Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400002708 Solanum tuberosum HOM05D007469 ORTHO05D003360 1.5e-85 320.5 321 100.0
Sopen09g004030 Solanum pennellii HOM05D007469 ORTHO05D003360 3.5e-74 282.7 321 90.0
Solyc09g009290.3 Solanum lycopersicum HOM05D007469 ORTHO05D003360 2.9e-73 279.6 321 89.1
CAN.G824.9 Capsicum annuum HOM05D007469 ORTHO05D003360 2.2e-60 236.9 322 77.3
Nitab4.5_0001969g0030 Nicotiana tabacum HOM05D007469 ORTHO05D003360 2.4e-51 206.8 330 76.4
Nitab4.5_0004567g0040 Nicotiana tabacum HOM05D007469 ORTHO05D003360 1.3e-49 201.1 325 76.9
Peaxi162Scf00290g00012 Petunia axillaris HOM05D007469 ORTHO05D003360 6.2e-39 165.6 323 66.9
CANSAT64G2834 Cannabis sativa HOM05D007469 ORTHO05D003360 1.3e-23 114.8 324 61.7
CANSAT64G0136 Cannabis sativa HOM05D007469 ORTHO05D003360 1.6e-23 114.4 303 63.0
TAR371G0800 Trochodendron aralioides HOM05D007469 ORTHO05D003360 7.6e-21 105.5 285 67.4
Lj7C409T15 Lonicera japonica HOM05D007469 ORTHO05D003360 1.3e-20 104.8 326 50.6
Cc02_g31090 Coffea canephora HOM05D007469 ORTHO05D003360 8.4e-20 102.1 255 67.8
Haze_14632 Corylus avellana HOM05D007469 ORTHO05D003360 1.4e-19 101.3 332 60.5
Oeu047333.1 Olea europaea HOM05D007469 ORTHO05D003360 7.1e-19 99.0 259 56.4
MSTRG.15502 Avicennia marina HOM05D007469 ORTHO05D003360 9.3e-19 98.6 167 44.3
Sc18g0006210 Simmondsia chinensis HOM05D007469 ORTHO05D003360 1.2e-18 98.2 311 33.8
CiPaw.03G035300 Carya illinoinensis HOM05D007469 ORTHO05D003360 4.6e-18 96.3 272 61.4
QL02p077481 Quercus lobata HOM05D007469 ORTHO05D003360 4.6e-18 96.3 309 59.9
Cfa007462 Carpinus fangiana HOM05D007469 ORTHO05D003360 1.7e-17 94.4 331 60.7
Sabra16G0184600 Salix brachista HOM05D007469 ORTHO05D003360 1.7e-17 94.4 259 58.7
Eucgr.J02176 Eucalyptus grandis HOM05D007469 ORTHO05D003360 2.3e-17 94.0 165 45.5
Manes.15G180348 Manihot esculenta HOM05D007469 ORTHO05D003360 3.0e-17 93.6 265 57.4
Dinv35031 Davidia involucrata HOM05D000028 ORTHO05D000390 3.9e-17 93.2 118 50.8
Sed0015996 Sechium edule HOM05D007469 ORTHO05D003360 1.1e-16 91.7 132 51.5
Dinv33523 Davidia involucrata HOM05D007469 ORTHO05D003360 1.5e-16 91.3 262 66.8
Hma1.2p1_0697F.1_g204960 Hydrangea macrophylla HOM05D007469 ORTHO05D003360 1.9e-16 90.9 200 72.0
Lsat_1_v5_gn_4_181880 Lactuca sativa HOM05D007469 ORTHO05D003360 1.9e-16 90.9 221 76.9
EL10Ac8g18402 Beta vulgaris HOM05D007469 ORTHO05D003360 5.6e-16 89.4 173 37.0
MELO3C021518.2 Cucumis melo HOM05D007469 ORTHO05D003360 5.6e-16 89.4 183 36.6
HanXRQChr15g0488381 Helianthus annuus HOM05D007469 ORTHO05D003360 5.6e-16 89.4 116 48.3
CsaV3_5G037380 Cucumis sativus L. HOM05D007469 ORTHO05D003360 9.6e-16 88.6 179 43.6
Actinidia06038 Actinidia chinensis HOM05D007469 ORTHO05D003360 1.6e-15 87.8 321 53.9
DCAR_013974 Daucus carota HOM05D007469 ORTHO05D003360 2.8e-15 87.0 260 66.2
ECA232G1734 Erigeron canadensis HOM05D000006 ORTHO05D000001 2.8e-15 87.0 196 34.7
Potri.001G295200 Populus trichocarpa HOM05D007469 ORTHO05D003360 6.2e-15 85.9 255 65.9
TWI56G0985 Tripterygium wilfordii HOM05D005889 ORTHO05D007495 6.2e-15 85.9 117 46.2
Prupe.3G132600 Prunus persica HOM05D007469 ORTHO05D003360 8.1e-15 85.5 301 55.1
AL7G49850 Arabidopsis lyrata HOM05D007469 ORTHO05D003360 1.1e-14 85.1 136 46.3
Ciclev10013529m.g Citrus clementina HOM05D007469 ORTHO05D003360 1.1e-14 85.1 114 57.0
SGA_v2.0_scaffold30G12492 Striga asiatica HOM05D007469 ORTHO05D003360 1.4e-14 84.7 165 40.0
GSVIVG01032525001 Vitis vinifera HOM05D007469 ORTHO05D003360 1.4e-14 84.7 200 72.5
A04p13090 Brassica napus HOM05D007469 ORTHO05D003360 1.8e-14 84.3 132 40.9
C04p46840 Brassica napus HOM05D007469 ORTHO05D003360 1.8e-14 84.3 147 42.2
BolC4t26272H Brassica oleracea HOM05D007469 ORTHO05D003360 1.8e-14 84.3 147 42.2
ClCG00G005290 Citrullus lanatus HOM05D007469 ORTHO05D003360 2.4e-14 84.0 174 46.6
ClCG09G018690 Citrullus lanatus HOM05D007469 ORTHO05D003360 2.4e-14 84.0 174 46.6
ClCG09G018760 Citrullus lanatus HOM05D007469 ORTHO05D003360 2.4e-14 84.0 174 46.6
Rhsim10G0026300 Rhododendron simsii HOM05D007469 ORTHO05D003360 3.1e-14 83.6 174 44.8
Thecc.04G004300 Theobroma cacao HOM05D007469 ORTHO05D003360 3.1e-14 83.6 255 56.9
BcaB06g27455 Brassica carinata HOM05D007469 ORTHO05D003360 9.0e-14 82.0 132 40.2
Duzib264G1016 Durio zibethinus HOM05D007469 ORTHO05D003360 9.0e-14 82.0 255 62.7
Lalb_Chr08g0233251 Lupinus albus HOM05D007469 ORTHO05D003360 9.0e-14 82.0 256 70.3
Rhsim10G0026800 Rhododendron simsii HOM05D007469 ORTHO05D003360 9.0e-14 82.0 182 48.9
MBI14_g12788_MAGBIO Magnolia biondii HOM05D007469 ORTHO05D003360 1.2e-13 81.6 254 68.1
CARHR261930 Cardamine hirsuta HOM05D007469 ORTHO05D003360 2.0e-13 80.9 134 38.8
Sp7g01840 Schrenkiella parvula HOM05D007469 ORTHO05D003360 2.0e-13 80.9 132 46.2
BraA04t16968Z Brassica rapa HOM05D007469 ORTHO05D003360 2.6e-13 80.5 132 44.7
CSS0038198 Camellia sinensis var. sinensis HOM05D007469 ORTHO05D003360 2.6e-13 80.5 265 64.5
Carub.0007s3552 Capsella rubella HOM05D007469 ORTHO05D003360 2.6e-13 80.5 160 41.9
CDE10G0535 Ceratophyllum demersum HOM05D007469 ORTHO05D003360 3.4e-13 80.1 218 63.3
PGR083G2689 Punica granatum HOM05D007469 ORTHO05D003360 3.4e-13 80.1 111 43.2
Gohir.A07G218400 Gossypium hirsutum HOM05D007469 ORTHO05D003360 4.5e-13 79.7 255 63.5
Lj1g0016351 Lotus japonicus HOM05D007469 ORTHO05D003360 4.5e-13 79.7 225 71.6
SalBow7G0002 Salvia bowleyana HOM05D007469 ORTHO05D003360 4.5e-13 79.7 155 46.5
Aqoxy3G00905 Aquilegia oxysepala HOM05D007469 ORTHO05D003360 5.8e-13 79.3 114 39.5
Glyma.11G211316 Glycine max HOM05D007469 ORTHO05D003360 7.6e-13 79.0 259 67.2
AT5G40160 Arabidopsis thaliana HOM05D007469 ORTHO05D003360 1.3e-12 78.2 185 38.9
Thhalv10027842m.g Eutrema salsugineum HOM05D007469 ORTHO05D003360 1.3e-12 78.2 132 39.4
Gohir.D07G225500 Gossypium hirsutum HOM05D007469 ORTHO05D003360 1.3e-12 78.2 256 62.1
Gorai.001G259900 Gossypium raimondii HOM05D007469 ORTHO05D003360 1.3e-12 78.2 256 62.5
MD05G1026500 Malus domestica HOM05D007469 ORTHO05D003360 1.3e-12 78.2 212 75.0
Atru.chr8.2427 Acer truncatum HOM05D007469 ORTHO05D003360 2.2e-12 77.4 255 61.2
FvH4_5g31250 Fragaria vesca HOM05D007469 ORTHO05D003360 2.2e-12 77.4 275 60.7
Ah.10g030590 Amaranthus hybridus HOM05D007469 ORTHO05D003360 2.9e-12 77.0 116 39.7
Hund20037 Selenicereus undatus HOM05D007469 ORTHO05D009499 3.8e-12 76.6 116 42.2
THA.LOC104805414 Tarenaya hassleriana HOM05D007469 ORTHO05D003360 3.8e-12 76.6 150 32.7
AUR62010918 Chenopodium quinoa HOM05D004175 ORTHO05D004664 4.9e-12 76.3 137 48.2
Migut.K01363 Erythranthe guttata HOM05D007469 ORTHO05D003360 4.9e-12 76.3 79 51.9
Nn4g22877 Nelumbo nucifera HOM05D007469 ORTHO05D003360 4.9e-12 76.3 59 61.0
RcHm_v2.0_Chr7g0226491 Rosa chinensis HOM05D007469 ORTHO05D003360 4.9e-12 76.3 255 63.1
CSS0050487 Camellia sinensis var. sinensis HOM05D007469 ORTHO05D003360 6.4e-12 75.9 71 52.1
TPR.G666 Trifolium pratense HOM05D007469 ORTHO05D003360 8.4e-12 75.5 157 38.9
unitig_0.g2798 Utricularia gibba HOM05D007469 ORTHO05D003360 1.1e-11 75.1 58 58.6
Ca_02547_v3 Cicer arietinum L. HOM05D007469 ORTHO05D003360 2.4e-11 73.9 200 77.5
Medtr2g048680 Medicago truncatula HOM05D007469 ORTHO05D003360 2.4e-11 73.9 153 36.6
AUR62021431 Chenopodium quinoa HOM05D007469 ORTHO05D003360 3.2e-11 73.6 59 59.3
Glyma.18G044300 Glycine max HOM05D007469 ORTHO05D003360 3.2e-11 73.6 274 61.7
Actinidia36064 Actinidia chinensis HOM05D007469 ORTHO05D003360 4.2e-11 73.2 307 59.3
Aa31LG9G1510 Aethionema arabicum HOM05D007469 ORTHO05D003360 4.2e-11 73.2 127 40.9
arahy.Tifrunner.gnm1.ann1.5026CX Arachis hypogaea HOM05D007469 ORTHO05D003360 4.2e-11 73.2 60 60.0
VMungo0540G0432 Vigna mungo HOM05D007469 ORTHO05D003360 1.6e-10 71.2 119 37.8
Psat0s5166g0040 Pisum sativum HOM05D007469 ORTHO05D003360 2.1e-10 70.9 275 55.3
Cpa.g.sc88.45 Carica papaya HOM05D007469 ORTHO05D003360 2.7e-10 70.5 54 63.0
Phvul.006G086600 Phaseolus vulgaris HOM05D007469 ORTHO05D003360 3.5e-10 70.1 114 37.7
ATR1159G025 Amborella trichopoda HOM05D007469 ORTHO05D003360 4.6e-10 69.7 63 58.7
COL.COLO4_32001 Corchorus olitorius HOM05D005889 ORTHO05D007495 4.6e-10 69.7 54 64.8
PSO161G0131 Papaver somniferum HOM05D007469 ORTHO05D003360 6.0e-10 69.3 59 54.2
arahy.Tifrunner.gnm1.ann1.RR2C2G Arachis hypogaea HOM05D007469 ORTHO05D003360 7.9e-10 68.9 90 45.6
Zm00001eb208780 Zea mays HOM05D007469 ORTHO05D003360 1.8e-09 67.8 253 60.9
HPP92_010841 Vanilla planifolia HOM05D007469 ORTHO05D003360 1.5e-08 64.7 258 59.7


User provided reference genes

Program Settings