Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400004411 Solanum tuberosum HOM05D004753 ORTHO05D005920 5.8e-52 207.2 101 100.0
Solyc01g096800.3 Solanum lycopersicum HOM05D004753 ORTHO05D005920 2.6e-20 102.1 53 94.3
Sopen01g040500 Solanum pennellii HOM05D004753 ORTHO05D005920 2.6e-20 102.1 53 94.3
PGSC0003DMG401027528 Solanum tuberosum HOM05D004753 ORTHO05D005920 2.6e-20 102.1 53 94.3
PSO170G0569 Papaver somniferum HOM05D004753 ORTHO05D005920 2.9e-19 98.6 53 90.6
PSO210G3006 Papaver somniferum HOM05D004753 ORTHO05D005920 2.9e-19 98.6 53 90.6
PSO832G3876 Papaver somniferum HOM05D004753 ORTHO05D005920 8.5e-19 97.1 53 88.7
MBI18_g06877_MAGBIO Magnolia biondii HOM05D004753 ORTHO05D005920 1.4e-18 96.3 53 86.8
PSO017G3074 Papaver somniferum HOM05D004753 ORTHO05D005920 1.9e-18 95.9 53 88.7
Dinv37873 Davidia involucrata HOM05D004753 ORTHO05D005920 2.5e-18 95.5 53 86.8
HanXRQChr08g0207921 Helianthus annuus HOM05D004753 ORTHO05D005920 2.5e-18 95.5 53 86.8
HanXRQChr12g0368811 Helianthus annuus HOM05D004753 ORTHO05D005920 2.5e-18 95.5 53 86.8
CAN.G134.43 Capsicum annuum HOM05D004753 ORTHO05D005920 3.2e-18 95.1 53 88.7
Lj2A1194G52 Lonicera japonica HOM05D004753 ORTHO05D005920 3.2e-18 95.1 53 84.9
Rhsim01G0243400 Rhododendron simsii HOM05D004753 ORTHO05D005920 3.2e-18 95.1 54 83.3
PGR044G2668 Punica granatum HOM05D004753 ORTHO05D005920 4.2e-18 94.7 53 83.0
Cc09_g07750 Coffea canephora HOM05D004753 ORTHO05D005920 5.5e-18 94.4 53 84.9
MD03G1288000 Malus domestica HOM05D004753 ORTHO05D005920 5.5e-18 94.4 53 83.0
MD11G1310300 Malus domestica HOM05D004753 ORTHO05D005920 5.5e-18 94.4 53 83.0
SalBow3G1002 Salvia bowleyana HOM05D004753 ORTHO05D005920 5.5e-18 94.4 53 84.9
vmacro15009 Vaccinium macrocarpon HOM05D004753 ORTHO05D005920 5.5e-18 94.4 53 84.9
ATR0584G246 Amborella trichopoda HOM05D004753 ORTHO05D005920 7.2e-18 94.0 53 83.0
MSTRG.18152 Avicennia marina HOM05D004753 ORTHO05D005920 7.2e-18 94.0 53 83.0
Eucgr.K03479 Eucalyptus grandis HOM05D004753 ORTHO05D005920 7.2e-18 94.0 53 83.0
SGA_v2.0_scaffold1G00368 Striga asiatica HOM05D004753 ORTHO05D005920 7.2e-18 94.0 53 84.9
SGA_v2.0_scaffold2G01394 Striga asiatica HOM05D004753 ORTHO05D005920 7.2e-18 94.0 53 84.9
Nitab4.5_0002687g0080 Nicotiana tabacum HOM05D004753 ORTHO05D005920 9.4e-18 93.6 53 84.9
Nitab4.5_0008999g0010 Nicotiana tabacum HOM05D004753 ORTHO05D005920 9.4e-18 93.6 53 84.9
Peaxi162Scf01084g00120 Petunia axillaris HOM05D004753 ORTHO05D005920 9.4e-18 93.6 53 84.9
Aqoxy2G02947 Aquilegia oxysepala HOM05D004753 ORTHO05D005920 1.2e-17 93.2 53 84.9
CSS0011058 Camellia sinensis var. sinensis HOM05D004753 ORTHO05D005920 1.2e-17 93.2 53 83.0
ClCG10G010920 Citrullus lanatus HOM05D004753 ORTHO05D005920 1.2e-17 93.2 53 83.0
Haze_04935 Corylus avellana HOM05D004753 ORTHO05D005920 1.2e-17 93.2 53 83.0
Haze_24929 Corylus avellana HOM05D004753 ORTHO05D005920 1.2e-17 93.2 53 83.0
Nn3g21484 Nelumbo nucifera HOM05D004753 ORTHO05D005920 1.2e-17 93.2 53 83.0
Oeu011458.1 Olea europaea HOM05D004753 ORTHO05D005920 1.2e-17 93.2 53 83.0
Oeu046682.2 Olea europaea HOM05D004753 ORTHO05D005920 1.2e-17 93.2 53 83.0
Prupe.8G261200 Prunus persica HOM05D004753 ORTHO05D005920 1.2e-17 93.2 53 81.1
QL09p032163 Quercus lobata HOM05D004753 ORTHO05D005920 1.2e-17 93.2 53 83.0
Sabra14G0096300 Salix brachista HOM05D004753 ORTHO05D005920 1.2e-17 93.2 53 83.0
Sed0000474 Sechium edule HOM05D004753 ORTHO05D005920 1.2e-17 93.2 53 83.0
CANSAT54G1658 Cannabis sativa HOM05D004753 ORTHO05D005920 1.6e-17 92.8 53 81.1
Sabra02G0154600 Salix brachista HOM05D004753 ORTHO05D005920 2.1e-17 92.4 53 83.0
THA.LOC104818291 Tarenaya hassleriana HOM05D004753 ORTHO05D005920 2.1e-17 92.4 53 83.0
TAR636G3371 Trochodendron aralioides HOM05D004753 ORTHO05D005920 2.1e-17 92.4 53 79.2
unitig_26.g10170 Utricularia gibba HOM05D004753 ORTHO05D005920 2.1e-17 92.4 53 81.1
CiPaw.14G100000 Carya illinoinensis HOM05D004753 ORTHO05D005920 2.7e-17 92.0 53 81.1
Ciclev10023300m.g Citrus clementina HOM05D004753 ORTHO05D005920 2.7e-17 92.0 53 81.1
Potri.014G129700 Populus trichocarpa HOM05D004753 ORTHO05D005920 2.7e-17 92.0 53 81.1
GSVIVG01028012001 Vitis vinifera HOM05D004753 ORTHO05D005920 2.7e-17 92.0 53 81.1
QL12p028506 Quercus lobata HOM05D004753 ORTHO05D005920 3.6e-17 91.7 53 81.1
HPP92_002997 Vanilla planifolia HOM05D004753 ORTHO05D005920 3.6e-17 91.7 53 84.9
Lsat_1_v5_gn_4_87281 Lactuca sativa HOM05D004753 ORTHO05D005920 4.7e-17 91.3 53 83.0
THA.LOC104801723 Tarenaya hassleriana HOM05D004753 ORTHO05D005920 4.7e-17 91.3 53 81.1
Cpa.g.sc16.169 Carica papaya HOM05D004753 ORTHO05D005920 7.9e-17 90.5 53 81.1
CDE09G1083 Ceratophyllum demersum HOM05D004753 ORTHO05D005920 1.0e-16 90.1 54 75.9
MELO3C017956.2 Cucumis melo HOM05D004753 ORTHO05D005920 1.0e-16 90.1 53 79.2
CsaV3_4G000800 Cucumis sativus L. HOM05D004753 ORTHO05D005920 1.0e-16 90.1 53 79.2
Potri.002G204900 Populus trichocarpa HOM05D004753 ORTHO05D005920 1.0e-16 90.1 53 81.1
TAR365G0243 Trochodendron aralioides HOM05D004753 ORTHO05D005920 1.0e-16 90.1 53 79.2
BcaB02g09600 Brassica carinata HOM05D004753 ORTHO05D005920 1.4e-16 89.7 53 79.2
BcaC01g02428 Brassica carinata HOM05D004753 ORTHO05D005920 1.4e-16 89.7 53 79.2
BcaC04g23436 Brassica carinata HOM05D004753 ORTHO05D005920 1.4e-16 89.7 53 79.2
A06p28420 Brassica napus HOM05D004753 ORTHO05D005920 1.4e-16 89.7 53 79.2
A09p07440 Brassica napus HOM05D004753 ORTHO05D005920 1.4e-16 89.7 53 79.2
C03p65390 Brassica napus HOM05D004753 ORTHO05D005920 1.4e-16 89.7 53 79.2
C09p08350 Brassica napus HOM05D004753 ORTHO05D005920 1.4e-16 89.7 53 79.2
BolC3t18792H Brassica oleracea HOM05D004753 ORTHO05D005920 1.4e-16 89.7 53 79.2
BolC9t53745H Brassica oleracea HOM05D004753 ORTHO05D005920 1.4e-16 89.7 53 79.2
BraA06t25786Z Brassica rapa HOM05D004753 ORTHO05D005920 1.4e-16 89.7 53 79.2
BraA09t36398Z Brassica rapa HOM05D004753 ORTHO05D005920 1.4e-16 89.7 53 79.2
Manes.01G218800 Manihot esculenta HOM05D004753 ORTHO05D005920 1.4e-16 89.7 53 79.2
ECA238G0492 Erigeron canadensis HOM05D004753 ORTHO05D005920 1.8e-16 89.4 53 79.2
Thhalv10004503m.g Eutrema salsugineum HOM05D004753 ORTHO05D005920 3.0e-16 88.6 53 77.4
Sp2g24970 Schrenkiella parvula HOM05D004753 ORTHO05D005920 3.0e-16 88.6 53 77.4
TWI59G0801 Tripterygium wilfordii HOM05D004753 ORTHO05D005920 3.0e-16 88.6 77 62.3
AL8G38530 Arabidopsis lyrata HOM05D004753 ORTHO05D005920 3.9e-16 88.2 53 77.4
AT5G61770 Arabidopsis thaliana HOM05D004753 ORTHO05D005920 3.9e-16 88.2 53 77.4
CARHR275530 Cardamine hirsuta HOM05D004753 ORTHO05D005920 3.9e-16 88.2 53 77.4
DCAR_012396 Daucus carota HOM05D004753 ORTHO05D005920 5.1e-16 87.8 53 79.2
Sc17g0002740 Simmondsia chinensis HOM05D004753 ORTHO05D005920 5.1e-16 87.8 53 75.5
Thecc.01G300100 Theobroma cacao HOM05D004753 ORTHO05D005920 5.1e-16 87.8 53 79.2
Aa31LG11G1720 Aethionema arabicum HOM05D004753 ORTHO05D005920 8.8e-16 87.0 53 77.4
Aqoxy311s002 Aquilegia oxysepala HOM05D004753 ORTHO05D005920 8.8e-16 87.0 53 83.0
BcaNung01420 Brassica carinata HOM05D004753 ORTHO05D005920 1.1e-15 86.7 55 72.7
Atru.chr5.901 Acer truncatum HOM05D004753 ORTHO05D005920 1.5e-15 86.3 53 75.5
Actinidia15830 Actinidia chinensis HOM05D004753 ORTHO05D005920 2.0e-15 85.9 53 81.1
Duzib133G0229 Durio zibethinus HOM05D004753 ORTHO05D005920 2.6e-15 85.5 53 77.4
Gohir.D02G011800 Gossypium hirsutum HOM05D004753 ORTHO05D005920 2.6e-15 85.5 57 70.2
Gohir.D04G081932 Gossypium hirsutum HOM05D004753 ORTHO05D005920 2.6e-15 85.5 57 70.2
Gorai.005G015000 Gossypium raimondii HOM05D004753 ORTHO05D005920 2.6e-15 85.5 57 70.2
Carub.0008s2246 Capsella rubella HOM05D004753 ORTHO05D005920 3.3e-15 85.1 53 73.6
COL.COLO4_23348 Corchorus olitorius HOM05D004753 ORTHO05D005920 4.4e-15 84.7 53 75.5
Duzib138G1754 Durio zibethinus HOM05D004753 ORTHO05D005920 4.4e-15 84.7 53 77.4
Hund05425 Selenicereus undatus HOM05D004753 ORTHO05D005920 4.4e-15 84.7 53 75.5
Gorai.012G092400 Gossypium raimondii HOM05D004753 ORTHO05D005920 1.3e-14 83.2 53 73.6
Gorai.002G117300 Gossypium raimondii HOM05D004753 ORTHO05D005920 1.7e-14 82.8 55 70.9
Gohir.A08G117800 Gossypium hirsutum HOM05D004753 ORTHO05D005920 2.2e-14 82.4 53 73.6
Gorai.004G142400 Gossypium raimondii HOM05D004753 ORTHO05D005920 3.7e-14 81.6 53 73.6
Gohir.D08G138800 Gossypium hirsutum HOM05D004753 ORTHO05D005920 8.2e-14 80.5 53 71.7
Lj3g0027269 Lotus japonicus HOM05D004753 ORTHO05D005920 1.1e-13 80.1 53 71.7
AUR62008626 Chenopodium quinoa HOM05D004753 ORTHO05D005920 1.8e-13 79.3 53 67.9
AUR62033145 Chenopodium quinoa HOM05D004753 ORTHO05D005920 1.8e-13 79.3 53 67.9
Ca_19020_v3 Cicer arietinum L. HOM05D004753 ORTHO05D005920 3.1e-13 78.6 53 69.8
Medtr4g075050 Medicago truncatula HOM05D004753 ORTHO05D005920 9.1e-13 77.0 53 71.7
Mapoly0097s0041 Marchantia polymorpha HOM05D004753 ORTHO05D005920 1.2e-12 76.6 53 60.4
TPR.G32348 Trifolium pratense HOM05D004753 ORTHO05D005920 1.6e-12 76.3 53 69.8
Lalb_Chr01g0001441 Lupinus albus HOM05D004753 ORTHO05D005920 2.0e-12 75.9 53 69.8
SMO331G0088 Selaginella moellendorffii HOM05D004753 ORTHO05D005920 2.0e-12 75.9 53 62.3
Phvul.011G029700 Phaseolus vulgaris HOM05D004753 ORTHO05D005920 2.6e-12 75.5 53 67.9
Glyma.11G100700 Glycine max HOM05D004753 ORTHO05D005920 3.5e-12 75.1 53 67.9
Glyma.12G026700 Glycine max HOM05D004753 ORTHO05D005920 3.5e-12 75.1 53 67.9
arahy.Tifrunner.gnm1.ann1.89EUFG Arachis hypogaea HOM05D004753 ORTHO05D005920 4.5e-12 74.7 53 69.8
arahy.Tifrunner.gnm1.ann1.B7L3V1 Arachis hypogaea HOM05D004753 ORTHO05D005920 4.5e-12 74.7 53 69.8
CBR_g227 Chara braunii HOM05D004753 ORTHO05D005920 4.5e-12 74.7 80 40.0
Psat7g177400 Pisum sativum HOM05D004753 ORTHO05D005920 4.5e-12 74.7 53 67.9
Pp3c2_30030 Physcomitrium patens HOM05D004753 ORTHO05D005920 1.3e-11 73.2 53 60.4
AagrBONN_evm.TU.Sc2ySwM_362.2675 Anthoceros agrestis HOM05D004753 ORTHO05D005920 1.7e-11 72.8 80 42.5
VMungo1127G1640 Vigna mungo HOM05D004753 ORTHO05D005920 2.2e-11 72.4 53 66.0
AUR62033152 Chenopodium quinoa HOM05D004753 ORTHO05D005920 4.2e-10 68.2 48 62.5
FAN15G2487 Fragaria x ananassa HOM05D004753 ORTHO05D005920 5.5e-10 67.8 58 56.9
FvH4_2g25700 Fragaria vesca HOM05D004753 ORTHO05D005920 2.7e-09 65.5 58 55.2
FAN24G0086 Fragaria x ananassa HOM05D004753 ORTHO05D005920 2.7e-09 65.5 58 55.2
FAN27G0535 Fragaria x ananassa HOM05D004753 ORTHO05D005920 2.7e-09 65.5 58 55.2
RcHm_v2.0_Chr6g0293981 Rosa chinensis HOM05D004753 ORTHO05D005920 8.0e-09 63.9 60 51.7
FAN20G2170 Fragaria x ananassa HOM05D004753 ORTHO05D005920 1.4e-08 63.2 58 53.4
Actinidia32213 Actinidia chinensis HOM05D004753 ORTHO05D005920 2.3e-08 62.4 34 85.3
PRCOL_00006477 Prasinoderma coloniale HOM05D004753 ORTHO05D005920 2.3e-08 62.4 91 38.5
Actinidia01484 Actinidia chinensis HOM05D004753 ORTHO05D005920 4.0e-08 61.6 32 90.6
MCO08G191 Micromonas commoda HOM05D004753 ORTHO05D005920 8.8e-08 60.5 50 56.0
Gorai.004G103000 Gossypium raimondii HOM05D002536 ORTHO05D006290 7.5e-07 57.4 82 41.5
Gohir.D11G077800 Gossypium hirsutum HOM05D004753 ORTHO05D005920 1.3e-06 56.6 88 36.4
Cre10.g450879 Chlamydomonas reinhardtii HOM05D004753 ORTHO05D005920 3.7e-06 55.1 80 41.2


User provided reference genes

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