Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400004280 Solanum tuberosum HOM05D002496 ORTHO05D002787 1.6e-288 995.3 476 100.0
Solyc12g100360.1 Solanum lycopersicum HOM05D002496 ORTHO05D002787 3.8e-287 990.7 476 99.4
Sopen12g035030 Solanum pennellii HOM05D002496 ORTHO05D002787 5.0e-287 990.3 476 99.6
Nitab4.5_0000827g0130 Nicotiana tabacum HOM05D002496 ORTHO05D002787 3.1e-281 971.1 476 97.5
Peaxi162Scf00738g00312 Petunia axillaris HOM05D002496 ORTHO05D002787 1.1e-278 962.6 472 97.2
Dinv13473 Davidia involucrata HOM05D002496 ORTHO05D002787 2.7e-272 941.4 476 93.1
Prupe.6G003300 Prunus persica HOM05D002496 ORTHO05D002787 5.0e-271 937.2 476 92.0
Potri.003G221100 Populus trichocarpa HOM05D002496 ORTHO05D002787 1.9e-270 935.3 476 92.0
DCAR_029934 Daucus carota HOM05D002496 ORTHO05D002787 3.3e-270 934.5 476 92.4
Lj2A763G36 Lonicera japonica HOM05D002496 ORTHO05D002787 4.2e-270 934.1 476 92.2
MD11G1003500 Malus domestica HOM05D002496 ORTHO05D002787 4.2e-270 934.1 476 92.2
CSS0046180 Camellia sinensis var. sinensis HOM05D002496 ORTHO05D002787 7.2e-270 933.3 476 91.8
TAR369G0007 Trochodendron aralioides HOM05D002496 ORTHO05D002787 7.2e-270 933.3 476 91.8
SGA_v2.0_scaffold3G01729 Striga asiatica HOM05D002496 ORTHO05D002787 9.5e-270 932.9 476 92.0
GSVIVG01025470001 Vitis vinifera HOM05D002496 ORTHO05D002787 9.5e-270 932.9 476 91.4
Nn7g35861 Nelumbo nucifera HOM05D002496 ORTHO05D002787 1.2e-269 932.6 476 91.4
SalBow2G0058 Salvia bowleyana HOM05D002496 ORTHO05D002787 1.6e-269 932.2 476 92.2
Potri.001G003900 Populus trichocarpa HOM05D002496 ORTHO05D002787 2.1e-269 931.8 476 91.6
FvH4_3g45741 Fragaria vesca HOM05D002496 ORTHO05D002787 2.8e-269 931.4 475 91.8
FAN25G0679 Fragaria x ananassa HOM05D002496 ORTHO05D002787 2.8e-269 931.4 476 91.8
RcHm_v2.0_Chr5g0083811 Rosa chinensis HOM05D002496 ORTHO05D002787 2.8e-269 931.4 476 91.8
HanXRQChr02g0057261 Helianthus annuus HOM05D002496 ORTHO05D002787 3.6e-269 931.0 476 92.2
MD03G1003600 Malus domestica HOM05D002496 ORTHO05D002787 1.4e-268 929.1 476 91.4
Migut.D02566 Erythranthe guttata HOM05D002496 ORTHO05D002787 3.0e-268 927.9 476 91.4
Migut.D02589 Erythranthe guttata HOM05D002496 ORTHO05D002787 3.0e-268 927.9 476 91.4
Eucgr.J01766 Eucalyptus grandis HOM05D002496 ORTHO05D002787 3.0e-268 927.9 476 91.4
HanXRQChr13g0405751 Helianthus annuus HOM05D002496 ORTHO05D002787 3.0e-268 927.9 476 91.6
PGR119G1355 Punica granatum HOM05D002496 ORTHO05D002787 4.0e-268 927.5 476 91.4
vmacro12599 Vaccinium macrocarpon HOM05D002496 ORTHO05D002787 6.8e-268 926.8 476 91.2
Thecc.09G199700 Theobroma cacao HOM05D002496 ORTHO05D002787 8.9e-268 926.4 476 91.6
MSTRG.20937 Avicennia marina HOM05D002496 ORTHO05D002787 1.2e-267 926.0 476 91.6
TAR623G0218 Trochodendron aralioides HOM05D002496 ORTHO05D002787 1.5e-267 925.6 476 91.0
Rhsim01G0184300 Rhododendron simsii HOM05D002496 ORTHO05D002787 2.0e-267 925.2 476 90.5
Sabra01G0002600 Salix brachista HOM05D002496 ORTHO05D002787 2.0e-267 925.2 478 91.0
Cpa.g.sc119.40 Carica papaya HOM05D002496 ORTHO05D002787 2.6e-267 924.9 476 91.2
Cfa009562 Carpinus fangiana HOM05D002496 ORTHO05D002787 2.6e-267 924.9 476 91.6
CiPaw.13G177100 Carya illinoinensis HOM05D002496 ORTHO05D002787 2.6e-267 924.9 476 91.0
FAN16G0954 Fragaria x ananassa HOM05D002496 ORTHO05D002787 2.6e-267 924.9 476 91.2
Hma1.2p1_0241F.1_g100580 Hydrangea macrophylla HOM05D002496 ORTHO05D002787 2.6e-267 924.9 476 91.4
Manes.03G087600 Manihot esculenta HOM05D002496 ORTHO05D002787 5.7e-267 923.7 476 91.6
Haze_22941 Corylus avellana HOM05D002496 ORTHO05D002787 7.5e-267 923.3 476 91.4
MELO3C015577.2 Cucumis melo HOM05D002496 ORTHO05D002787 9.8e-267 922.9 476 90.3
QL01p003675 Quercus lobata HOM05D002496 ORTHO05D002787 9.8e-267 922.9 463 93.3
CsaV3_1G041650 Cucumis sativus L. HOM05D002496 ORTHO05D002787 2.9e-266 921.4 476 90.1
Gohir.A03G022300 Gossypium hirsutum HOM05D002496 ORTHO05D002787 2.9e-266 921.4 476 91.6
CANSAT11G2110 Cannabis sativa HOM05D002496 ORTHO05D002787 3.7e-266 921.0 476 90.3
Actinidia39346 Actinidia chinensis HOM05D002496 ORTHO05D002787 4.9e-266 920.6 476 91.0
MBI01_g25638_MAGBIO Magnolia biondii HOM05D002496 ORTHO05D002787 8.3e-266 919.8 476 91.4
ClCG03G014540 Citrullus lanatus HOM05D002496 ORTHO05D002787 1.1e-265 919.5 476 90.1
Duzib168G0200 Durio zibethinus HOM05D002496 ORTHO05D002787 1.8e-265 918.7 476 91.4
Oeu023952.2 Olea europaea HOM05D002496 ORTHO05D002787 5.4e-265 917.1 476 91.4
Cc01_g00070 Coffea canephora HOM05D002496 ORTHO05D002787 2.7e-264 914.8 476 91.8
Gorai.003G153800 Gossypium raimondii HOM05D002496 ORTHO05D002787 4.6e-264 914.1 476 91.0
Sed0000966 Sechium edule HOM05D002496 ORTHO05D002787 4.6e-264 914.1 476 90.3
CAN.G2376.2 Capsicum annuum HOM05D002496 ORTHO05D002787 5.9e-264 913.7 457 95.2
Sabra03G0164600 Salix brachista HOM05D002496 ORTHO05D002787 1.7e-263 912.1 525 83.6
Ciclev10014012m.g Citrus clementina HOM05D002496 ORTHO05D002787 5.0e-263 910.6 476 90.3
Sed0022657 Sechium edule HOM05D002496 ORTHO05D002787 5.0e-263 910.6 476 89.5
Oeu023700.1 Olea europaea HOM05D002496 ORTHO05D002787 6.6e-263 910.2 476 90.8
THA.LOC104822681 Tarenaya hassleriana HOM05D002496 ORTHO05D002787 1.1e-262 909.4 476 89.5
THA.LOC104810325 Tarenaya hassleriana HOM05D002496 ORTHO05D002787 1.6e-261 905.6 476 89.5
AL1G63400 Arabidopsis lyrata HOM05D002496 ORTHO05D002787 2.8e-261 904.8 476 89.5
Lj4g0028195 Lotus japonicus HOM05D002496 ORTHO05D002787 3.6e-261 904.4 476 88.9
CAN.G2119.1 Capsicum annuum HOM05D002496 ORTHO05D002787 1.0e-260 902.9 478 92.3
Sc16g0012220 Simmondsia chinensis HOM05D002496 ORTHO05D002787 1.0e-260 902.9 476 89.1
AT1G55350 Arabidopsis thaliana HOM05D002496 ORTHO05D002787 1.4e-260 902.5 476 89.5
PSO384G1583 Papaver somniferum HOM05D002496 ORTHO05D002787 2.3e-260 901.7 476 88.7
Hund21627 Selenicereus undatus HOM05D002496 ORTHO05D002787 2.3e-260 901.7 475 89.5
Ca_17842_v3 Cicer arietinum L. HOM05D002496 ORTHO05D002787 4.0e-260 901.0 476 88.2
Ca_17843_v3 Cicer arietinum L. HOM05D002496 ORTHO05D002787 4.0e-260 901.0 476 88.2
Sp1g41030 Schrenkiella parvula HOM05D002496 ORTHO05D002787 4.0e-260 901.0 476 89.3
ATR0827G153 Amborella trichopoda HOM05D002496 ORTHO05D002787 5.2e-260 900.6 476 89.1
VMungo0251G1507 Vigna mungo HOM05D002496 ORTHO05D002787 5.2e-260 900.6 476 88.0
arahy.Tifrunner.gnm1.ann1.3G7H7K Arachis hypogaea HOM05D002496 ORTHO05D002787 6.8e-260 900.2 476 88.0
Carub.0001s4386 Capsella rubella HOM05D002496 ORTHO05D002787 6.8e-260 900.2 476 89.1
AUR62040903 Chenopodium quinoa HOM05D002496 ORTHO05D002787 8.9e-260 899.8 476 89.3
Lalb_Chr13g0295581 Lupinus albus HOM05D002496 ORTHO05D002787 1.2e-259 899.4 476 87.8
arahy.Tifrunner.gnm1.ann1.P751E4 Arachis hypogaea HOM05D002496 ORTHO05D002787 1.5e-259 899.0 476 87.8
BcaC08g43618 Brassica carinata HOM05D002496 ORTHO05D002787 1.5e-259 899.0 476 88.9
unitig_899.g15353 Utricularia gibba HOM05D002496 ORTHO05D002787 2.0e-259 898.7 474 88.8
Aqoxy1G00475 Aquilegia oxysepala HOM05D002496 ORTHO05D002787 3.4e-259 897.9 476 88.0
PSO339G0705 Papaver somniferum HOM05D002496 ORTHO05D002787 3.4e-259 897.9 476 88.4
A06p00230 Brassica napus HOM05D002496 ORTHO05D002787 4.4e-259 897.5 476 88.7
C06p10330 Brassica napus HOM05D002496 ORTHO05D002787 4.4e-259 897.5 476 88.7
BraA06t23239Z Brassica rapa HOM05D002496 ORTHO05D002787 4.4e-259 897.5 476 88.7
TPR.G6803 Trifolium pratense HOM05D002496 ORTHO05D002787 4.4e-259 897.5 476 88.4
Glyma.08G125500 Glycine max HOM05D002496 ORTHO05D002787 5.8e-259 897.1 476 87.6
BolC6t36109H Brassica oleracea HOM05D002496 ORTHO05D002787 9.8e-259 896.3 476 88.4
Medtr8g088520 Medicago truncatula HOM05D002496 ORTHO05D002787 9.8e-259 896.3 476 87.8
Thhalv10011175m.g Eutrema salsugineum HOM05D002496 ORTHO05D002787 1.3e-258 896.0 476 88.4
EL10Ac4g10386 Beta vulgaris HOM05D002496 ORTHO05D002787 2.2e-258 895.2 476 88.4
HPP92_024699 Vanilla planifolia HOM05D002496 ORTHO05D002787 4.9e-258 894.0 476 87.0
BcaB04g16962 Brassica carinata HOM05D002496 ORTHO05D002787 1.9e-257 892.1 476 87.6
Glyma.05G167200 Glycine max HOM05D002496 ORTHO05D002787 2.4e-257 891.7 476 87.4
Phvul.002G247600 Phaseolus vulgaris HOM05D002496 ORTHO05D002787 2.4e-257 891.7 476 87.4
Psat7g063600 Pisum sativum HOM05D002496 ORTHO05D002787 2.4e-257 891.7 476 87.6
CARHR045010 Cardamine hirsuta HOM05D002496 ORTHO05D002787 4.6e-256 887.5 476 88.0
Os02g0709400 Oryza sativa ssp. japonica HOM05D002496 ORTHO05D002787 5.6e-254 880.6 476 87.4
Zm00001eb014030 Zea mays HOM05D002496 ORTHO05D002787 1.4e-252 875.9 476 86.3
Aa31LG10G1150 Aethionema arabicum HOM05D002496 ORTHO05D002787 3.1e-252 874.8 476 87.2
ECA233G0145 Erigeron canadensis HOM05D002496 ORTHO05D002787 3.5e-248 861.3 446 90.4
Lsat_1_v5_gn_6_53141 Lactuca sativa HOM05D002496 ORTHO05D002787 1.9e-246 855.5 436 92.0
AUR62019163 Chenopodium quinoa HOM05D002496 ORTHO05D002787 6.8e-244 847.0 476 85.5
SEGI_26512 Sequoiadendron giganteum HOM05D002496 ORTHO05D002787 3.1e-236 821.6 477 81.6
Mapoly0026s0090 Marchantia polymorpha HOM05D002496 ORTHO05D002787 4.3e-230 801.2 477 78.6
Pp3c17_17550 Physcomitrium patens HOM05D002496 ORTHO05D002787 9.6e-230 800.0 477 78.2
SMO332G0020 Selaginella moellendorffii HOM05D002496 ORTHO05D002787 2.1e-229 798.9 477 79.0
SMO334G0130 Selaginella moellendorffii HOM05D002496 ORTHO05D002787 2.1e-229 798.9 477 79.0
AagrBONN_evm.TU.Sc2ySwM_344.939 Anthoceros agrestis HOM05D002496 ORTHO05D002787 9.0e-228 793.5 477 77.4
CDE02G1358 Ceratophyllum demersum HOM05D002496 ORTHO05D002787 9.9e-227 790.0 414 88.6
COL.COLO4_05794 Corchorus olitorius HOM05D002496 ORTHO05D002787 2.2e-226 788.9 442 85.1
Mapoly0026s0110 Marchantia polymorpha HOM05D002496 ORTHO05D002787 3.0e-223 778.5 477 75.5
CAN.G1751.13 Capsicum annuum HOM05D002496 ORTHO05D002787 8.7e-215 750.4 398 91.2
CAN.G486.3 Capsicum annuum HOM05D002496 ORTHO05D002787 3.4e-195 685.3 336 96.1
FvH4_3g45670 Fragaria vesca HOM05D002496 ORTHO05D002787 2.6e-179 632.5 325 91.4
CBR_g23680 Chara braunii HOM05D002496 ORTHO05D002787 2.7e-176 622.5 456 62.9
Gohir.D03G146400 Gossypium hirsutum HOM05D002496 ORTHO05D002787 7.0e-172 607.8 319 90.3
CAN.G1669.10 Capsicum annuum HOM05D002496 ORTHO05D002787 5.5e-169 598.2 322 89.1
CAN.G1783.6 Capsicum annuum HOM05D002496 ORTHO05D002787 1.2e-166 590.5 296 95.6
Atru.chr3.2106 Acer truncatum HOM05D002496 ORTHO05D002787 3.0e-159 565.8 295 91.2
FvH4_3g45640 Fragaria vesca HOM05D002496 ORTHO05D002787 4.1e-156 555.4 296 88.2
FAN11G2291 Fragaria x ananassa HOM05D002496 ORTHO05D002787 8.3e-133 478.0 321 73.5
FAN11G3798 Fragaria x ananassa HOM05D002496 ORTHO05D002787 5.6e-129 465.3 225 93.8
FAN25G1480 Fragaria x ananassa HOM05D002496 ORTHO05D002787 5.2e-119 432.2 224 88.8
Dinv11477 Davidia involucrata HOM05D002496 ORTHO05D002787 1.3e-114 417.5 476 49.2
CiPaw.14G136900 Carya illinoinensis HOM05D002496 ORTHO05D002787 7.1e-100 368.6 189 87.3
CAN.G1783.5 Capsicum annuum HOM05D002496 ORTHO05D002787 6.9e-95 352.1 174 95.4
CAN.G1669.5 Capsicum annuum HOM05D002496 ORTHO05D002787 3.4e-86 323.2 372 51.9
CAN.G2026.4 Capsicum annuum HOM05D002496 ORTHO05D002787 2.1e-59 234.2 122 91.8
Manes.15G109101 Manihot esculenta HOM05D002496 ORTHO05D000252 1.7e-53 214.5 119 88.2
CBR_g39746 Chara braunii HOM05D002496 ORTHO05D002787 2.2e-53 214.2 494 32.6
CAN.G1703.6 Capsicum annuum HOM05D002496 ORTHO05D002787 8.5e-53 212.2 147 73.5
FAN04G0904 Fragaria x ananassa HOM05D002496 ORTHO05D002787 1.8e-50 204.5 102 92.2
CBR_g37133 Chara braunii HOM05D002496 ORTHO05D002787 1.2e-49 201.8 261 41.0
Cre02.g112250 Chlamydomonas reinhardtii HOM05D002496 ORTHO05D002787 1.4e-47 194.9 331 35.3
Cre10.g448850 Chlamydomonas reinhardtii HOM05D002496 ORTHO05D002787 3.8e-45 186.8 540 29.4
Cre02.g112300 Chlamydomonas reinhardtii HOM05D002496 ORTHO05D002787 1.4e-42 178.3 355 34.6
HPP92_024697 Vanilla planifolia HOM05D002496 ORTHO05D002787 5.2e-42 176.4 279 41.2
CBR_g23253 Chara braunii HOM05D002496 ORTHO05D002787 7.5e-41 172.6 271 40.6
MCO05G112 Micromonas commoda HOM05D002496 ORTHO05D002787 6.3e-40 169.5 323 33.1
FvH4_3g45710 Fragaria vesca HOM05D002496 ORTHO05D002787 5.0e-37 159.8 97 76.3
MCO07G349 Micromonas commoda HOM05D002496 ORTHO05D002787 5.6e-36 156.4 303 33.0
FAN21G2381 Fragaria x ananassa HOM05D002496 ORTHO05D002787 8.9e-34 149.1 101 69.3
CBR_g38074 Chara braunii HOM05D007859 ORTHO05D002787 7.8e-30 136.0 234 37.2
Cre05.g241202 Chlamydomonas reinhardtii HOM05D002496 ORTHO05D002787 2.3e-29 134.4 370 30.0
CBR_g38075 Chara braunii HOM05D000019 ORTHO05D002787 5.0e-29 133.3 248 35.1
Cre17.g728300 Chlamydomonas reinhardtii HOM05D002496 ORTHO05D002787 5.0e-29 133.3 358 29.3
PRCOL_00006516 Prasinoderma coloniale HOM05D002496 ORTHO05D002787 8.9e-26 122.5 187 36.9
FAN04G0011 Fragaria x ananassa HOM05D002496 ORTHO05D002787 2.6e-25 120.9 81 70.4
MCO11G888 Micromonas commoda HOM05D002496 ORTHO05D002787 3.2e-23 114.0 314 28.7
Actinidia30436 Actinidia chinensis HOM05D002496 ORTHO05D002787 9.5e-20 102.4 171 40.9
MCO09G147 Micromonas commoda HOM05D002496 ORTHO05D002787 8.1e-19 99.4 306 28.1
MCO16G075 Micromonas commoda HOM05D002496 ORTHO05D002787 4.1e-15 87.0 159 35.2
CAN.G337.40 Capsicum annuum HOM05D002496 ORTHO05D002787 2.1e-11 74.7 38 92.1
C03p92650 Brassica napus HOM05D002496 ORTHO05D002787 6.2e-11 73.2 33 87.9
Haze_13303 Corylus avellana HOM05D000007 ORTHO05D000039 2.4e-10 71.2 44 79.5
CDE02G0627 Ceratophyllum demersum HOM05D002496 ORTHO05D002787 6.8e-10 69.7 44 72.7
CBR_g38072 Chara braunii HOM05D002496 ORTHO05D134925 6.0e-06 56.6 76 39.5


User provided reference genes

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