Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400002182 Solanum tuberosum HOM05D003159 ORTHO05D003780 3.7e-120 435.3 287 100.0
Solyc11g006340.2 Solanum lycopersicum HOM05D003159 ORTHO05D003780 4.5e-33 146.0 77 92.2
PGSC0003DMG400000995 Solanum tuberosum HOM05D003159 ORTHO05D003780 4.5e-33 146.0 77 92.2
Peaxi162Scf00120g00723 Petunia axillaris HOM05D003159 ORTHO05D003780 1.0e-32 144.8 77 90.9
Sopen11g002240 Solanum pennellii HOM05D003159 ORTHO05D003780 1.7e-32 144.1 77 90.9
CAN.G143.64 Capsicum annuum HOM05D003159 ORTHO05D003780 2.2e-32 143.7 77 88.3
Ca_10033_v3 Cicer arietinum L. HOM05D003159 ORTHO05D003780 6.5e-32 142.1 77 85.7
TPR.G26626 Trifolium pratense HOM05D003159 ORTHO05D003780 6.5e-32 142.1 77 85.7
TPR.G33936 Trifolium pratense HOM05D003159 ORTHO05D003780 6.5e-32 142.1 77 85.7
HanXRQChr05g0152861 Helianthus annuus HOM05D003159 ORTHO05D003780 1.1e-31 141.4 77 87.0
Medtr1g080500 Medicago truncatula HOM05D003159 ORTHO05D003780 1.5e-31 141.0 77 84.4
Dinv05722 Davidia involucrata HOM05D003159 ORTHO05D003780 1.9e-31 140.6 77 87.0
Psat6g145160 Pisum sativum HOM05D003159 ORTHO05D003780 2.5e-31 140.2 77 84.4
Glyma.10G163700 Glycine max HOM05D003159 ORTHO05D003780 3.2e-31 139.8 77 84.4
CANSAT54G0311 Cannabis sativa HOM05D003159 ORTHO05D003780 4.2e-31 139.4 74 87.8
Phvul.007G188800 Phaseolus vulgaris HOM05D003159 ORTHO05D003780 4.2e-31 139.4 77 83.1
Glyma.20G226300 Glycine max HOM05D003159 ORTHO05D003780 5.5e-31 139.0 77 83.1
Lj5g0023348 Lotus japonicus HOM05D003159 ORTHO05D003780 5.5e-31 139.0 77 84.4
PGR031G1742 Punica granatum HOM05D003159 ORTHO05D003780 5.5e-31 139.0 77 84.4
RcHm_v2.0_Chr3g0450361 Rosa chinensis HOM05D003159 ORTHO05D003780 5.5e-31 139.0 77 84.4
Lsat_1_v5_gn_9_121981 Lactuca sativa HOM05D003159 ORTHO05D003780 7.2e-31 138.7 77 84.4
BcaC02g07498 Brassica carinata HOM05D003159 ORTHO05D003780 9.4e-31 138.3 77 84.4
A04p28880 Brassica napus HOM05D003159 ORTHO05D003780 9.4e-31 138.3 77 84.4
C04p66140 Brassica napus HOM05D003159 ORTHO05D003780 9.4e-31 138.3 77 84.4
BolC4t28117H Brassica oleracea HOM05D003159 ORTHO05D003780 9.4e-31 138.3 77 84.4
BraA04t18362Z Brassica rapa HOM05D003159 ORTHO05D003780 9.4e-31 138.3 77 84.4
CSS0035771 Camellia sinensis var. sinensis HOM05D003159 ORTHO05D003780 9.4e-31 138.3 73 89.0
SGA_v2.0_scaffold4G01959 Striga asiatica HOM05D003159 ORTHO05D003780 9.4e-31 138.3 79 83.5
THA.LOC104799866 Tarenaya hassleriana HOM05D003159 ORTHO05D003780 9.4e-31 138.3 79 82.3
HanXRQChr04g0112121 Helianthus annuus HOM05D003159 ORTHO05D003780 1.2e-30 137.9 77 83.1
Sabra19G0017400 Salix brachista HOM05D003159 ORTHO05D003780 1.2e-30 137.9 77 83.1
Sabra19G0024900 Salix brachista HOM05D003159 ORTHO05D003780 1.2e-30 137.9 77 83.1
Thecc.05G277700 Theobroma cacao HOM05D003159 ORTHO05D003780 1.2e-30 137.9 77 83.1
TAR362G0530 Trochodendron aralioides HOM05D003159 ORTHO05D003780 1.2e-30 137.9 77 83.1
AUR62033998 Chenopodium quinoa HOM05D003159 ORTHO05D003780 1.6e-30 137.5 77 83.1
Cc02_g09140 Coffea canephora HOM05D003159 ORTHO05D003780 1.6e-30 137.5 77 84.4
ECA248G3699 Erigeron canadensis HOM05D003159 ORTHO05D003780 1.6e-30 137.5 77 83.1
Eucgr.J00270 Eucalyptus grandis HOM05D003159 ORTHO05D003780 1.6e-30 137.5 77 81.8
Gohir.A09G017500 Gossypium hirsutum HOM05D003159 ORTHO05D003780 1.6e-30 137.5 77 83.1
Gohir.A11G250300 Gossypium hirsutum HOM05D003159 ORTHO05D003780 1.6e-30 137.5 77 83.1
Gohir.D11G260700 Gossypium hirsutum HOM05D003159 ORTHO05D003780 1.6e-30 137.5 77 83.1
Gohir.D13G031700 Gossypium hirsutum HOM05D003159 ORTHO05D003780 1.6e-30 137.5 77 83.1
Gorai.007G279300 Gossypium raimondii HOM05D003159 ORTHO05D003780 1.6e-30 137.5 77 83.1
Gorai.013G036100 Gossypium raimondii HOM05D003159 ORTHO05D003780 1.6e-30 137.5 77 83.1
Manes.15G108700 Manihot esculenta HOM05D003159 ORTHO05D003780 1.6e-30 137.5 77 83.1
Hund02191 Selenicereus undatus HOM05D003159 ORTHO05D003780 1.6e-30 137.5 77 84.4
BcaB06g29020 Brassica carinata HOM05D003159 ORTHO05D003780 2.1e-30 137.1 77 83.1
AUR62027480 Chenopodium quinoa HOM05D003159 ORTHO05D003780 2.1e-30 137.1 77 83.1
Thhalv10016367m.g Eutrema salsugineum HOM05D003159 ORTHO05D003780 2.1e-30 137.1 77 83.1
Lalb_Chr21g0311061 Lupinus albus HOM05D003159 ORTHO05D003780 2.1e-30 137.1 79 79.7
MD12G1244300 Malus domestica HOM05D003159 ORTHO05D003780 2.1e-30 137.1 77 83.1
THA.LOC104808027 Tarenaya hassleriana HOM05D003159 ORTHO05D003780 2.1e-30 137.1 79 82.3
DCAR_028953 Daucus carota HOM05D003159 ORTHO05D003780 2.7e-30 136.7 77 85.7
MD04G1227600 Malus domestica HOM05D003159 ORTHO05D003780 2.7e-30 136.7 77 83.1
Nitab4.5_0007901g0030 Nicotiana tabacum HOM05D003159 ORTHO05D003780 2.7e-30 136.7 77 83.1
Potri.013G043500 Populus trichocarpa HOM05D003159 ORTHO05D003780 2.7e-30 136.7 77 81.8
Sp4g20070 Schrenkiella parvula HOM05D003159 ORTHO05D003780 2.7e-30 136.7 77 83.1
Aqoxy6G02795 Aquilegia oxysepala HOM05D003159 ORTHO05D003780 3.6e-30 136.3 79 81.0
CiPaw.08G119500 Carya illinoinensis HOM05D003159 ORTHO05D003780 3.6e-30 136.3 77 83.1
Lalb_Chr06g0168161 Lupinus albus HOM05D003159 ORTHO05D003780 3.6e-30 136.3 77 81.8
Potri.019G012300 Populus trichocarpa HOM05D003159 ORTHO05D003780 3.6e-30 136.3 77 81.8
QL01p030114 Quercus lobata HOM05D003159 ORTHO05D003780 3.6e-30 136.3 77 84.4
QL07p003261 Quercus lobata HOM05D003159 ORTHO05D003780 3.6e-30 136.3 77 84.4
GSVIVG01036258001 Vitis vinifera HOM05D003159 ORTHO05D003780 3.6e-30 136.3 77 81.8
BcaC01g05601 Brassica carinata HOM05D003159 ORTHO05D003780 4.7e-30 136.0 77 81.8
A03p20800 Brassica napus HOM05D003159 ORTHO05D003780 4.7e-30 136.0 77 81.8
BolC3t14843H Brassica oleracea HOM05D003159 ORTHO05D003780 4.7e-30 136.0 77 81.8
BraA03t11320Z Brassica rapa HOM05D003159 ORTHO05D003780 4.7e-30 136.0 77 81.8
CDE11G0603 Ceratophyllum demersum HOM05D003159 ORTHO05D003780 4.7e-30 136.0 77 81.8
DCAR_001864 Daucus carota HOM05D003159 ORTHO05D003780 4.7e-30 136.0 77 84.4
Migut.F01579 Erythranthe guttata HOM05D003159 ORTHO05D003780 4.7e-30 136.0 77 83.1
Ah.09g228380 Amaranthus hybridus HOM05D003159 ORTHO05D003780 6.1e-30 135.6 77 81.8
Duzib128G1665 Durio zibethinus HOM05D003159 ORTHO05D003780 6.1e-30 135.6 77 81.8
MBI12_g21500_MAGBIO Magnolia biondii HOM05D003159 ORTHO05D003780 6.1e-30 135.6 77 80.5
Prupe.6G346800 Prunus persica HOM05D003159 ORTHO05D003780 6.1e-30 135.6 77 81.8
Zm00001eb120570 Zea mays HOM05D003159 ORTHO05D003780 6.1e-30 135.6 77 80.5
arahy.Tifrunner.gnm1.ann1.W48W00 Arachis hypogaea HOM05D003159 ORTHO05D003780 8.0e-30 135.2 77 80.5
BcaB01g03763 Brassica carinata HOM05D003159 ORTHO05D003780 8.0e-30 135.2 77 81.8
C03p24440 Brassica napus HOM05D003159 ORTHO05D003780 8.0e-30 135.2 77 80.5
Haze_04383 Corylus avellana HOM05D003159 ORTHO05D003780 8.0e-30 135.2 73 86.3
vmacro19526 Vaccinium macrocarpon HOM05D003159 ORTHO05D003780 8.0e-30 135.2 77 83.1
Zm00001eb284760 Zea mays HOM05D003159 ORTHO05D003780 8.0e-30 135.2 77 79.2
AT2G37690 Arabidopsis thaliana HOM05D003159 ORTHO05D003780 1.4e-29 134.4 77 81.8
Carub.0004s1964 Capsella rubella HOM05D003159 ORTHO05D003780 1.4e-29 134.4 77 81.8
CARHR131850 Cardamine hirsuta HOM05D003159 ORTHO05D003780 1.4e-29 134.4 77 81.8
FvH4_5g12790 Fragaria vesca HOM05D003159 ORTHO05D003780 1.4e-29 134.4 77 81.8
Lj3C918G0 Lonicera japonica HOM05D003159 ORTHO05D003780 1.4e-29 134.4 77 81.8
SalBow8G0718 Salvia bowleyana HOM05D003159 ORTHO05D003780 1.4e-29 134.4 106 62.3
VMungo0720G2291 Vigna mungo HOM05D003159 ORTHO05D003780 1.4e-29 134.4 77 81.8
Aa31sc70G90 Aethionema arabicum HOM05D003159 ORTHO05D003780 1.8e-29 134.0 77 81.8
Os01g0199900 Oryza sativa ssp. japonica HOM05D003159 ORTHO05D003780 1.8e-29 134.0 77 77.9
TWI81G0941 Tripterygium wilfordii HOM05D003159 ORTHO05D003780 1.8e-29 134.0 74 85.1
vmacro20008 Vaccinium macrocarpon HOM05D003159 ORTHO05D003780 1.8e-29 134.0 77 81.8
EL10Ac8g19239 Beta vulgaris HOM05D003159 ORTHO05D003780 2.3e-29 133.7 77 83.1
Sabra13G0039800 Salix brachista HOM05D003159 ORTHO05D003780 3.0e-29 133.3 77 79.2
Atru.chr2.869 Acer truncatum HOM05D003159 ORTHO05D003780 4.0e-29 132.9 71 85.9
AL4G34620 Arabidopsis lyrata HOM05D003159 ORTHO05D003780 4.0e-29 132.9 77 81.8
Aa31LG8G11740 Aethionema arabicum HOM05D003159 ORTHO05D003780 5.2e-29 132.5 77 80.5
Aqoxy4G01990 Aquilegia oxysepala HOM05D003159 ORTHO05D003780 5.2e-29 132.5 78 79.5
Nn3g19572 Nelumbo nucifera HOM05D003159 ORTHO05D003780 5.2e-29 132.5 77 80.5
Rhsim05G0176200 Rhododendron simsii HOM05D003159 ORTHO05D003780 5.2e-29 132.5 73 84.9
Cpa.g.sc162.3 Carica papaya HOM05D003159 ORTHO05D003780 6.8e-29 132.1 75 81.3
Mapoly0046s0034 Marchantia polymorpha HOM05D003159 ORTHO05D003780 6.8e-29 132.1 77 79.2
Sc06g0010270 Simmondsia chinensis HOM05D003159 ORTHO05D003780 6.8e-29 132.1 74 83.8
ClCG11G008930 Citrullus lanatus HOM05D003159 ORTHO05D003780 8.8e-29 131.7 73 84.9
arahy.Tifrunner.gnm1.ann1.N0IL4Q Arachis hypogaea HOM05D003159 ORTHO05D003780 1.2e-28 131.3 77 79.2
Rhsim01G0186900 Rhododendron simsii HOM05D003159 ORTHO05D003780 1.5e-28 131.0 140 53.6
Sed0018461 Sechium edule HOM05D003159 ORTHO05D003780 1.5e-28 131.0 73 84.9
FAN12G0237 Fragaria x ananassa HOM05D003159 ORTHO05D003780 2.0e-28 130.6 69 87.0
Sabra19G0025800 Salix brachista HOM05D003159 ORTHO05D003780 2.0e-28 130.6 74 83.8
Actinidia06676 Actinidia chinensis HOM05D003159 ORTHO05D003780 3.4e-28 129.8 73 83.6
Hma1.2p1_0345F.1_g131280 Hydrangea macrophylla HOM05D003159 ORTHO05D003780 3.4e-28 129.8 77 80.5
Peaxi162Scf00135g01116 Petunia axillaris HOM05D003159 ORTHO05D003780 4.4e-28 129.4 79 79.7
Rhsim05G0177800 Rhododendron simsii HOM05D003159 ORTHO05D000029 4.4e-28 129.4 74 82.4
Ciclev10027983m.g Citrus clementina HOM05D003159 ORTHO05D003780 5.7e-28 129.0 73 80.8
unitig_22.g5684 Utricularia gibba HOM05D003159 ORTHO05D003780 7.5e-28 128.6 76 77.6
PSO541G5176 Papaver somniferum HOM05D003159 ORTHO05D003780 9.8e-28 128.3 77 77.9
PSO675G5476 Papaver somniferum HOM05D003159 ORTHO05D003780 9.8e-28 128.3 77 77.9
MELO3C008089.2 Cucumis melo HOM05D003159 ORTHO05D003780 1.7e-27 127.5 73 83.6
CsaV3_2G033180 Cucumis sativus L. HOM05D003159 ORTHO05D003780 1.7e-27 127.5 73 83.6
Lalb_Chr06g0166701 Lupinus albus HOM05D003159 ORTHO05D003780 2.8e-27 126.7 74 81.1
Lalb_Chr06g0166731 Lupinus albus HOM05D003159 ORTHO05D003780 2.8e-27 126.7 74 81.1
SEGI_03130 Sequoiadendron giganteum HOM05D003159 ORTHO05D003780 3.7e-27 126.3 73 78.1
SEGI_37742 Sequoiadendron giganteum HOM05D003159 ORTHO05D003780 3.7e-27 126.3 73 78.1
MSTRG.927 Avicennia marina HOM05D003159 ORTHO05D003780 4.8e-27 125.9 77 79.2
HPP92_021777 Vanilla planifolia HOM05D003159 ORTHO05D003780 4.8e-27 125.9 77 75.3
PSO170G0868 Papaver somniferum HOM05D003159 ORTHO05D003780 8.3e-27 125.2 77 76.6
PSO170G3230 Papaver somniferum HOM05D003159 ORTHO05D003780 8.3e-27 125.2 77 76.6
SHI06090 Sapria himalayana HOM05D003159 ORTHO05D003780 8.3e-27 125.2 68 82.4
ATR0111G007 Amborella trichopoda HOM05D003159 ORTHO05D003780 1.8e-26 124.0 77 72.7
FAN08G2202 Fragaria x ananassa HOM05D003159 ORTHO05D003780 2.4e-26 123.6 93 67.7
FAN18G4088 Fragaria x ananassa HOM05D003159 ORTHO05D003780 9.1e-26 121.7 93 66.7
FAN18G4090 Fragaria x ananassa HOM05D003159 ORTHO05D003780 9.1e-26 121.7 93 66.7
Pp3c2_24240 Physcomitrium patens HOM05D003159 ORTHO05D003780 9.1e-26 121.7 72 77.8
SMO270G0125 Selaginella moellendorffii HOM05D003159 ORTHO05D003780 7.7e-25 118.6 79 69.6
QL03p028499 Quercus lobata HOM05D003159 ORTHO05D003780 1.3e-24 117.9 86 69.8
AagrBONN_evm.TU.Sc2ySwM_368.1733 Anthoceros agrestis HOM05D003159 ORTHO05D003780 1.7e-24 117.5 77 70.1
CBR_g8948 Chara braunii HOM05D003159 ORTHO05D003780 2.5e-23 113.6 77 68.8
SMO358G0312 Selaginella moellendorffii HOM05D003159 ORTHO05D003780 2.0e-20 104.0 89 60.7
PRCOL_00005277 Prasinoderma coloniale HOM05D003159 ORTHO05D003780 4.9e-19 99.4 66 69.7
Lsat_1_v5_gn_3_106720 Lactuca sativa HOM05D003159 ORTHO05D003780 8.3e-19 98.6 57 75.4
Nitab4.5_0001781g0080 Nicotiana tabacum HOM05D003159 ORTHO05D003780 4.1e-18 96.3 77 67.5
Cre12.g503300 Chlamydomonas reinhardtii HOM05D003159 ORTHO05D003780 1.6e-17 94.4 69 60.9
MCO10G267 Micromonas commoda HOM05D003159 ORTHO05D003780 2.7e-17 93.6 69 62.3
CSS0018975 Camellia sinensis var. sinensis HOM05D003159 ORTHO05D003780 8.6e-16 88.6 60 71.7
Cfa025150 Carpinus fangiana HOM05D003159 ORTHO05D003780 5.2e-13 79.3 70 58.6
PGSC0003DMG400017215 Solanum tuberosum HOM05D008307 ORTHO05D010374 1.5e-12 77.8 49 79.6
Sopen09g033190 Solanum pennellii HOM05D008307 ORTHO05D010374 2.0e-12 77.4 49 79.6
Solyc09g090290.3 Solanum lycopersicum HOM05D008307 ORTHO05D010374 3.4e-12 76.6 48 81.2
COL.COLO4_15406 Corchorus olitorius HOM05D003159 ORTHO05D003780 2.9e-11 73.6 77 51.9
Haze_27599 Corylus avellana HOM05D003159 ORTHO05D003780 1.1e-10 71.6 106 40.6
PSO782G2873 Papaver somniferum HOM05D003159 ORTHO05D003780 2.4e-10 70.5 42 78.6
FAN11G2158 Fragaria x ananassa HOM05D003159 ORTHO05D003780 1.7e-08 64.3 60 55.0
Sopen01g051190 Solanum pennellii HOM05D008110 ORTHO05D000088 2.3e-08 63.9 48 66.7
CDE05G1140 Ceratophyllum demersum HOM05D003159 ORTHO05D003780 3.3e-07 60.1 35 80.0
CAN.G220.11 Capsicum annuum HOM05D008307 ORTHO05D010374 1.6e-06 57.8 44 68.2


User provided reference genes

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