Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400004034 Solanum tuberosum HOM05D000103 ORTHO05D395403 6.6e-41 170.2 85 100.0
Peaxi162Scf00223g01514 Petunia axillaris HOM05D000103 ORTHO05D000049 1.6e-10 69.3 48 72.9
Nitab4.5_0002921g0010 Nicotiana tabacum HOM05D000103 ORTHO05D000049 3.6e-10 68.2 48 70.8
Solyc05g018510.3 Solanum lycopersicum HOM05D000103 ORTHO05D000049 3.6e-10 68.2 48 72.9
Sopen05g015600 Solanum pennellii HOM05D000103 ORTHO05D000049 3.6e-10 68.2 48 72.9
Nitab4.5_0000186g0070 Nicotiana tabacum HOM05D000103 ORTHO05D000049 7.9e-10 67.0 48 70.8
Oeu058077.1 Olea europaea HOM05D000103 ORTHO05D000049 1.5e-08 62.8 50 60.0
SGA_v2.0_scaffold12G06127 Striga asiatica HOM05D000103 ORTHO05D000049 1.9e-08 62.4 37 75.7
SalBow1G8181 Salvia bowleyana HOM05D000103 ORTHO05D000049 2.5e-08 62.0 48 62.5
unitig_736.g22279 Utricularia gibba HOM05D000103 ORTHO05D000049 2.5e-08 62.0 48 64.6
MSTRG.10627 Avicennia marina HOM05D000103 ORTHO05D000049 3.3e-08 61.6 50 62.0
COL.COLO4_34950 Corchorus olitorius HOM05D000103 ORTHO05D000049 4.3e-08 61.2 50 58.0
Oeu035416.2 Olea europaea HOM05D000103 ORTHO05D000049 5.7e-08 60.8 50 58.0
PGSC0003DMG400014708 Solanum tuberosum HOM05D000319 ORTHO05D000903 5.7e-08 60.8 40 77.5
Thecc.09G117200 Theobroma cacao HOM05D000103 ORTHO05D000049 5.7e-08 60.8 50 60.0
TWI63G0475 Tripterygium wilfordii HOM05D000103 ORTHO05D000049 9.7e-08 60.1 48 62.5
CSS0003343 Camellia sinensis var. sinensis HOM05D000103 ORTHO05D000049 1.3e-07 59.7 48 62.5
ClCG11G002680 Citrullus lanatus HOM05D000103 ORTHO05D000049 1.3e-07 59.7 50 58.0
Gohir.A05G020925 Gossypium hirsutum HOM05D000103 ORTHO05D000049 1.7e-07 59.3 50 58.0
Gohir.D05G022100 Gossypium hirsutum HOM05D000103 ORTHO05D000049 1.7e-07 59.3 50 58.0
Gorai.009G022400 Gossypium raimondii HOM05D000103 ORTHO05D000049 1.7e-07 59.3 50 58.0
HanXRQChr10g0317581 Helianthus annuus HOM05D000103 ORTHO05D000049 1.7e-07 59.3 48 60.4
AT2G26910 Arabidopsis thaliana HOM05D000103 ORTHO05D000049 2.2e-07 58.9 50 60.0
Duzib168G0947 Durio zibethinus HOM05D000103 ORTHO05D000049 2.2e-07 58.9 50 56.0
QL02p086453 Quercus lobata HOM05D000103 ORTHO05D000049 2.2e-07 58.9 48 58.3
Cpa.g.sc23.164 Carica papaya HOM05D000103 ORTHO05D000049 2.8e-07 58.5 48 60.4
Sed0007132 Sechium edule HOM05D000103 ORTHO05D000049 2.8e-07 58.5 50 58.0
Sopen06g003000 Solanum pennellii HOM05D000200 ORTHO05D000262 2.8e-07 58.5 40 75.0
arahy.Tifrunner.gnm1.ann1.BJPQ64 Arachis hypogaea HOM05D000103 ORTHO05D000049 3.7e-07 58.2 51 52.9
arahy.Tifrunner.gnm1.ann1.TA57MB Arachis hypogaea HOM05D000103 ORTHO05D000049 3.7e-07 58.2 50 54.0
Atru.chr7.1277 Acer truncatum HOM05D000103 ORTHO05D000049 4.8e-07 57.8 50 54.0
Aqoxy7G01892 Aquilegia oxysepala HOM05D000103 ORTHO05D000049 4.8e-07 57.8 48 58.3
BcaB01g03034 Brassica carinata HOM05D000103 ORTHO05D000049 4.8e-07 57.8 50 58.0
CAN.G199.55 Capsicum annuum HOM05D000103 ORTHO05D000049 4.8e-07 57.8 51 56.9
Cfa003302 Carpinus fangiana HOM05D000103 ORTHO05D000049 4.8e-07 57.8 37 70.3
Haze_25666 Corylus avellana HOM05D000103 ORTHO05D000049 4.8e-07 57.8 37 70.3
MELO3C004538.2 Cucumis melo HOM05D000103 ORTHO05D000049 4.8e-07 57.8 50 56.0
CsaV3_2G002520 Cucumis sativus L. HOM05D000103 ORTHO05D000049 4.8e-07 57.8 50 56.0
ECA234G4572 Erigeron canadensis HOM05D000103 ORTHO05D000049 4.8e-07 57.8 48 58.3
FvH4_1g04210 Fragaria vesca HOM05D000103 ORTHO05D000049 4.8e-07 57.8 48 58.3
FAN19G2343 Fragaria x ananassa HOM05D000103 ORTHO05D000049 4.8e-07 57.8 48 58.3
FAN23G2487 Fragaria x ananassa HOM05D000103 ORTHO05D000049 4.8e-07 57.8 48 58.3
FAN26G1157 Fragaria x ananassa HOM05D000103 ORTHO05D000049 4.8e-07 57.8 48 58.3
RcHm_v2.0_Chr2g0089741 Rosa chinensis HOM05D000103 ORTHO05D000049 4.8e-07 57.8 48 58.3
CANSAT56G0097 Cannabis sativa HOM05D000103 ORTHO05D000049 6.3e-07 57.4 48 56.2
Lj7A639G47 Lonicera japonica HOM05D000103 ORTHO05D000049 6.3e-07 57.4 48 58.3
Lalb_Chr13g0302241 Lupinus albus HOM05D000103 ORTHO05D000049 6.3e-07 57.4 58 53.4
MBI04_g39531_MAGBIO Magnolia biondii HOM05D000103 ORTHO05D000049 6.3e-07 57.4 50 56.0
arahy.Tifrunner.gnm1.ann1.HQ5YUL Arachis hypogaea HOM05D000103 ORTHO05D000049 8.2e-07 57.0 51 52.9
Manes.16G064000 Manihot esculenta HOM05D000103 ORTHO05D000049 8.2e-07 57.0 48 60.4
Nn8g39304 Nelumbo nucifera HOM05D000103 ORTHO05D000049 8.2e-07 57.0 37 64.9
Sp4g08450 Schrenkiella parvula HOM05D000103 ORTHO05D000049 8.2e-07 57.0 50 56.0
Lsat_1_v5_gn_5_99201 Lactuca sativa HOM05D000103 ORTHO05D000049 1.1e-06 56.6 33 78.8
Potri.018G074500 Populus trichocarpa HOM05D000103 ORTHO05D000049 1.1e-06 56.6 50 54.0
Hund09170 Selenicereus undatus HOM05D000103 ORTHO05D000049 1.1e-06 56.6 48 54.2
Sopen06g002900 Solanum pennellii HOM05D000200 ORTHO05D000262 1.1e-06 56.6 39 74.4
THA.LOC104809017 Tarenaya hassleriana HOM05D000103 ORTHO05D000049 1.1e-06 56.6 48 58.3
unitig_748.g7152 Utricularia gibba HOM05D000103 ORTHO05D000049 1.1e-06 56.6 48 60.4
BcaB06g28106 Brassica carinata HOM05D000103 ORTHO05D000049 1.4e-06 56.2 50 56.0
A04p20490 Brassica napus HOM05D000103 ORTHO05D000049 1.4e-06 56.2 50 56.0
C04p56260 Brassica napus HOM05D000103 ORTHO05D000049 1.4e-06 56.2 50 56.0
BolC4t27153H Brassica oleracea HOM05D000103 ORTHO05D000049 1.4e-06 56.2 50 56.0
BraA04t17625Z Brassica rapa HOM05D000103 ORTHO05D000049 1.4e-06 56.2 50 56.0
Thhalv10001880m.g Eutrema salsugineum HOM05D000103 ORTHO05D000049 1.4e-06 56.2 50 56.0
ATR0083G022 Amborella trichopoda HOM05D000103 ORTHO05D000049 1.8e-06 55.8 48 60.4
AL4G20150 Arabidopsis lyrata HOM05D000103 ORTHO05D000049 1.8e-06 55.8 50 56.0
MSTRG.25870 Avicennia marina HOM05D000103 ORTHO05D000049 1.8e-06 55.8 50 54.0
CARHR119070 Cardamine hirsuta HOM05D000103 ORTHO05D000049 1.8e-06 55.8 50 56.0
AUR62011042 Chenopodium quinoa HOM05D000103 ORTHO05D000049 1.8e-06 55.8 48 56.2
AUR62033418 Chenopodium quinoa HOM05D000103 ORTHO05D000049 1.8e-06 55.8 48 56.2
Ca_21723_v3 Cicer arietinum L. HOM05D000103 ORTHO05D000049 1.8e-06 55.8 48 54.2
Lj4g0018685 Lotus japonicus HOM05D000103 ORTHO05D000049 1.8e-06 55.8 48 54.2
Carub.0004s0741 Capsella rubella HOM05D000103 ORTHO05D000049 2.4e-06 55.5 37 67.6
Nitab4.5_0005696g0020 Nicotiana tabacum HOM05D000319 ORTHO05D000903 2.4e-06 55.5 39 71.8
TPR.G26796 Trifolium pratense HOM05D000103 ORTHO05D000049 2.4e-06 55.5 48 54.2
Aa31LG5G8870 Aethionema arabicum HOM05D000103 ORTHO05D000049 3.1e-06 55.1 50 54.0
DCAR_010401 Daucus carota HOM05D000103 ORTHO05D000049 3.1e-06 55.1 37 64.9
Dinv11585 Davidia involucrata HOM05D000103 ORTHO05D000049 3.1e-06 55.1 48 58.3
Glyma.05G011900 Glycine max HOM05D000103 ORTHO05D000049 3.1e-06 55.1 48 54.2
Medtr4g113070 Medicago truncatula HOM05D000103 ORTHO05D000049 3.1e-06 55.1 50 50.0
Nitab4.5_0001447g0060 Nicotiana tabacum HOM05D000319 ORTHO05D000903 3.1e-06 55.1 39 71.8
Nitab4.5_0001697g0110 Nicotiana tabacum HOM05D000319 ORTHO05D000903 3.1e-06 55.1 39 71.8
Sabra18G0063500 Salix brachista HOM05D000103 ORTHO05D000049 3.1e-06 55.1 48 56.2
PGSC0003DMG400011384 Solanum tuberosum HOM05D000319 ORTHO05D000903 3.1e-06 55.1 39 71.8
PGSC0003DMG400026131 Solanum tuberosum HOM05D000103 ORTHO05D000049 3.1e-06 55.1 48 58.3
TAR625G1213 Trochodendron aralioides HOM05D000103 ORTHO05D000049 3.1e-06 55.1 37 64.9
EL10Ac8g18560 Beta vulgaris HOM05D000103 ORTHO05D000049 4.1e-06 54.7 47 57.4
CiPaw.03G236500 Carya illinoinensis HOM05D000103 ORTHO05D000049 4.1e-06 54.7 48 58.3
Glyma.17G120100 Glycine max HOM05D000103 ORTHO05D000049 4.1e-06 54.7 48 54.2
Nitab4.5_0005873g0020 Nicotiana tabacum HOM05D000103 ORTHO05D000049 4.1e-06 54.7 49 57.1
Os01g0177900 Oryza sativa ssp. japonica HOM05D000103 ORTHO05D000049 4.1e-06 54.7 49 53.1
SalBow4G1055 Salvia bowleyana HOM05D000103 ORTHO05D000049 4.1e-06 54.7 49 57.1
PSO063G1552 Papaver somniferum HOM05D000103 ORTHO05D000049 5.3e-06 54.3 48 56.2
Peaxi162Scf00572g00216 Petunia axillaris HOM05D000319 ORTHO05D000903 5.3e-06 54.3 39 69.2
Peaxi162Scf01039g00023 Petunia axillaris HOM05D000319 ORTHO05D000903 5.3e-06 54.3 39 69.2
Duzib235G0653 Durio zibethinus HOM05D000103 ORTHO05D000049 6.9e-06 53.9 50 52.0
Gohir.A06G059600 Gossypium hirsutum HOM05D000103 ORTHO05D000049 6.9e-06 53.9 50 52.0
Gohir.D06G057800 Gossypium hirsutum HOM05D000103 ORTHO05D000049 6.9e-06 53.9 50 52.0
Gorai.010G067900 Gossypium raimondii HOM05D000103 ORTHO05D000049 6.9e-06 53.9 50 52.0
Nitab4.5_0004183g0020 Nicotiana tabacum HOM05D000319 ORTHO05D000903 6.9e-06 53.9 39 69.2
Nitab4.5_0010882g0020 Nicotiana tabacum HOM05D000319 ORTHO05D000903 6.9e-06 53.9 39 69.2
Sc09g0008790 Simmondsia chinensis HOM05D000103 ORTHO05D000049 6.9e-06 53.9 50 52.0
VMungo1215G3272 Vigna mungo HOM05D000103 ORTHO05D000049 6.9e-06 53.9 48 52.1
Actinidia07447 Actinidia chinensis HOM05D000103 ORTHO05D000049 9.1e-06 53.5 36 63.9
Ah.09g227420 Amaranthus hybridus HOM05D000103 ORTHO05D000049 9.1e-06 53.5 48 54.2
Cc06_g09210 Coffea canephora HOM05D000103 ORTHO05D000049 9.1e-06 53.5 48 56.2
Nitab4.5_0003256g0030 Nicotiana tabacum HOM05D000319 ORTHO05D000903 9.1e-06 53.5 42 64.3
Oeu032729.1 Olea europaea HOM05D000103 ORTHO05D000049 9.1e-06 53.5 55 52.7
Psat0s944g0080 Pisum sativum HOM05D000103 ORTHO05D000049 9.1e-06 53.5 48 52.1
SEGI_10523 Sequoiadendron giganteum HOM05D000103 ORTHO05D000049 9.1e-06 53.5 34 64.7
Solyc09g074680.3 Solanum lycopersicum HOM05D000319 ORTHO05D000903 9.1e-06 53.5 39 69.2
Sopen09g029560 Solanum pennellii HOM05D000319 ORTHO05D000903 9.1e-06 53.5 39 69.2
unitig_37.g12224 Utricularia gibba HOM05D000103 ORTHO05D000049 9.1e-06 53.5 47 57.4


User provided reference genes

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