Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400003752 Solanum tuberosum HOM05D001587 ORTHO05D008791 3.0e-207 724.9 370 100.0
Sopen04g034390 Solanum pennellii HOM05D001587 ORTHO05D008791 1.1e-196 689.9 370 96.5
Solyc04g080800.4 Solanum lycopersicum HOM05D001587 ORTHO05D008791 3.3e-193 678.3 370 95.4
CAN.G851.40 Capsicum annuum HOM05D001587 ORTHO05D008791 3.6e-176 621.7 370 86.5
Peaxi162Scf00189g00920 Petunia axillaris HOM05D001587 ORTHO05D008791 4.6e-163 578.2 373 81.5
Nitab4.5_0001861g0110 Nicotiana tabacum HOM05D001587 ORTHO05D008791 3.0e-162 575.5 374 82.6
Nitab4.5_0005779g0030 Nicotiana tabacum HOM05D001587 ORTHO05D008791 2.5e-153 545.8 376 78.5
Cc10_g02390 Coffea canephora HOM05D001587 ORTHO05D008791 1.3e-128 463.8 300 78.3
MSTRG.1247 Avicennia marina HOM05D001587 ORTHO05D008791 3.7e-128 462.2 363 68.9
Migut.C00772 Erythranthe guttata HOM05D001587 ORTHO05D008791 2.4e-127 459.5 371 66.6
GSVIVG01009782001 Vitis vinifera HOM05D001587 ORTHO05D008791 2.6e-126 456.1 367 65.9
Hma1.2p1_1194F.1_g265710 Hydrangea macrophylla HOM05D001587 ORTHO05D008791 3.2e-124 449.1 330 70.0
QL02p010191 Quercus lobata HOM05D001587 ORTHO05D008791 3.2e-124 449.1 329 71.7
Duzib041G0293 Durio zibethinus HOM05D001587 ORTHO05D008791 5.5e-124 448.4 344 68.6
CSS0005575 Camellia sinensis var. sinensis HOM05D001587 ORTHO05D008791 9.4e-124 447.6 308 76.0
Thecc.08G034500 Theobroma cacao HOM05D001587 ORTHO05D008791 9.4e-124 447.6 335 71.0
CSS0021558 Camellia sinensis var. sinensis HOM05D001587 ORTHO05D008791 1.6e-123 446.8 352 69.0
AUR62034528 Chenopodium quinoa HOM05D001587 ORTHO05D008791 1.6e-123 446.8 328 70.1
Lj4A33T83 Lonicera japonica HOM05D001587 ORTHO05D008791 1.6e-123 446.8 301 73.8
COL.COLO4_26234 Corchorus olitorius HOM05D001587 ORTHO05D008791 4.7e-123 445.3 316 73.1
Potri.005G232200 Populus trichocarpa HOM05D001587 ORTHO05D008791 7.9e-123 444.5 372 64.5
Gorai.010G007600 Gossypium raimondii HOM05D001587 ORTHO05D008791 1.0e-122 444.1 318 72.6
Manes.05G154300 Manihot esculenta HOM05D001587 ORTHO05D008791 2.3e-122 443.0 369 65.3
Gohir.D06G002700 Gossypium hirsutum HOM05D001587 ORTHO05D008791 3.0e-122 442.6 318 72.6
Atru.chr13.396 Acer truncatum HOM05D001587 ORTHO05D008791 5.1e-122 441.8 309 73.1
HanXRQChr04g0099151 Helianthus annuus HOM05D001587 ORTHO05D008791 5.1e-122 441.8 361 65.9
Cpa.g.sc99.13 Carica papaya HOM05D001587 ORTHO05D008791 8.8e-122 441.0 333 68.2
Eucgr.F01602 Eucalyptus grandis HOM05D001587 ORTHO05D008791 2.6e-121 439.5 350 66.9
RcHm_v2.0_Chr6g0301771 Rosa chinensis HOM05D001587 ORTHO05D008791 4.4e-121 438.7 332 69.6
Hund17199 Selenicereus undatus HOM05D001587 ORTHO05D008791 5.7e-121 438.3 370 63.5
CANSAT35G0963 Cannabis sativa HOM05D001587 ORTHO05D008791 1.3e-120 437.2 292 74.0
Sabra05G0179100 Salix brachista HOM05D001587 ORTHO05D002654 1.3e-120 437.2 289 75.4
MD15G1021600 Malus domestica HOM05D001587 ORTHO05D008791 1.7e-120 436.8 335 67.5
Ciclev10001571m.g Citrus clementina HOM05D001587 ORTHO05D008791 2.8e-120 436.0 292 75.7
TPR.G12317 Trifolium pratense HOM05D001587 ORTHO05D008791 2.8e-120 436.0 369 64.2
Prupe.1G373400 Prunus persica HOM05D001587 ORTHO05D008791 3.7e-120 435.6 344 66.9
Sed0025916 Sechium edule HOM05D001587 ORTHO05D008791 4.8e-120 435.3 369 64.0
TWI56G0852 Tripterygium wilfordii HOM05D001587 ORTHO05D008791 4.8e-120 435.3 370 63.5
EL10Ac1g00602 Beta vulgaris HOM05D001587 ORTHO05D008791 6.3e-120 434.9 360 63.9
Lsat_1_v5_gn_1_17201 Lactuca sativa HOM05D001587 ORTHO05D008791 8.2e-120 434.5 327 70.3
Ah.05g180890 Amaranthus hybridus HOM05D001587 ORTHO05D008791 1.8e-119 433.3 293 71.7
Sc15g0007180 Simmondsia chinensis HOM05D001587 ORTHO05D008791 9.1e-119 431.0 341 66.3
FvH4_2g39240 Fragaria vesca HOM05D001587 ORTHO05D008791 1.2e-118 430.6 322 68.9
MBI11_g07616_MAGBIO Magnolia biondii HOM05D001587 ORTHO05D008791 2.0e-118 429.9 312 68.6
Lalb_Chr08g0245991 Lupinus albus HOM05D001587 ORTHO05D008791 3.5e-118 429.1 298 72.1
Lj1g0011689 Lotus japonicus HOM05D001587 ORTHO05D008791 1.0e-117 427.6 320 66.9
CsaV3_2G029060 Cucumis sativus L. HOM05D001587 ORTHO05D008791 2.9e-117 426.0 330 68.2
Glyma.06G029000 Glycine max HOM05D001587 ORTHO05D008791 2.9e-117 426.0 335 65.4
Phvul.009G060300 Phaseolus vulgaris HOM05D001587 ORTHO05D008791 3.8e-117 425.6 307 69.1
Aqoxy6G01203 Aquilegia oxysepala HOM05D001587 ORTHO05D008791 5.0e-117 425.2 362 63.0
Nn5g29720 Nelumbo nucifera HOM05D001587 ORTHO05D008791 6.5e-117 424.9 348 63.5
CDE04G1582 Ceratophyllum demersum HOM05D001587 ORTHO05D008791 8.5e-117 424.5 319 66.8
AL1G52680 Arabidopsis lyrata HOM05D001587 ORTHO05D008791 1.1e-116 424.1 292 71.9
PSO541G2666 Papaver somniferum HOM05D001587 ORTHO05D008791 1.1e-116 424.1 369 61.5
ECA247G3480 Erigeron canadensis HOM05D001587 ORTHO05D008791 1.9e-116 423.3 335 66.9
unitig_578.g16081 Utricularia gibba HOM05D001587 ORTHO05D008791 1.9e-116 423.3 293 75.1
AT1G45110 Arabidopsis thaliana HOM05D001587 ORTHO05D008791 4.2e-116 422.2 332 66.6
MELO3C010971.2 Cucumis melo HOM05D001587 ORTHO05D008791 4.2e-116 422.2 330 67.3
BcaB07g33894 Brassica carinata HOM05D001587 ORTHO05D008791 7.2e-116 421.4 306 68.6
PSO675G8960 Papaver somniferum HOM05D001587 ORTHO05D008791 7.2e-116 421.4 341 65.1
BcaC08g42893 Brassica carinata HOM05D001587 ORTHO05D008791 2.7e-115 419.5 319 67.1
C06p01170 Brassica napus HOM05D001587 ORTHO05D008791 2.7e-115 419.5 319 67.1
BolC6t35253H Brassica oleracea HOM05D001587 ORTHO05D008791 2.7e-115 419.5 319 67.1
A10p07100 Brassica napus HOM05D001587 ORTHO05D008791 3.6e-115 419.1 292 70.9
BraA10t42958Z Brassica rapa HOM05D001587 ORTHO05D008791 1.0e-114 417.5 331 65.0
Carub.0001s3551 Capsella rubella HOM05D001587 ORTHO05D008791 1.0e-114 417.5 327 65.7
THA.LOC104813319 Tarenaya hassleriana HOM05D001587 ORTHO05D008791 1.4e-114 417.2 290 72.1
Sp1g33880 Schrenkiella parvula HOM05D001587 ORTHO05D008791 2.3e-114 416.4 290 71.0
FAN27G1828 Fragaria x ananassa HOM05D001587 ORTHO05D008791 6.7e-114 414.8 342 64.6
CARHR036210 Cardamine hirsuta HOM05D001587 ORTHO05D008791 1.5e-113 413.7 333 64.3
Thhalv10011622m.g Eutrema salsugineum HOM05D001587 ORTHO05D008791 3.3e-113 412.5 343 63.0
Rhsim07G0243600 Rhododendron simsii HOM05D001587 ORTHO05D008791 3.7e-112 409.1 338 66.9
Aa31sc185G120 Aethionema arabicum HOM05D001587 ORTHO05D008791 4.8e-112 408.7 398 56.5
FAN15G0115 Fragaria x ananassa HOM05D001587 ORTHO05D008791 5.3e-111 405.2 358 61.2
Medtr3g112310 Medicago truncatula HOM05D001587 ORTHO05D008791 7.7e-110 401.4 321 65.1
Zm00001eb048090 Zea mays HOM05D001587 ORTHO05D008791 6.5e-109 398.3 336 62.2
Os10g0414500 Oryza sativa ssp. japonica HOM05D001587 ORTHO05D008791 1.2e-107 394.0 325 64.3
VMungo1309G0203 Vigna mungo HOM05D001587 ORTHO05D008791 1.2e-107 394.0 287 68.6
CiPaw.07G156300 Carya illinoinensis HOM05D001587 ORTHO05D008791 3.6e-107 392.5 265 75.1
FAN20G2929 Fragaria x ananassa HOM05D001587 ORTHO05D008791 7.5e-105 384.8 297 68.7
Gohir.A06G007600 Gossypium hirsutum HOM05D001587 ORTHO05D008791 1.7e-104 383.6 282 70.9
HPP92_024861 Vanilla planifolia HOM05D001587 ORTHO05D008791 2.8e-104 382.9 338 59.8
arahy.Tifrunner.gnm1.ann1.R2LLHR Arachis hypogaea HOM05D001587 ORTHO05D008791 9.1e-103 377.9 458 48.0
arahy.Tifrunner.gnm1.ann1.F22IQH Arachis hypogaea HOM05D001587 ORTHO05D008791 3.0e-98 362.8 527 43.5
ATR0665G135 Amborella trichopoda HOM05D001587 ORTHO05D008791 2.0e-97 360.1 265 66.8
Haze_22561 Corylus avellana HOM05D001587 ORTHO05D008791 4.9e-96 355.5 398 52.8
TAR628G1547 Trochodendron aralioides HOM05D001587 ORTHO05D008791 1.8e-95 353.6 364 56.3
vmacro04308 Vaccinium macrocarpon HOM05D001587 ORTHO05D008791 2.4e-95 353.2 550 41.8
ClCG08G014710 Citrullus lanatus HOM05D001587 ORTHO05D008791 9.1e-95 351.3 341 58.4
SGA_v2.0_scaffold11G05847 Striga asiatica HOM05D001587 ORTHO05D008791 2.1e-91 340.1 278 65.1
Dinv39461 Davidia involucrata HOM05D001587 ORTHO05D008791 2.8e-91 339.7 238 72.7
SalBow7G1285 Salvia bowleyana HOM05D001587 ORTHO05D008791 1.0e-90 337.8 260 68.5
AUR62014470 Chenopodium quinoa HOM05D001587 ORTHO05D008791 6.8e-90 335.1 232 70.3
Actinidia15364 Actinidia chinensis HOM05D001587 ORTHO05D002654 8.9e-90 334.7 285 66.0
Psat0s471g0160 Pisum sativum HOM05D001587 ORTHO05D008791 1.6e-86 323.9 233 68.7
Ca_15490_v3 Cicer arietinum L. HOM05D001587 ORTHO05D008791 2.0e-86 323.6 287 58.9
Mapoly0042s0010 Marchantia polymorpha HOM05D001587 ORTHO05D008791 1.0e-85 321.2 307 54.1
Pp3c23_9730 Physcomitrium patens HOM05D001587 ORTHO05D008791 1.4e-82 310.8 293 54.6
AagrBONN_evm.TU.Sc2ySwM_344.3744 Anthoceros agrestis HOM05D001587 ORTHO05D008791 2.3e-82 310.1 285 55.8
SMO169G0295 Selaginella moellendorffii HOM05D001587 ORTHO05D008791 5.2e-82 308.9 290 54.1
vmacro07875 Vaccinium macrocarpon HOM05D001587 ORTHO05D008791 6.6e-77 292.0 184 77.2
MD08G1024000 Malus domestica HOM05D001587 ORTHO05D008791 1.8e-74 283.9 369 48.8
Ca_29810_v3 Cicer arietinum L. HOM05D001587 ORTHO05D008791 5.6e-60 235.7 180 67.2
AagrBONN_evm.TU.Sc2ySwM_344.3737 Anthoceros agrestis HOM05D001587 ORTHO05D008791 1.8e-58 230.7 206 57.8
Glyma.04G029000 Glycine max HOM05D001587 ORTHO05D008791 4.6e-54 216.1 142 72.5
Cre13.g572000 Chlamydomonas reinhardtii HOM05D001587 ORTHO05D008791 8.7e-53 211.8 299 42.1
Dinv31791 Davidia involucrata HOM05D001587 ORTHO05D002654 1.5e-52 211.1 197 59.9
Psat3g187600 Pisum sativum HOM05D001587 ORTHO05D008791 2.5e-52 210.3 170 61.2
PRCOL_00005810 Prasinoderma coloniale HOM05D001587 ORTHO05D008791 6.9e-50 202.2 299 40.1
MCO14G527 Micromonas commoda HOM05D001587 ORTHO05D008791 3.8e-48 196.4 205 48.8
Manes.18G021412 Manihot esculenta HOM05D001587 ORTHO05D008791 1.7e-45 187.6 234 48.7
Psat3g187640 Pisum sativum HOM05D001587 ORTHO05D008791 4.8e-43 179.5 199 52.8
Psat5g097560 Pisum sativum HOM05D000922 ORTHO05D008791 5.3e-34 149.4 216 40.7
Hma1.2p1_1194F.1_g265720 Hydrangea macrophylla HOM05D001587 ORTHO05D014867 1.0e-29 135.2 98 69.4
Psat5g097640 Pisum sativum HOM05D000922 ORTHO05D001851 2.3e-29 134.0 169 44.4
AL1G52690 Arabidopsis lyrata HOM05D001587 ORTHO05D014867 4.3e-28 129.8 105 60.0
SEGI_08976 Sequoiadendron giganteum HOM05D001587 ORTHO05D008791 5.0e-24 116.3 109 57.8
SEGI_23158 Sequoiadendron giganteum HOM05D001587 ORTHO05D008791 1.1e-23 115.2 107 57.9
Ca_02074_v3 Cicer arietinum L. HOM05D001587 ORTHO05D008791 9.3e-23 112.1 100 59.0
CARHR174630 Cardamine hirsuta HOM05D001587 ORTHO05D014867 3.5e-22 110.2 91 60.4
CARHR293210 Cardamine hirsuta HOM05D001587 ORTHO05D008791 6.9e-18 95.9 64 75.0
COL.COLO4_00685 Corchorus olitorius HOM05D030008 ORTHO05D034598 1.9e-15 87.8 147 34.0
SEGI_08644 Sequoiadendron giganteum HOM05D001587 ORTHO05D014867 3.2e-15 87.0 77 51.9
CSS0001111 Camellia sinensis var. sinensis HOM05D001587 ORTHO05D014867 3.0e-13 80.5 57 70.2
CSS0020626 Camellia sinensis var. sinensis HOM05D001587 ORTHO05D014867 3.0e-13 80.5 57 70.2
CSS0029664 Camellia sinensis var. sinensis HOM05D001587 ORTHO05D014867 3.0e-13 80.5 57 70.2
CSS0031048 Camellia sinensis var. sinensis HOM05D001587 ORTHO05D014867 3.0e-13 80.5 57 70.2
CSS0048350 Camellia sinensis var. sinensis HOM05D001587 ORTHO05D014867 3.0e-13 80.5 57 70.2
CSS0002416 Camellia sinensis var. sinensis HOM05D001587 ORTHO05D014867 3.9e-13 80.1 75 58.7
CSS0016398 Camellia sinensis var. sinensis HOM05D001587 ORTHO05D014867 3.9e-13 80.1 57 70.2
CSS0046073 Camellia sinensis var. sinensis HOM05D001587 ORTHO05D014867 3.9e-13 80.1 57 70.2
Psat4g126360 Pisum sativum HOM05D001587 ORTHO05D037360 8.8e-13 79.0 55 67.3
Potri.002G030701 Populus trichocarpa HOM05D001587 ORTHO05D014867 1.5e-12 78.2 132 39.4


User provided reference genes

Program Settings