ORTHO05D008941 1.2e-64 250.8 269 74.7
VMungo1215G0274 Vigna mungo HOM05D007062 ORTHO05D008941 2.1e-64 250.0 281 72.6
MELO3C005562.2 Cucumis melo HOM05D007062 ORTHO05D008941 2.7e-64 249.6 280 72.9
ECA232G1654 Erigeron canadensis HOM05D007062 ORTHO05D008941 4.6e-64 248.8 286 72.4
CsaV3_5G003940 Cucumis sativus L. HOM05D007062 ORTHO05D008941 7.8e-64 248.1 278 72.7
PSO063G0503 Papaver somniferum HOM05D007062 ORTHO05D008941 7.8e-64 248.1 277 74.4
Thhalv10008422m.g Eutrema salsugineum HOM05D007062 ORTHO05D008941 1.3e-63 247.3 281 73.0
BcaC07g42568 Brassica carinata HOM05D007062 ORTHO05D008941 3.0e-63 246.1 280 73.6
QL12p014002 Quercus lobata HOM05D007062 ORTHO05D008941 3.0e-63 246.1 313 50.5
Sp1g10870 Schrenkiella parvula HOM05D007062 ORTHO05D008941 3.0e-63 246.1 281 73.3
Ah.02g116970 Amaranthus hybridus HOM05D007062 ORTHO05D008941 6.6e-63 245.0 270 74.8
Duzib205G0297 Durio zibethinus HOM05D007062 ORTHO05D008941 8.6e-63 244.6 284 71.5
Manes.01G076100 Manihot esculenta HOM05D007062 ORTHO05D008941 8.6e-63 244.6 280 67.5
GSVIVG01001267001 Vitis vinifera HOM05D007062 ORTHO05D008941 8.6e-63 244.6 271 74.9
Atru.chr9.1388 Acer truncatum HOM05D007062 ORTHO05D008941 1.1e-62 244.2 272 74.3
BcaC07g41714 Brassica carinata HOM05D007062 ORTHO05D008941 1.1e-62 244.2 280 72.5
Prupe.5G075900 Prunus persica HOM05D007062 ORTHO05D008941 1.1e-62 244.2 281 68.7
A09p63980 Brassica napus HOM05D007062 ORTHO05D008941 1.5e-62 243.8 280 73.2
BraA09t41747Z Brassica rapa HOM05D007062 ORTHO05D008941 1.5e-62 243.8 280 73.2
Potri.003G112900 Populus trichocarpa HOM05D007062 ORTHO05D008941 1.5e-62 243.8 280 68.6
Lalb_Chr16g0379721 Lupinus albus HOM05D007062 ORTHO05D008941 1.9e-62 243.4 219 85.8
C08p47500 Brassica napus HOM05D007062 ORTHO05D008941 2.5e-62 243.0 280 72.9
SGA_v2.0_scaffold120G32845 Striga asiatica HOM05D007062 ORTHO05D008941 2.5e-62 243.0 270 74.8
BolC8t52291H Brassica oleracea HOM05D007062 ORTHO05D008941 4.3e-62 242.3 280 73.6
TWI60G0310 Tripterygium wilfordii HOM05D007062 ORTHO05D008941 4.3e-62 242.3 265 75.1
Carub.0001s1193 Capsella rubella HOM05D007062 ORTHO05D008941 5.6e-62 241.9 281 71.2
Gohir.D08G190800 Gossypium hirsutum HOM05D007062 ORTHO05D008941 9.5e-62 241.1 281 66.5
AL1G23540 Arabidopsis lyrata HOM05D007062 ORTHO05D008941 1.2e-61 240.7 281 70.8
PGR031G1282 Punica granatum HOM05D007062 ORTHO05D008941 1.2e-61 240.7 264 62.9
Thecc.03G257500 Theobroma cacao HOM05D007062 ORTHO05D008941 1.6e-61 240.4 288 64.9
AT1G12250 Arabidopsis thaliana HOM05D007062 ORTHO05D008941 2.8e-61 239.6 281 70.8
Hund11577 Selenicereus undatus HOM05D007062 ORTHO05D008941 2.8e-61 239.6 272 69.9
Medtr5g012110 Medicago truncatula HOM05D007062 ORTHO05D008941 8.1e-61 238.0 267 73.4
RcHm_v2.0_Chr7g0202221 Rosa chinensis HOM05D007062 ORTHO05D008941 8.1e-61 238.0 281 73.0
Zm00001eb248670 Zea mays HOM05D007062 ORTHO05D008941 8.1e-61 238.0 260 73.8
Aa31LG1G2430 Aethionema arabicum HOM05D007062 ORTHO05D008941 4.0e-60 235.7 289 60.9
Gorai.004G200900 Gossypium raimondii HOM05D007062 ORTHO05D008941 4.0e-60 235.7 281 62.3
THA.LOC104818475 Tarenaya hassleriana HOM05D007062 ORTHO05D008941 8.9e-60 234.6 286 67.8
EL10Ac5g13006 Beta vulgaris HOM05D007062 ORTHO05D008941 2.0e-59 233.4 270 59.6
Sc06g0007370 Simmondsia chinensis HOM05D007062 ORTHO05D008941 2.6e-59 233.0 270 71.5
FvH4_5g00330 Fragaria vesca HOM05D007062 ORTHO05D008941 3.4e-59 232.6 281 71.2
HPP92_003260 Vanilla planifolia HOM05D007062 ORTHO05D008941 7.6e-59 231.5 231 80.5
ATR0568G204 Amborella trichopoda HOM05D007062 ORTHO05D008941 1.7e-58 230.3 196 91.8
FAN08G1089 Fragaria x ananassa HOM05D007062 ORTHO05D008941 2.9e-58 229.6 294 68.4
FAN18G0001 Fragaria x ananassa HOM05D007062 ORTHO05D008941 2.9e-58 229.6 294 68.4
HanXRQChr02g0049591 Helianthus annuus HOM05D007062 ORTHO05D008941 2.9e-58 229.6 308 66.9
MD06G1065500 Malus domestica HOM05D007062 ORTHO05D008941 4.9e-58 228.8 283 71.4
Aqoxy5G03933 Aquilegia oxysepala HOM05D007062 ORTHO05D008941 1.2e-56 224.2 226 81.0
vmacro05405 Vaccinium macrocarpon HOM05D007062 ORTHO05D008941 2.7e-56 223.0 196 85.7
Os02g0643500 Oryza sativa ssp. japonica HOM05D007062 ORTHO05D008941 4.6e-56 222.2 215 71.6
CANSAT21G0465 Cannabis sativa HOM05D007062 ORTHO05D008941 6.0e-56 221.9 281 70.5
SEGI_22381 Sequoiadendron giganteum HOM05D007062 ORTHO05D008941 1.7e-55 220.3 251 73.3
FAN04G1528 Fragaria x ananassa HOM05D007062 ORTHO05D008941 3.0e-55 219.5 254 59.8
Sabra03G0078200 Salix brachista HOM05D007062 ORTHO05D008941 2.0e-51 206.8 364 40.7
Gohir.A08G172400 Gossypium hirsutum HOM05D007062 ORTHO05D008941 6.4e-50 201.8 193 73.6
Mapoly0083s0077 Marchantia polymorpha HOM05D007062 ORTHO05D008941 1.4e-49 200.7 225 63.6
AUR62007471 Chenopodium quinoa HOM05D007062 ORTHO05D008941 1.9e-49 200.3 182 85.2
CBR_g19734 Chara braunii HOM05D007062 ORTHO05D008941 1.1e-46 191.0 212 62.7
SMO137G0193 Selaginella moellendorffii HOM05D007062 ORTHO05D008941 1.9e-46 190.3 216 61.1
Pp3c21_17930 Physcomitrium patens HOM05D007062 ORTHO05D008941 3.6e-45 186.0 226 69.0
FAN13G1422 Fragaria x ananassa HOM05D007062 ORTHO05D008941 9.0e-44 181.4 217 56.2
Glyma.01G211100 Glycine max HOM05D007062 ORTHO05D008941 3.8e-42 176.0 233 49.8
COL.COLO4_37223 Corchorus olitorius HOM05D007062 ORTHO05D008941 4.2e-41 172.6 94 88.3
Hma1.2p1_1691F.1_g297810 Hydrangea macrophylla HOM05D007062 ORTHO05D008941 5.4e-41 172.2 92 88.0
AUR62039929 Chenopodium quinoa HOM05D007062 ORTHO05D008941 7.4e-38 161.8 94 83.0
AUR62043761 Chenopodium quinoa HOM05D007062 ORTHO05D008941 7.4e-38 161.8 94 83.0
DCAR_004919 Daucus carota HOM05D007062 ORTHO05D008941 9.6e-38 161.4 88 86.4
Hma1.2p1_1691F.1_g297800 Hydrangea macrophylla HOM05D007062 ORTHO05D008941 2.8e-37 159.8 85 87.1
CDE04G1356 Ceratophyllum demersum HOM05D007062 ORTHO05D008941 6.2e-37 158.7 85 88.2
CARHR012560 Cardamine hirsuta HOM05D007062 ORTHO05D008941 6.9e-36 155.2 85 87.1
Dinv39100 Davidia involucrata HOM05D007062 ORTHO05D008941 4.5e-35 152.5 191 53.4
Cfa012777 Carpinus fangiana HOM05D007062 ORTHO05D008941 6.7e-31 138.7 213 70.9
AagrBONN_evm.TU.Sc2ySwM_228.1920 Anthoceros agrestis HOM05D000741 ORTHO05D000506 2.2e-26 123.6 184 61.4
Haze_08582 Corylus avellana HOM05D007062 ORTHO05D008941 6.5e-26 122.1 143 61.5
Psat2g178680 Pisum sativum HOM05D007062 ORTHO05D008941 9.3e-25 118.2 202 67.3
Nn6g34047 Nelumbo nucifera HOM05D007062 ORTHO05D008941 1.9e-22 110.5 117 55.6
GSVIVG01001268001 Vitis vinifera HOM05D007062 ORTHO05D008941 2.5e-22 110.2 122 56.6
CDE04G0607 Ceratophyllum demersum HOM05D007062 ORTHO05D008941 3.1e-20 103.2 68 76.5
CAN.G1293.1 Capsicum annuum HOM05D007062 ORTHO05D008941 1.2e-19 101.3 69 76.8
COL.COLO4_37221 Corchorus olitorius HOM05D007062 ORTHO05D008941 3.9e-15 86.3 62 72.6
Cre17.g721700 Chlamydomonas reinhardtii HOM05D007062 ORTHO05D008941 1.5e-14 84.3 200 43.0
Lj8A257G61 Lonicera japonica HOM05D007062 ORTHO05D008941 5.7e-14 82.4 45 86.7
Rhsim10G0100700 Rhododendron simsii HOM05D000726 ORTHO05D007554 4.8e-13 79.3 93 52.7
MCO12G419 Micromonas commoda HOM05D007062 ORTHO05D008941 5.9e-11 72.4 44 75.0
SEGI_25676 Sequoiadendron giganteum HOM05D007062 ORTHO05D008941 2.1e-08 63.9 40 77.5
MCO04G309 Micromonas commoda HOM05D007062 ORTHO05D008941 1.4e-07 61.2 53 60.4


User provided reference genes

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