Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400003469 Solanum tuberosum HOM05D002267 ORTHO05D005902 4.5e-291 1003.8 495 100.0
Solyc06g005370.3 Solanum lycopersicum HOM05D002267 ORTHO05D005902 5.2e-287 990.3 495 97.6
Sopen06g001330 Solanum pennellii HOM05D002267 ORTHO05D005902 9.8e-286 986.1 495 97.6
Nitab4.5_0011661g0010 Nicotiana tabacum HOM05D002267 ORTHO05D005902 2.1e-280 968.4 495 96.4
CAN.G185.18 Capsicum annuum HOM05D002267 ORTHO05D005902 1.5e-278 962.2 495 95.6
Nitab4.5_0002077g0130 Nicotiana tabacum HOM05D002267 ORTHO05D005902 2.5e-273 944.9 510 92.2
Peaxi162Scf00465g00103 Petunia axillaris HOM05D002267 ORTHO05D005902 3.1e-271 937.9 506 91.1
Actinidia36296 Actinidia chinensis HOM05D002267 ORTHO05D005902 2.4e-252 875.2 494 85.2
DCAR_007527 Daucus carota HOM05D002267 ORTHO05D005902 4.2e-252 874.4 496 84.9
Ciclev10011558m.g Citrus clementina HOM05D002267 ORTHO05D005902 2.7e-251 871.7 489 85.5
Haze_14088 Corylus avellana HOM05D002267 ORTHO05D005902 1.7e-250 869.0 491 84.7
ClCG11G005190 Citrullus lanatus HOM05D002267 ORTHO05D005902 8.7e-250 866.7 497 84.1
Dinv34871 Davidia involucrata HOM05D002267 ORTHO05D005902 1.1e-249 866.3 493 85.8
Hund16106 Selenicereus undatus HOM05D002267 ORTHO05D005902 1.5e-249 865.9 494 85.6
Cfa007986 Carpinus fangiana HOM05D002267 ORTHO05D005902 4.3e-249 864.4 491 84.7
QL02p053833 Quercus lobata HOM05D002267 ORTHO05D005902 4.3e-249 864.4 489 84.3
Cpa.g.sc652.3 Carica papaya HOM05D002267 ORTHO05D005902 1.3e-248 862.8 492 84.6
Oeu049334.1 Olea europaea HOM05D002267 ORTHO05D005902 1.3e-248 862.8 498 84.9
vmacro05590 Vaccinium macrocarpon HOM05D002267 ORTHO05D005902 2.1e-248 862.1 493 85.2
FvH4_6g45710 Fragaria vesca HOM05D002267 ORTHO05D005902 2.8e-248 861.7 495 83.8
Sed0022523 Sechium edule HOM05D002267 ORTHO05D005902 8.1e-248 860.1 497 83.3
Thecc.07G119800 Theobroma cacao HOM05D002267 ORTHO05D005902 1.8e-247 859.0 492 84.3
Aqoxy3G03816 Aquilegia oxysepala HOM05D002267 ORTHO05D005902 2.4e-247 858.6 492 83.7
CsaV3_5G038940 Cucumis sativus L. HOM05D002267 ORTHO05D005902 3.1e-247 858.2 493 83.6
FAN14G5533 Fragaria x ananassa HOM05D002267 ORTHO05D005902 3.1e-247 858.2 495 83.4
CANSAT64G2636 Cannabis sativa HOM05D002267 ORTHO05D005902 4.0e-247 857.8 496 84.5
SalBow1G1113 Salvia bowleyana HOM05D002267 ORTHO05D005902 5.3e-247 857.4 493 84.4
Lj2A1079T37 Lonicera japonica HOM05D002267 ORTHO05D005902 6.9e-247 857.1 495 84.2
CiPaw.04G004900 Carya illinoinensis HOM05D002267 ORTHO05D005902 9.0e-247 856.7 492 83.5
MD17G1071600 Malus domestica HOM05D002267 ORTHO05D005902 9.0e-247 856.7 496 84.1
Cc03_g12570 Coffea canephora HOM05D002267 ORTHO05D005902 1.2e-246 856.3 497 84.3
FAN09G4431 Fragaria x ananassa HOM05D002267 ORTHO05D005902 1.2e-246 856.3 495 83.6
COL.COLO4_17522 Corchorus olitorius HOM05D002267 ORTHO05D005902 2.0e-246 855.5 484 85.3
TAR629G0265 Trochodendron aralioides HOM05D002267 ORTHO05D005902 5.8e-246 854.0 496 83.7
AUR62014559 Chenopodium quinoa HOM05D002267 ORTHO05D005902 7.6e-246 853.6 493 83.0
FAN26G1557 Fragaria x ananassa HOM05D002267 ORTHO05D005902 7.6e-246 853.6 495 83.2
MSTRG.15422 Avicennia marina HOM05D002267 ORTHO05D005902 6.4e-245 850.5 494 84.0
AUR62008939 Chenopodium quinoa HOM05D002267 ORTHO05D005902 2.4e-244 848.6 493 82.4
Duzib213G0616 Durio zibethinus HOM05D002267 ORTHO05D005902 4.2e-244 847.8 491 83.3
RcHm_v2.0_Chr2g0163861 Rosa chinensis HOM05D002267 ORTHO05D005902 4.2e-244 847.8 491 83.1
Hund16105 Selenicereus undatus HOM05D002267 ORTHO05D005902 7.1e-244 847.0 532 79.9
FAN23G1730 Fragaria x ananassa HOM05D002267 ORTHO05D005902 9.3e-244 846.7 495 82.8
Gorai.002G053200 Gossypium raimondii HOM05D002267 ORTHO05D005902 9.3e-244 846.7 491 83.5
Eucgr.J01450 Eucalyptus grandis HOM05D002267 ORTHO05D005902 1.2e-243 846.3 496 82.7
MELO3C022075.2 Cucumis melo HOM05D002267 ORTHO05D005902 2.7e-243 845.1 487 83.0
TWI34G0765 Tripterygium wilfordii HOM05D002267 ORTHO05D005902 2.7e-243 845.1 492 83.3
Gohir.D13G154300 Gossypium hirsutum HOM05D002267 ORTHO05D005902 3.5e-243 844.7 491 82.7
PGR042G2823 Punica granatum HOM05D002267 ORTHO05D005902 4.6e-243 844.3 493 82.6
Atru.chr1.1114 Acer truncatum HOM05D002267 ORTHO05D005902 6.0e-243 844.0 492 83.1
Manes.02G064400 Manihot esculenta HOM05D002267 ORTHO05D005902 7.9e-243 843.6 492 82.7
EL10Ac2g04655 Beta vulgaris HOM05D002267 ORTHO05D005902 1.0e-242 843.2 494 83.0
Gorai.013G174300 Gossypium raimondii HOM05D002267 ORTHO05D005902 1.0e-242 843.2 491 82.7
PSO675G5323 Papaver somniferum HOM05D002267 ORTHO05D005902 1.0e-242 843.2 495 82.4
Gohir.D01G042400 Gossypium hirsutum HOM05D002267 ORTHO05D005902 1.3e-242 842.8 491 83.1
Gohir.A13G150000 Gossypium hirsutum HOM05D002267 ORTHO05D005902 3.0e-242 841.6 491 82.7
Potri.017G109500 Populus trichocarpa HOM05D002267 ORTHO05D005902 3.0e-242 841.6 496 82.1
PSO541G0287 Papaver somniferum HOM05D002267 ORTHO05D005902 5.1e-242 840.9 495 81.8
Gohir.A01G052800 Gossypium hirsutum HOM05D002267 ORTHO05D005902 6.7e-242 840.5 491 82.7
HanXRQChr17g0559871 Helianthus annuus HOM05D002267 ORTHO05D005902 5.6e-241 837.4 493 81.9
Lsat_1_v5_gn_2_86320 Lactuca sativa HOM05D002267 ORTHO05D005902 2.8e-240 835.1 498 81.5
Potri.004G106200 Populus trichocarpa HOM05D002267 ORTHO05D005902 3.6e-240 834.7 496 81.5
arahy.Tifrunner.gnm1.ann1.D1YG1E Arachis hypogaea HOM05D002267 ORTHO05D005902 2.4e-239 832.0 493 81.1
Lalb_Chr04g0258191 Lupinus albus HOM05D002267 ORTHO05D005902 2.4e-239 832.0 494 81.8
Lalb_Chr17g0336641 Lupinus albus HOM05D002267 ORTHO05D005902 2.4e-239 832.0 494 81.2
Lj1g0004668 Lotus japonicus HOM05D002267 ORTHO05D005902 1.2e-238 829.7 494 81.8
Medtr7g019260 Medicago truncatula HOM05D002267 ORTHO05D005902 1.2e-238 829.7 487 83.0
Ca_06721_v3 Cicer arietinum L. HOM05D002267 ORTHO05D005902 2.6e-238 828.6 488 82.6
Migut.K00870 Erythranthe guttata HOM05D002267 ORTHO05D005902 2.2e-237 825.5 492 81.7
arahy.Tifrunner.gnm1.ann1.Y9SFAF Arachis hypogaea HOM05D002267 ORTHO05D005902 2.9e-237 825.1 493 80.3
MBI14_g41042_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D005902 2.9e-237 825.1 497 81.1
ECA238G0812 Erigeron canadensis HOM05D002267 ORTHO05D005902 8.4e-237 823.5 479 82.5
Sabra04G0076200 Salix brachista HOM05D002267 ORTHO05D005902 1.1e-236 823.2 530 76.4
Glyma.18G279400 Glycine max HOM05D002267 ORTHO05D005902 4.2e-236 821.2 494 80.4
Ah.10g037400 Amaranthus hybridus HOM05D002267 ORTHO05D005902 5.5e-236 820.8 473 83.3
A06p39620 Brassica napus HOM05D002267 ORTHO05D005902 9.3e-236 820.1 492 80.9
Carub.0006s2794 Capsella rubella HOM05D002267 ORTHO05D005902 1.2e-235 819.7 495 79.4
BraA06t26877Z Brassica rapa HOM05D002267 ORTHO05D005902 1.6e-235 819.3 492 80.9
SGA_v2.0_scaffold62G21549 Striga asiatica HOM05D002267 ORTHO05D005902 2.1e-235 818.9 496 80.2
Psat3g192200 Pisum sativum HOM05D002267 ORTHO05D005902 2.7e-235 818.5 487 81.9
CARHR260400 Cardamine hirsuta HOM05D002267 ORTHO05D005902 3.5e-235 818.1 493 79.5
Sc14g0003340 Simmondsia chinensis HOM05D002267 ORTHO05D005902 6.0e-235 817.4 495 79.6
Aa31LG2G3660 Aethionema arabicum HOM05D002267 ORTHO05D005902 2.3e-234 815.5 496 78.8
BcaB07g30054 Brassica carinata HOM05D002267 ORTHO05D005902 2.3e-234 815.5 489 79.8
AL6G43080 Arabidopsis lyrata HOM05D002267 ORTHO05D005902 3.9e-234 814.7 495 79.0
Thhalv10004074m.g Eutrema salsugineum HOM05D002267 ORTHO05D005902 1.9e-233 812.4 489 80.2
AT3G30841 Arabidopsis thaliana HOM05D002267 ORTHO05D005902 2.5e-233 812.0 491 79.8
BcaC06g33731 Brassica carinata HOM05D002267 ORTHO05D005902 5.6e-233 810.8 487 80.7
A02p37120 Brassica napus HOM05D002267 ORTHO05D005902 7.4e-233 810.4 488 78.9
BolC7t44387H Brassica oleracea HOM05D002267 ORTHO05D005902 7.4e-233 810.4 489 80.6
C07p38670 Brassica napus HOM05D002267 ORTHO05D005902 9.6e-233 810.1 489 80.8
VMungo1383G0144 Vigna mungo HOM05D002267 ORTHO05D005902 9.6e-233 810.1 493 78.9
AL5G20480 Arabidopsis lyrata HOM05D002267 ORTHO05D005902 6.2e-232 807.4 491 79.8
BolC2t11669H Brassica oleracea HOM05D002267 ORTHO05D005902 3.1e-231 805.1 486 78.6
BraA02t08698Z Brassica rapa HOM05D002267 ORTHO05D005902 1.2e-230 803.1 496 77.6
AT4G09520 Arabidopsis thaliana HOM05D002267 ORTHO05D005902 1.5e-230 802.7 493 78.3
HPP92_013287 Vanilla planifolia HOM05D002267 ORTHO05D005902 3.4e-230 801.6 494 79.8
Phvul.008G021600 Phaseolus vulgaris HOM05D002267 ORTHO05D005902 7.6e-230 800.4 493 78.3
ATR0824G083 Amborella trichopoda HOM05D002267 ORTHO05D005902 1.3e-229 799.7 484 80.2
THA.LOC104805546 Tarenaya hassleriana HOM05D002267 ORTHO05D005902 1.7e-229 799.3 497 78.7
C02p56120 Brassica napus HOM05D002267 ORTHO05D005902 6.5e-229 797.3 488 78.1
CDE02G3890 Ceratophyllum demersum HOM05D002267 ORTHO05D005902 1.7e-221 772.7 488 78.1
FvH4_5g30870 Fragaria vesca HOM05D002267 ORTHO05D005902 2.2e-221 772.3 443 84.0
CDE04G2341 Ceratophyllum demersum HOM05D002267 ORTHO05D005902 5.0e-221 771.2 491 77.2
Dinv33904 Davidia involucrata HOM05D002267 ORTHO05D005902 2.3e-218 762.3 436 84.9
BcaB07g30055 Brassica carinata HOM05D002267 ORTHO05D005902 2.5e-217 758.8 426 83.8
SEGI_04709 Sequoiadendron giganteum HOM05D002267 ORTHO05D005902 2.2e-216 755.7 492 76.4
Zm00001eb137710 Zea mays HOM05D002267 ORTHO05D005902 2.2e-216 755.7 513 73.1
HanXRQChr07g0200151 Helianthus annuus HOM05D002267 ORTHO05D005902 4.5e-214 748.0 441 81.6
GSVIVG01008609001 Vitis vinifera HOM05D002267 ORTHO05D005902 4.2e-212 741.5 443 82.6
Sp2g18250 Schrenkiella parvula HOM05D002267 ORTHO05D005902 5.1e-210 734.6 444 80.2
Mapoly0028s0072 Marchantia polymorpha HOM05D002267 ORTHO05D005902 1.7e-205 719.5 488 72.5
Os12g0536000 Oryza sativa ssp. japonica HOM05D002267 ORTHO05D005902 5.0e-205 718.0 439 79.5
SMO239G0110 Selaginella moellendorffii HOM05D002267 ORTHO05D005902 2.4e-199 699.1 485 71.5
TPR.G3251 Trifolium pratense HOM05D002267 ORTHO05D005902 5.3e-199 698.0 383 87.7
Pp3c1_4540 Physcomitrium patens HOM05D002267 ORTHO05D005902 2.0e-198 696.0 487 69.2
unitig_748.g7015 Utricularia gibba HOM05D002267 ORTHO05D005902 3.5e-190 668.7 404 80.0
MBI14_g39140_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D005902 4.5e-190 668.3 491 69.9
Nn4g23627 Nelumbo nucifera HOM05D002267 ORTHO05D005902 1.8e-186 656.4 493 67.7
MBI14_g13654_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D005902 3.7e-184 648.7 471 70.9
CSS0025473 Camellia sinensis var. sinensis HOM05D002267 ORTHO05D005902 4.1e-183 645.2 381 82.2
FAN05G0821 Fragaria x ananassa HOM05D002267 ORTHO05D005902 1.1e-180 637.1 385 80.5
CBR_g48938 Chara braunii HOM05D002267 ORTHO05D005902 6.1e-179 631.3 506 62.6
RcHm_v2.0_Chr5g0053071 Rosa chinensis HOM05D002267 ORTHO05D005902 2.7e-174 615.9 386 79.3
Psat0s4662g0040 Pisum sativum HOM05D002267 ORTHO05D005902 1.3e-173 613.6 493 65.1
vmacro23424 Vaccinium macrocarpon HOM05D002267 ORTHO05D005902 1.5e-164 583.6 461 68.1
Prupe.3G243300 Prunus persica HOM05D002267 ORTHO05D005902 1.2e-163 580.5 348 81.3
Sabra17G0091700 Salix brachista HOM05D002267 ORTHO05D008106 2.7e-158 562.8 382 73.0
Cre12.g527400 Chlamydomonas reinhardtii HOM05D002267 ORTHO05D005902 4.0e-146 522.3 529 50.9
FAN18G0049 Fragaria x ananassa HOM05D002267 ORTHO05D005902 3.1e-138 496.1 266 89.5
PRCOL_00003451 Prasinoderma coloniale HOM05D002267 ORTHO05D005902 1.4e-122 444.1 472 50.8
HanXRQChr03g0070911 Helianthus annuus HOM05D002267 ORTHO05D005902 7.6e-121 438.3 253 83.8
Zm00001eb410550 Zea mays HOM05D002267 ORTHO05D005902 3.1e-114 416.4 255 79.2
FAN13G3322 Fragaria x ananassa HOM05D002267 ORTHO05D005902 1.7e-112 410.6 228 87.7
HanXRQChr03g0070931 Helianthus annuus HOM05D002267 ORTHO05D005902 8.7e-109 398.3 301 67.8
MBI14_g42567_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D005902 2.8e-107 393.3 482 48.1
AagrBONN_evm.TU.Sc2ySwM_228.1779 Anthoceros agrestis HOM05D002267 ORTHO05D005902 4.8e-107 392.5 238 77.7
AagrBONN_evm.TU.Sc2ySwM_362.1960 Anthoceros agrestis HOM05D002267 ORTHO05D005902 2.6e-105 386.7 435 50.6
BcaC03g17613 Brassica carinata HOM05D002267 ORTHO05D005902 6.1e-102 375.6 251 70.1
MD09G1080600 Malus domestica HOM05D002267 ORTHO05D005902 2.5e-100 370.2 303 67.3
HPP92_013297 Vanilla planifolia HOM05D002267 ORTHO05D005902 5.5e-95 352.4 237 73.8
FAN02G0256 Fragaria x ananassa HOM05D002267 ORTHO05D005902 3.6e-94 349.7 312 59.9
SHI33593 Sapria himalayana HOM05D002267 ORTHO05D005902 2.7e-86 323.6 240 66.2
Duzib177G0042 Durio zibethinus HOM05D002267 ORTHO05D005902 1.1e-79 301.6 249 64.7
TPR.G11470 Trifolium pratense HOM05D002267 ORTHO05D005902 3.4e-60 236.9 159 71.1
TAR374G1196 Trochodendron aralioides HOM05D002267 ORTHO05D005902 7.5e-60 235.7 260 52.3
Oeu025125.1 Olea europaea HOM05D002267 ORTHO05D005902 2.5e-55 220.7 150 72.7
BcaC06g30839 Brassica carinata HOM05D002267 ORTHO05D005902 8.3e-51 205.7 288 45.1
HanXRQChr17g0560661 Helianthus annuus HOM05D002267 ORTHO05D027489 1.7e-48 198.0 103 89.3
MBI14_g30826_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D027489 5.2e-45 186.4 104 86.5
BcaB07g30056 Brassica carinata HOM05D002267 ORTHO05D027489 6.8e-45 186.0 96 88.5
HPP92_013296 Vanilla planifolia HOM05D002267 ORTHO05D005902 3.4e-44 183.7 151 65.6
CARHR060050 Cardamine hirsuta HOM05D002267 ORTHO05D005902 1.1e-42 178.7 146 58.9
MD09G1080700 Malus domestica HOM05D002267 ORTHO05D005902 3.0e-40 170.6 117 68.4
Sed0003994 Sechium edule HOM05D002267 ORTHO05D007330 6.2e-38 162.9 148 56.8
GSVIVG01036480001 Vitis vinifera HOM05D002267 ORTHO05D005902 1.2e-30 138.7 75 85.3
MBI14_g13653_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D035901 2.1e-30 137.9 162 47.5
Duzib168G0178 Durio zibethinus HOM05D002267 ORTHO05D029252 8.1e-30 136.0 79 78.5
Glyma.20G047400 Glycine max HOM05D002267 ORTHO05D029252 1.9e-26 124.8 85 70.6
Glyma.04G110800 Glycine max HOM05D002267 ORTHO05D029252 2.7e-17 94.4 93 53.8
CAN.G464.25 Capsicum annuum HOM05D002267 ORTHO05D020089 1.3e-16 92.0 61 80.3
FAN18G1196 Fragaria x ananassa HOM05D002267 ORTHO05D035901 3.9e-16 90.5 74 59.5
BcaB04g17555 Brassica carinata HOM05D002267 ORTHO05D092878 2.4e-10 71.2 51 68.6
Glyma.U031218 Glycine max HOM05D002267 ORTHO05D029252 2.4e-10 71.2 36 86.1
RcHm_v2.0_Chr5g0053081 Rosa chinensis HOM05D002267 ORTHO05D035901 6.0e-09 66.6 51 60.8
Nn5g27547 Nelumbo nucifera HOM05D002267 ORTHO05D027489 1.1e-07 62.4 30 86.7
MELO3C034926.2 Cucumis melo HOM05D002267 ORTHO05D001928 4.8e-06 57.0 38 73.7


User provided reference genes

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