Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400004754 Solanum tuberosum HOM05D007638 ORTHO05D009805 1.4e-195 686.0 340 100.0
Sopen08g027220 Solanum pennellii HOM05D007638 ORTHO05D009805 9.4e-187 656.8 338 96.2
Solyc08g078750.4 Solanum lycopersicum HOM05D007638 ORTHO05D009805 3.6e-186 654.8 338 95.6
CAN.G1218.20 Capsicum annuum HOM05D007638 ORTHO05D009805 1.2e-165 586.6 339 86.4
Nitab4.5_0008481g0020 Nicotiana tabacum HOM05D007638 ORTHO05D009805 1.4e-137 493.4 340 75.6
Peaxi162Scf00002g00171 Petunia axillaris HOM05D007638 ORTHO05D009805 5.0e-132 474.9 317 78.5
Nitab4.5_0000312g0180 Nicotiana tabacum HOM05D007638 ORTHO05D009805 3.2e-118 429.1 265 80.4
Dinv39130 Davidia involucrata HOM05D007638 ORTHO05D009805 2.0e-112 409.8 349 59.6
Oeu017018.1 Olea europaea HOM05D007638 ORTHO05D009805 3.2e-102 375.9 349 55.6
Cc08_g12610 Coffea canephora HOM05D007638 ORTHO05D009805 7.3e-99 364.8 353 56.1
Hma1.2p1_2238F.1_g317800 Hydrangea macrophylla HOM05D007638 ORTHO05D009805 8.1e-98 361.3 339 53.4
GSVIVG01001312001 Vitis vinifera HOM05D007638 ORTHO05D009805 1.7e-95 353.6 340 54.4
TWI15G0131 Tripterygium wilfordii HOM05D007638 ORTHO05D009805 1.9e-91 340.1 339 52.2
HanXRQChr17g0549771 Helianthus annuus HOM05D007638 ORTHO05D009805 6.2e-90 335.1 348 51.7
Thecc.03G253300 Theobroma cacao HOM05D007638 ORTHO05D009805 5.3e-89 332.0 344 51.5
QL12p012553 Quercus lobata HOM05D007638 ORTHO05D009805 7.6e-88 328.2 341 51.9
Prupe.5G071400 Prunus persica HOM05D007638 ORTHO05D009805 1.3e-87 327.4 348 52.9
SGA_v2.0_scaffold120G32873 Striga asiatica HOM05D007638 ORTHO05D009805 4.9e-87 325.5 411 45.7
Cfa012740 Carpinus fangiana HOM05D007638 ORTHO05D009805 1.9e-86 323.6 356 51.1
Gohir.D09G190600 Gossypium hirsutum HOM05D007638 ORTHO05D009805 2.5e-86 323.2 342 49.7
Gorai.006G213300 Gossypium raimondii HOM05D007638 ORTHO05D009805 2.5e-86 323.2 342 49.7
Rhsim09G0039100 Rhododendron simsii HOM05D007638 ORTHO05D009805 4.6e-85 318.9 429 43.1
MD06G1060400 Malus domestica HOM05D007638 ORTHO05D009805 6.0e-85 318.5 350 51.4
Migut.A00967 Erythranthe guttata HOM05D007638 ORTHO05D009805 1.8e-84 317.0 351 50.4
Gohir.A09G196000 Gossypium hirsutum HOM05D007638 ORTHO05D009805 5.1e-84 315.5 342 48.5
FvH4_5g18700 Fragaria vesca HOM05D007638 ORTHO05D009805 6.7e-84 315.1 343 51.0
TAR636G1390 Trochodendron aralioides HOM05D007638 ORTHO05D009805 6.7e-84 315.1 343 53.1
Duzib084G1003 Durio zibethinus HOM05D007638 ORTHO05D009805 8.7e-84 314.7 350 49.4
Potri.003G110600 Populus trichocarpa HOM05D007638 ORTHO05D009805 1.1e-83 314.3 348 50.0
Atru.chr9.1327 Acer truncatum HOM05D007638 ORTHO05D009805 4.3e-83 312.4 346 50.6
Sc07g0009320 Simmondsia chinensis HOM05D007638 ORTHO05D009805 4.3e-83 312.4 343 49.3
Manes.02G038700 Manihot esculenta HOM05D007638 ORTHO05D009805 3.7e-82 309.3 345 48.7
Sabra03G0076700 Salix brachista HOM05D007638 ORTHO05D009805 1.8e-81 307.0 348 50.9
Hund14529 Selenicereus undatus HOM05D007638 ORTHO05D009805 1.8e-81 307.0 346 47.7
CiPaw.12G109000 Carya illinoinensis HOM05D007638 ORTHO05D009805 2.6e-80 303.1 341 49.6
Nn1g01039 Nelumbo nucifera HOM05D007638 ORTHO05D009805 2.6e-80 303.1 346 50.3
Sed0016401 Sechium edule HOM05D007638 ORTHO05D009805 1.3e-79 300.8 341 49.9
FAN13G2113 Fragaria x ananassa HOM05D007638 ORTHO05D009805 6.5e-79 298.5 320 51.6
CANSAT21G1304 Cannabis sativa HOM05D007638 ORTHO05D009805 1.4e-78 297.4 346 47.4
Ca_21958_v3 Cicer arietinum L. HOM05D007638 ORTHO05D009805 4.2e-78 295.8 349 48.4
Lj4g0022413 Lotus japonicus HOM05D007638 ORTHO05D009805 7.1e-78 295.0 342 47.1
RcHm_v2.0_Chr7g0202991 Rosa chinensis HOM05D007638 ORTHO05D009805 7.1e-78 295.0 346 47.7
Lalb_Chr16g0389341 Lupinus albus HOM05D007638 ORTHO05D009805 4.6e-77 292.4 350 47.1
arahy.Tifrunner.gnm1.ann1.UY0NCU Arachis hypogaea HOM05D007638 ORTHO05D009805 3.9e-76 289.3 352 46.9
CsaV3_5G004170 Cucumis sativus L. HOM05D007638 ORTHO05D009805 5.1e-76 288.9 344 47.7
Lsat_1_v5_gn_3_541 Lactuca sativa HOM05D007638 ORTHO05D009805 1.1e-75 287.7 349 49.0
MSTRG.25529 Avicennia marina HOM05D007638 ORTHO05D009805 1.9e-75 287.0 262 53.8
Psat4g071600 Pisum sativum HOM05D007638 ORTHO05D009805 3.3e-75 286.2 344 46.5
EL10Ac5g13054 Beta vulgaris HOM05D007638 ORTHO05D009805 9.7e-75 284.6 352 46.9
arahy.Tifrunner.gnm1.ann1.E4IRCP Arachis hypogaea HOM05D007638 ORTHO05D009805 1.3e-74 284.3 352 46.6
DCAR_008487 Daucus carota HOM05D007638 ORTHO05D009805 1.4e-73 280.8 365 46.6
Ciclev10020230m.g Citrus clementina HOM05D007638 ORTHO05D009805 1.5e-72 277.3 352 46.6
Ah.02g116770 Amaranthus hybridus HOM05D007638 ORTHO05D009805 2.0e-72 276.9 347 44.4
Glyma.05G058500 Glycine max HOM05D007638 ORTHO05D009805 5.9e-72 275.4 362 44.5
TPR.G37700 Trifolium pratense HOM05D007638 ORTHO05D009805 1.2e-69 267.7 342 45.0
Hma1.2p1_3173F.1_g333580 Hydrangea macrophylla HOM05D007638 ORTHO05D009805 1.0e-68 264.6 354 42.9
Actinidia02124 Actinidia chinensis HOM05D007638 ORTHO05D009805 4.3e-67 259.2 365 45.5
PSO781G0038 Papaver somniferum HOM05D007638 ORTHO05D009805 1.7e-66 257.3 352 44.9
ATR1153G083 Amborella trichopoda HOM05D007638 ORTHO05D009805 2.8e-66 256.5 342 43.6
THA.LOC104812781 Tarenaya hassleriana HOM05D007638 ORTHO05D009805 2.4e-65 253.4 368 41.0
FAN08G1927 Fragaria x ananassa HOM05D007638 ORTHO05D009805 1.2e-64 251.1 343 44.0
vmacro00554 Vaccinium macrocarpon HOM05D007638 ORTHO05D009805 7.7e-64 248.4 379 41.2
AUR62007504 Chenopodium quinoa HOM05D007638 ORTHO05D009805 2.2e-63 246.9 347 42.1
ClCG01G003990 Citrullus lanatus HOM05D007638 ORTHO05D009805 2.5e-62 243.4 314 45.2
Eucgr.D02067 Eucalyptus grandis HOM05D007638 ORTHO05D009805 2.1e-61 240.4 270 48.9
PGR031G3001 Punica granatum HOM05D007638 ORTHO05D009805 4.7e-61 239.2 311 46.9
Eucgr.D02064 Eucalyptus grandis HOM05D007638 ORTHO05D009805 1.0e-60 238.0 338 42.6
PSO541G0423 Papaver somniferum HOM05D007638 ORTHO05D009805 9.7e-59 231.5 328 42.7
Cpa.g.sc29.142 Carica papaya HOM05D007638 ORTHO05D009805 3.8e-55 219.5 310 43.5
FAN18G0664 Fragaria x ananassa HOM05D007638 ORTHO05D009805 8.5e-55 218.4 233 48.9
Aqoxy7G00749 Aquilegia oxysepala HOM05D007638 ORTHO05D009805 2.7e-53 213.4 341 39.9
MELO3C033998.2 Cucumis melo HOM05D007638 ORTHO05D009805 6.7e-52 208.8 319 43.6
SEGI_06661 Sequoiadendron giganteum HOM05D007638 ORTHO05D009805 1.1e-51 208.0 376 37.2
Aa31LG2G12650 Aethionema arabicum HOM05D007638 ORTHO05D009805 1.3e-47 194.5 341 36.4
DCAR_008488 Daucus carota HOM05D007638 ORTHO05D009805 3.8e-47 193.0 183 50.8
Sp7g15100 Schrenkiella parvula HOM05D007638 ORTHO05D009805 8.0e-45 185.3 318 38.4
CDE11G1220 Ceratophyllum demersum HOM05D007638 ORTHO05D009805 2.0e-43 180.6 348 35.9
Pp3c9_14850 Physcomitrium patens HOM05D007638 ORTHO05D009805 2.8e-42 176.8 379 33.0
AUR62039957 Chenopodium quinoa HOM05D007638 ORTHO05D009805 4.8e-42 176.0 346 35.5
CBR_g20284 Chara braunii HOM05D007638 ORTHO05D009805 6.1e-37 159.1 239 35.6
Haze_07891 Corylus avellana HOM05D007638 ORTHO05D009805 9.8e-35 151.8 266 42.1
AagrBONN_evm.TU.Sc2ySwM_228.4592 Anthoceros agrestis HOM05D007638 ORTHO05D009805 9.1e-33 145.2 330 32.7
CSS0041058 Camellia sinensis var. sinensis HOM05D007638 ORTHO05D009805 6.4e-26 122.5 117 56.4
Eucgr.L01520 Eucalyptus grandis HOM05D007638 ORTHO05D009805 5.6e-14 82.8 118 44.1
CBR_g3873 Chara braunii HOM05D000032 ORTHO05D009383 1.6e-13 81.3 64 54.7
Eucgr.K02338 Eucalyptus grandis HOM05D000032 ORTHO05D009383 1.4e-12 78.2 97 43.3
FvH4_6g35850 Fragaria vesca HOM05D000032 ORTHO05D009383 1.4e-12 78.2 59 59.3
FAN14G3162 Fragaria x ananassa HOM05D000032 ORTHO05D009383 1.4e-12 78.2 59 59.3
FAN14G3671 Fragaria x ananassa HOM05D000032 ORTHO05D009383 1.4e-12 78.2 59 59.3
RcHm_v2.0_Chr2g0147891 Rosa chinensis HOM05D000032 ORTHO05D009383 1.8e-12 77.8 53 62.3
FAN02G2103 Fragaria x ananassa HOM05D000032 ORTHO05D009383 2.3e-12 77.4 59 59.3
FAN05G0348 Fragaria x ananassa HOM05D000032 ORTHO05D009383 2.3e-12 77.4 59 59.3
Prupe.3G315400 Prunus persica HOM05D001005 ORTHO05D000836 3.1e-12 77.0 53 64.2
Eucgr.L03255 Eucalyptus grandis HOM05D000032 ORTHO05D009383 4.0e-12 76.6 93 44.1
Manes.04G096700 Manihot esculenta HOM05D000032 ORTHO05D009383 4.0e-12 76.6 53 64.2
Sc14g0008440 Simmondsia chinensis HOM05D000032 ORTHO05D009383 4.0e-12 76.6 66 56.1
ATR0824G065 Amborella trichopoda HOM05D000032 ORTHO05D009383 5.2e-12 76.3 64 53.1
TWI32G0219 Tripterygium wilfordii HOM05D000032 ORTHO05D009383 5.2e-12 76.3 65 55.4
unitig_0.g181 Utricularia gibba HOM05D000032 ORTHO05D009383 5.2e-12 76.3 130 36.2
Glyma.02G068300 Glycine max HOM05D000032 ORTHO05D009383 6.8e-12 75.9 80 47.5
Lalb_Chr03g0043781 Lupinus albus HOM05D000032 ORTHO05D009383 6.8e-12 75.9 54 53.7
CARHR074860 Cardamine hirsuta HOM05D000032 ORTHO05D009383 1.2e-11 75.1 48 64.6
Cpa.g.sc17.215 Carica papaya HOM05D000032 ORTHO05D009383 1.2e-11 75.1 53 62.3
DCAR_008449 Daucus carota HOM05D000032 ORTHO05D009383 1.2e-11 75.1 96 42.7
Lj1A470G20 Lonicera japonica HOM05D000032 ORTHO05D009383 1.2e-11 75.1 79 50.6
Lj1A478G35 Lonicera japonica HOM05D000032 ORTHO05D009383 1.2e-11 75.1 79 50.6
Nn3g18407 Nelumbo nucifera HOM05D000032 ORTHO05D009383 1.2e-11 75.1 63 55.6
PGR044G2709 Punica granatum HOM05D000032 ORTHO05D009383 1.2e-11 75.1 52 63.5
Ah.15g094020 Amaranthus hybridus HOM05D000032 ORTHO05D009383 1.5e-11 74.7 145 33.8
MSTRG.18394 Avicennia marina HOM05D000032 ORTHO05D009383 1.5e-11 74.7 63 60.3
THA.LOC104823368 Tarenaya hassleriana HOM05D000032 ORTHO05D009383 1.5e-11 74.7 52 59.6
AL3G10020 Arabidopsis lyrata HOM05D000032 ORTHO05D009383 2.0e-11 74.3 54 57.4
AUR62001157 Chenopodium quinoa HOM05D000032 ORTHO05D009383 2.0e-11 74.3 54 55.6
AUR62016519 Chenopodium quinoa HOM05D000032 ORTHO05D009383 2.0e-11 74.3 54 55.6
Migut.D00539 Erythranthe guttata HOM05D000032 ORTHO05D009383 2.0e-11 74.3 78 46.2
MD17G1003800 Malus domestica HOM05D000032 ORTHO05D009383 2.0e-11 74.3 72 50.0
Aa31LG5G11250 Aethionema arabicum HOM05D000032 ORTHO05D009383 2.6e-11 73.9 58 55.2
FAN09G2555 Fragaria x ananassa HOM05D000032 ORTHO05D009383 2.6e-11 73.9 59 57.6
Glyma.16G149800 Glycine max HOM05D000032 ORTHO05D009383 2.6e-11 73.9 80 47.5
PSO384G0785 Papaver somniferum HOM05D000032 ORTHO05D009383 2.6e-11 73.9 47 66.0
Sopen01g002340 Solanum pennellii HOM05D000032 ORTHO05D009383 2.6e-11 73.9 51 66.7
SGA_v2.0_scaffold8G04635 Striga asiatica HOM05D000032 ORTHO05D009383 2.6e-11 73.9 51 64.7
vmacro21760 Vaccinium macrocarpon HOM05D000032 ORTHO05D009383 2.6e-11 73.9 66 56.1
Zm00001eb235630 Zea mays HOM05D000032 ORTHO05D009383 2.6e-11 73.9 76 51.3
Sp3g00020 Schrenkiella parvula HOM05D000032 ORTHO05D009383 3.4e-11 73.6 52 59.6
Solyc01g006340.3 Solanum lycopersicum HOM05D000032 ORTHO05D009383 3.4e-11 73.6 51 64.7
PGSC0003DMG400032150 Solanum tuberosum HOM05D000032 ORTHO05D009383 3.4e-11 73.6 51 64.7
Potri.014G140100 Populus trichocarpa HOM05D000032 ORTHO05D009383 4.4e-11 73.2 47 66.0
GSVIVG01032945001 Vitis vinifera HOM05D007638 ORTHO05D009383 5.8e-11 72.8 48 66.7
Atru.chr12.440 Acer truncatum HOM05D000032 ORTHO05D009383 7.5e-11 72.4 54 64.8
MBI11_g17278_MAGBIO Magnolia biondii HOM05D000032 ORTHO05D009383 7.5e-11 72.4 43 67.4
CSS0019503 Camellia sinensis var. sinensis HOM05D000032 ORTHO05D009383 9.8e-11 72.0 40 72.5
CSS0028588 Camellia sinensis var. sinensis HOM05D000032 ORTHO05D009383 9.8e-11 72.0 40 72.5
ClCG05G012450 Citrullus lanatus HOM05D000032 ORTHO05D009383 9.8e-11 72.0 139 30.9
MELO3C014755.2 Cucumis melo HOM05D000032 ORTHO05D009383 9.8e-11 72.0 52 59.6
Lsat_1_v5_gn_2_101321 Lactuca sativa HOM05D000032 ORTHO05D009383 9.8e-11 72.0 51 58.8
Peaxi162Scf00192g00012 Petunia axillaris HOM05D000032 ORTHO05D009383 9.8e-11 72.0 57 57.9
arahy.Tifrunner.gnm1.ann1.8UB6M3 Arachis hypogaea HOM05D000032 ORTHO05D009383 1.3e-10 71.6 51 60.8
Cfa010055 Carpinus fangiana HOM05D001005 ORTHO05D000836 1.3e-10 71.6 55 54.5
ECA238G2389 Erigeron canadensis HOM05D000032 ORTHO05D009383 1.3e-10 71.6 62 59.7
VMungo0464G1688 Vigna mungo HOM05D000032 ORTHO05D009383 1.3e-10 71.6 67 50.7
Aqoxy7G03583 Aquilegia oxysepala HOM05D000032 ORTHO05D009383 1.7e-10 71.2 43 65.1
CDE07G0397 Ceratophyllum demersum HOM05D000032 ORTHO05D009383 1.7e-10 71.2 43 65.1
Cc01_g03330 Coffea canephora HOM05D000032 ORTHO05D009383 1.7e-10 71.2 60 56.7
CsaV3_3G020080 Cucumis sativus L. HOM05D000032 ORTHO05D009383 1.7e-10 71.2 55 56.4
QL02p068178 Quercus lobata HOM05D000032 ORTHO05D009383 1.7e-10 71.2 59 52.5
AagrBONN_evm.TU.Sc2ySwM_369.192 Anthoceros agrestis HOM05D000032 ORTHO05D009383 2.2e-10 70.9 54 57.4
AT3G02065 Arabidopsis thaliana HOM05D000032 ORTHO05D009383 2.2e-10 70.9 54 55.6
EL10Ac7g17945 Beta vulgaris HOM05D000032 ORTHO05D009383 2.2e-10 70.9 75 44.0
Medtr6g033070 Medicago truncatula HOM05D000032 ORTHO05D009383 2.2e-10 70.9 56 55.4
Nitab4.5_0003436g0100 Nicotiana tabacum HOM05D000032 ORTHO05D009383 2.2e-10 70.9 55 58.2
TPR.G6050 Trifolium pratense HOM05D000032 ORTHO05D009383 2.2e-10 70.9 49 55.1
CiPaw.14G093500 Carya illinoinensis HOM05D000032 ORTHO05D009383 2.9e-10 70.5 84 40.5
Rhsim13G0227500 Rhododendron simsii HOM05D006358 ORTHO05D009383 2.9e-10 70.5 40 70.0
Carub.0003s0002 Capsella rubella HOM05D000032 ORTHO05D009383 3.7e-10 70.1 52 57.7
Ca_04506_v3 Cicer arietinum L. HOM05D000032 ORTHO05D009383 3.7e-10 70.1 58 51.7
Hma1.2p1_0098F.1_g048240 Hydrangea macrophylla HOM05D000032 ORTHO05D009383 3.7e-10 70.1 43 62.8
Sabra14G0105500 Salix brachista HOM05D000032 ORTHO05D009383 3.7e-10 70.1 47 63.8
arahy.Tifrunner.gnm1.ann1.BLPY9G Arachis hypogaea HOM05D007638 ORTHO05D009383 4.9e-10 69.7 107 37.4
Ciclev10017882m.g Citrus clementina HOM05D000032 ORTHO05D009383 4.9e-10 69.7 64 46.9
Pp3c8_12050 Physcomitrium patens HOM05D000032 ORTHO05D009383 6.4e-10 69.3 69 47.8
CAN.G140.9 Capsicum annuum HOM05D000032 ORTHO05D009383 8.3e-10 68.9 55 56.4
HanXRQChr14g0453351 Helianthus annuus HOM05D000032 ORTHO05D009383 8.3e-10 68.9 44 61.4
PSO339G1569 Papaver somniferum HOM05D000032 ORTHO05D009383 8.3e-10 68.9 47 61.7
TAR633G1362 Trochodendron aralioides HOM05D000032 ORTHO05D009383 8.3e-10 68.9 51 58.8
Duzib187G1127 Durio zibethinus HOM05D000032 ORTHO05D009383 1.1e-09 68.6 67 46.3
Mapoly0135s0036 Marchantia polymorpha HOM05D000032 ORTHO05D009383 1.1e-09 68.6 68 45.6
Thecc.04G052100 Theobroma cacao HOM05D000032 ORTHO05D009383 1.1e-09 68.6 47 57.4
arahy.Tifrunner.gnm1.ann1.U3NDHF Arachis hypogaea HOM05D000032 ORTHO05D009383 1.9e-09 67.8 51 56.9
Thhalv10020567m.g Eutrema salsugineum HOM05D000032 ORTHO05D009383 1.9e-09 67.8 48 60.4
Psat1g014560 Pisum sativum HOM05D000032 ORTHO05D009383 2.4e-09 67.4 40 62.5
Lj3g0015614 Lotus japonicus HOM05D000032 ORTHO05D009383 3.2e-09 67.0 43 55.8
Gohir.D10G081800 Gossypium hirsutum HOM05D000032 ORTHO05D009383 4.1e-09 66.6 48 60.4
COL.COLO4_13406 Corchorus olitorius HOM05D000032 ORTHO05D009383 7.1e-09 65.9 41 65.9
Gohir.A10G069700 Gossypium hirsutum HOM05D000032 ORTHO05D009383 9.2e-09 65.5 48 58.3
SHI50144 Sapria himalayana HOM05D000032 ORTHO05D009383 9.2e-09 65.5 51 52.9
Gorai.011G088700 Gossypium raimondii HOM05D000032 ORTHO05D009383 2.1e-08 64.3 67 41.8
Actinidia01839 Actinidia chinensis HOM05D000032 ORTHO05D009383 3.0e-07 60.5 90 42.2
CSS0012229 Camellia sinensis var. sinensis HOM05D000032 ORTHO05D009383 6.6e-07 59.3 60 55.0
EL10Ac9g22788 Beta vulgaris HOM05D000032 ORTHO05D009383 1.5e-06 58.2 95 34.7
Haze_14989 Corylus avellana HOM05D000032 ORTHO05D009383 1.9e-06 57.8 49 53.1
Migut.A00966 Erythranthe guttata HOM05D007638 ORTHO05D009805 4.3e-06 56.6 60 51.7
SMO201G0222 Selaginella moellendorffii HOM05D000032 ORTHO05D009383 7.3e-06 55.8 45 51.1
SEGI_30518 Sequoiadendron giganteum HOM05D007638 ORTHO05D009805 9.5e-06 55.5 95 41.1


User provided reference genes

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