Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400002087 Solanum tuberosum HOM05D005787 ORTHO05D007011 4.9e-290 1000.3 484 100.0
Solyc02g080320.4 Solanum lycopersicum HOM05D005787 ORTHO05D007011 1.8e-284 981.9 484 97.1
Sopen02g025020 Solanum pennellii HOM05D005787 ORTHO05D007011 9.9e-283 976.1 484 97.3
CAN.G569.24 Capsicum annuum HOM05D005787 ORTHO05D007011 6.3e-261 903.7 484 89.5
Nitab4.5_0003893g0010 Nicotiana tabacum HOM05D005787 ORTHO05D007011 2.9e-250 868.2 482 86.3
Peaxi162Scf00262g00038 Petunia axillaris HOM05D005787 ORTHO05D007011 2.8e-245 851.7 484 85.1
Dinv20032 Davidia involucrata HOM05D005787 ORTHO05D007011 4.1e-212 741.5 489 72.8
Oeu015733.1 Olea europaea HOM05D005787 ORTHO05D007011 1.8e-207 726.1 485 72.4
Cc09_g01960 Coffea canephora HOM05D005787 ORTHO05D007011 4.0e-207 724.9 485 71.1
Thecc.06G217000 Theobroma cacao HOM05D005787 ORTHO05D007011 2.5e-201 705.7 458 74.2
TAR624G0905 Trochodendron aralioides HOM05D005787 ORTHO05D007011 2.1e-200 702.6 487 69.4
Prupe.4G024200 Prunus persica HOM05D005787 ORTHO05D007011 6.2e-200 701.0 485 68.7
Atru.chr10.2171 Acer truncatum HOM05D005787 ORTHO05D007011 3.4e-198 695.3 481 69.0
Haze_06771 Corylus avellana HOM05D005787 ORTHO05D007011 4.4e-198 694.9 450 72.2
Actinidia11846 Actinidia chinensis HOM05D005787 ORTHO05D007011 1.7e-197 693.0 468 71.2
Ciclev10015055m.g Citrus clementina HOM05D005787 ORTHO05D007011 2.9e-197 692.2 480 68.8
QL05p074231 Quercus lobata HOM05D005787 ORTHO05D007011 2.9e-197 692.2 456 72.1
Manes.16G010400 Manihot esculenta HOM05D005787 ORTHO05D007011 1.1e-196 690.3 457 71.1
Potri.004G019100 Populus trichocarpa HOM05D005787 ORTHO05D007011 1.4e-196 689.9 472 69.7
GSVIVG01012651001 Vitis vinifera HOM05D005787 ORTHO05D007011 1.9e-196 689.5 474 70.9
Cpa.g.sc198.22 Carica papaya HOM05D005787 ORTHO05D007011 3.2e-196 688.7 480 68.8
PGR042G0837 Punica granatum HOM05D005787 ORTHO05D007011 6.0e-195 684.5 478 67.6
Migut.H01558 Erythranthe guttata HOM05D005787 ORTHO05D007011 7.8e-195 684.1 485 67.4
Gohir.D05G171800 Gossypium hirsutum HOM05D005787 ORTHO05D007011 1.3e-194 683.3 462 71.4
Lj1C1227T21 Lonicera japonica HOM05D005787 ORTHO05D007011 2.3e-194 682.6 399 77.7
SalBow1G7047 Salvia bowleyana HOM05D005787 ORTHO05D007011 2.3e-194 682.6 485 67.4
Gorai.009G176900 Gossypium raimondii HOM05D005787 ORTHO05D007011 3.0e-194 682.2 462 71.2
Phvul.006G151200 Phaseolus vulgaris HOM05D005787 ORTHO05D007011 1.5e-193 679.9 456 70.4
FvH4_3g02480 Fragaria vesca HOM05D005787 ORTHO05D007011 1.6e-192 676.4 461 69.6
THA.LOC104812988 Tarenaya hassleriana HOM05D005787 ORTHO05D007011 1.6e-192 676.4 458 70.7
VMungo0540G0861 Vigna mungo HOM05D005787 ORTHO05D007011 1.6e-192 676.4 441 72.1
Nn1g07089 Nelumbo nucifera HOM05D005787 ORTHO05D007011 2.1e-192 676.0 484 65.9
FAN25G2524 Fragaria x ananassa HOM05D005787 ORTHO05D007011 2.8e-192 675.6 461 69.2
vmacro15819 Vaccinium macrocarpon HOM05D005787 ORTHO05D007011 6.2e-192 674.5 486 67.5
Rhsim02G0110900 Rhododendron simsii HOM05D005787 ORTHO05D007011 6.8e-191 671.0 483 67.1
Medtr2g022770 Medicago truncatula HOM05D005787 ORTHO05D007011 8.9e-191 670.6 436 70.9
Gohir.A05G168600 Gossypium hirsutum HOM05D005787 ORTHO05D007011 2.0e-190 669.5 473 69.1
PSO541G2671 Papaver somniferum HOM05D005787 ORTHO05D007011 3.4e-190 668.7 478 66.5
Sabra04G0010700 Salix brachista HOM05D005787 ORTHO05D007011 7.5e-190 667.5 393 76.6
TPR.G7642 Trifolium pratense HOM05D005787 ORTHO05D007011 7.5e-190 667.5 435 70.8
Glyma.13G206600 Glycine max HOM05D005787 ORTHO05D007011 2.2e-189 666.0 440 70.7
Eucgr.E04102 Eucalyptus grandis HOM05D005787 ORTHO05D007011 4.9e-189 664.8 422 73.9
Glyma.15G106100 Glycine max HOM05D005787 ORTHO05D007011 6.4e-189 664.5 449 70.2
Lj6g0006260 Lotus japonicus HOM05D005787 ORTHO05D007011 1.1e-188 663.7 451 70.1
CSS0006555 Camellia sinensis var. sinensis HOM05D005787 ORTHO05D007011 5.4e-188 661.4 496 65.5
MD10G1317600 Malus domestica HOM05D005787 ORTHO05D007011 7.1e-188 661.0 393 76.3
CANSAT56G2549 Cannabis sativa HOM05D005787 ORTHO05D007011 9.2e-188 660.6 461 68.3
Psat1g182520 Pisum sativum HOM05D005787 ORTHO05D007011 1.2e-187 660.2 413 72.9
RcHm_v2.0_Chr5g0003731 Rosa chinensis HOM05D005787 ORTHO05D007011 1.2e-187 660.2 455 68.8
Lalb_Chr18g0056211 Lupinus albus HOM05D005787 ORTHO05D007011 1.0e-186 657.1 441 70.5
Aqoxy1G03304 Aquilegia oxysepala HOM05D005787 ORTHO05D007011 8.6e-186 654.1 474 67.3
Aa31LG6G3750 Aethionema arabicum HOM05D005787 ORTHO05D007011 1.5e-185 653.3 471 66.9
Ca_00626_v3 Cicer arietinum L. HOM05D005787 ORTHO05D007011 3.3e-185 652.1 451 67.4
Lj6g0025395 Lotus japonicus HOM05D005787 ORTHO05D007011 5.6e-185 651.4 404 73.5
CsaV3_1G010950 Cucumis sativus L. HOM05D005787 ORTHO05D007011 9.5e-185 650.6 452 67.5
SGA_v2.0_scaffold89G27454 Striga asiatica HOM05D005787 ORTHO05D007011 1.2e-184 650.2 481 65.9
EL10Ac8g20016 Beta vulgaris HOM05D005787 ORTHO05D007011 2.4e-183 646.0 448 67.9
Sed0015393 Sechium edule HOM05D005787 ORTHO05D007011 5.2e-183 644.8 429 70.9
arahy.Tifrunner.gnm1.ann1.J4BAYR Arachis hypogaea HOM05D005787 ORTHO05D007011 2.0e-182 642.9 457 66.5
ClCG03G004890 Citrullus lanatus HOM05D005787 ORTHO05D007011 2.0e-182 642.9 474 66.5
BcaNung02245 Brassica carinata HOM05D005787 ORTHO05D007011 2.6e-182 642.5 474 66.7
BcaC09g51204 Brassica carinata HOM05D005787 ORTHO05D007011 9.9e-182 640.6 472 66.7
A01p13100 Brassica napus HOM05D005787 ORTHO05D007011 2.2e-181 639.4 474 66.7
arahy.Tifrunner.gnm1.ann1.N0U7LY Arachis hypogaea HOM05D005787 ORTHO05D007011 2.9e-181 639.0 458 65.9
C01p15790 Brassica napus HOM05D005787 ORTHO05D007011 2.9e-181 639.0 474 66.7
BolC1t01532H Brassica oleracea HOM05D005787 ORTHO05D007011 2.9e-181 639.0 474 66.7
CARHR228510 Cardamine hirsuta HOM05D005787 ORTHO05D007011 3.8e-181 638.6 479 66.4
Sp7g19940 Schrenkiella parvula HOM05D005787 ORTHO05D007011 3.2e-180 635.6 476 65.8
AT4G21770 Arabidopsis thaliana HOM05D005787 ORTHO05D007011 1.6e-179 633.3 476 65.1
Lalb_Chr18g0056221 Lupinus albus HOM05D005787 ORTHO05D007011 2.1e-179 632.9 431 69.1
Psat0s341g0040 Pisum sativum HOM05D005787 ORTHO05D007011 2.1e-179 632.9 416 70.0
AL7G32160 Arabidopsis lyrata HOM05D005787 ORTHO05D007011 3.5e-179 632.1 478 65.5
BraA01t01253Z Brassica rapa HOM05D005787 ORTHO05D007011 4.6e-179 631.7 474 65.4
HanXRQChr01g0003621 Helianthus annuus HOM05D005787 ORTHO05D007011 1.7e-178 629.8 413 69.0
Lsat_1_v5_gn_1_122000 Lactuca sativa HOM05D005787 ORTHO05D007011 1.7e-178 629.8 484 62.8
AUR62012669 Chenopodium quinoa HOM05D005787 ORTHO05D007011 2.3e-178 629.4 484 62.2
AUR62021985 Chenopodium quinoa HOM05D005787 ORTHO05D007011 3.0e-178 629.0 467 64.0
Thhalv10025093m.g Eutrema salsugineum HOM05D005787 ORTHO05D007011 3.9e-178 628.6 477 64.8
Hund21387 Selenicereus undatus HOM05D005787 ORTHO05D007011 5.1e-178 628.2 421 67.9
Medtr7g113450 Medicago truncatula HOM05D005787 ORTHO05D007011 1.1e-177 627.1 408 70.1
ECA248G2950 Erigeron canadensis HOM05D005787 ORTHO05D007011 1.9e-177 626.3 416 69.2
TPR.G33224 Trifolium pratense HOM05D005787 ORTHO05D007011 1.9e-177 626.3 441 67.3
CsaV3_1G010930 Cucumis sativus L. HOM05D005787 ORTHO05D007011 7.3e-177 624.4 459 65.1
Carub.0007s1963 Capsella rubella HOM05D005787 ORTHO05D007011 1.2e-174 617.1 394 73.1
HanXRQChr05g0138101 Helianthus annuus HOM05D005787 ORTHO05D007011 2.4e-172 609.4 468 61.1
ATR0752G095 Amborella trichopoda HOM05D005787 ORTHO05D007011 9.3e-172 607.4 476 61.1
AUR62012670 Chenopodium quinoa HOM05D005787 ORTHO05D007011 2.7e-171 605.9 397 69.5
DCAR_024937 Daucus carota HOM05D005787 ORTHO05D007011 2.1e-168 596.3 358 76.0
Ah.09g235150 Amaranthus hybridus HOM05D005787 ORTHO05D007011 6.9e-167 591.3 417 66.9
Hund21388 Selenicereus undatus HOM05D005787 ORTHO05D007011 3.4e-166 589.0 384 68.8
Lsat_1_v5_gn_1_128660 Lactuca sativa HOM05D005787 ORTHO05D007011 2.2e-165 586.3 477 61.2
Ah.09g235140 Amaranthus hybridus HOM05D005787 ORTHO05D007011 6.4e-165 584.7 494 57.9
AUR62021984 Chenopodium quinoa HOM05D005787 ORTHO05D007011 1.1e-164 583.9 498 56.8
MD10G1317000 Malus domestica HOM05D005787 ORTHO05D007011 2.4e-164 582.8 428 65.4
MELO3C002471.2 Cucumis melo HOM05D005787 ORTHO05D007011 2.3e-162 576.2 428 65.9
Zm00001eb110780 Zea mays HOM05D005787 ORTHO05D007011 3.0e-162 575.9 475 57.9
MELO3C002473.2 Cucumis melo HOM05D005787 ORTHO05D007011 1.3e-160 570.5 355 74.4
unitig_0.g957 Utricularia gibba HOM05D005787 ORTHO05D007011 1.4e-159 567.0 357 72.0
EL10Ac8g20017 Beta vulgaris HOM05D005787 ORTHO05D007011 2.4e-159 566.2 413 64.6
MBI02_g15259_MAGBIO Magnolia biondii HOM05D005787 ORTHO05D007011 3.8e-157 558.9 490 58.0
HPP92_013307 Vanilla planifolia HOM05D005787 ORTHO05D007011 2.1e-155 553.1 353 68.0
CiPaw.09G089100 Carya illinoinensis HOM05D005787 ORTHO05D007011 2.6e-150 536.2 361 70.9
CiPaw.10G069200 Carya illinoinensis HOM05D005787 ORTHO05D007011 2.6e-150 536.2 397 65.5
Sc05g0009040 Simmondsia chinensis HOM05D005787 ORTHO05D007011 2.3e-146 523.1 394 65.2
ECA248G3226 Erigeron canadensis HOM05D005787 ORTHO05D007011 4.1e-143 512.3 393 62.1
Aqoxy92s001 Aquilegia oxysepala HOM05D005787 ORTHO05D007011 4.4e-129 465.7 439 56.0
Pp3c5_11180 Physcomitrium patens HOM05D005787 ORTHO05D007011 5.9e-126 455.3 400 53.5
Mapoly0146s0040 Marchantia polymorpha HOM05D005787 ORTHO05D007011 1.4e-122 444.1 409 50.6
Mapoly0067s0098 Marchantia polymorpha HOM05D005787 ORTHO05D007011 2.0e-121 440.3 429 50.3
CSS0044707 Camellia sinensis var. sinensis HOM05D005787 ORTHO05D007011 9.7e-121 438.0 311 69.5
SMO200G0166 Selaginella moellendorffii HOM05D005787 ORTHO05D007011 1.8e-114 417.2 404 49.3
CANSAT64G1034 Cannabis sativa HOM05D005787 ORTHO05D007011 3.0e-114 416.4 259 76.1
SMO200G0270 Selaginella moellendorffii HOM05D005787 ORTHO05D007011 1.1e-111 407.9 435 47.4
DCAR_029795 Daucus carota HOM05D005787 ORTHO05D007011 1.1e-100 371.3 305 62.6
SEGI_04414 Sequoiadendron giganteum HOM05D005787 ORTHO05D007011 5.2e-90 335.9 244 62.3
CDE11G0446 Ceratophyllum demersum HOM05D005787 ORTHO05D007011 1.0e-69 268.5 185 61.6
CDE11G0095 Ceratophyllum demersum HOM05D005787 ORTHO05D007011 1.3e-69 268.1 206 64.1
MSTRG.13153 Avicennia marina HOM05D005787 ORTHO05D007011 8.6e-69 265.4 161 72.7
AagrBONN_evm.TU.Sc2ySwM_228.3336 Anthoceros agrestis HOM05D005787 ORTHO05D007011 1.9e-68 264.2 214 57.5
RcHm_v2.0_Chr5g0003761 Rosa chinensis HOM05D005787 ORTHO05D007011 1.7e-64 251.1 215 59.1
SEGI_19902 Sequoiadendron giganteum HOM05D005787 ORTHO05D007011 2.4e-58 230.7 162 64.2
DCAR_029794 Daucus carota HOM05D005787 ORTHO05D007011 3.3e-52 210.3 130 70.0
Hma1.2p1_3055F.1_g332150 Hydrangea macrophylla HOM05D005787 ORTHO05D007011 7.1e-47 192.6 129 66.7
Cre11.g474850 Chlamydomonas reinhardtii HOM05D005787 ORTHO05D007011 6.9e-34 149.4 481 27.7
MCO11G946 Micromonas commoda HOM05D005787 ORTHO05D007011 2.7e-30 137.5 384 29.9
BcaC05g26802 Brassica carinata HOM05D005787 ORTHO05D007011 9.7e-28 129.0 86 72.1
MCO10G204 Micromonas commoda HOM05D005787 ORTHO05D007011 1.6e-22 111.7 346 27.2
PRCOL_00006623 Prasinoderma coloniale HOM05D005787 ORTHO05D007011 5.7e-20 103.2 361 28.8
A09p39340 Brassica napus HOM05D005787 ORTHO05D007011 1.0e-13 82.4 54 75.9
A01p18320 Brassica napus HOM05D005787 ORTHO05D007011 6.7e-13 79.7 80 58.8
Cre10.g462600 Chlamydomonas reinhardtii HOM05D005787 ORTHO05D007011 2.8e-11 74.3 107 40.2
Cre10.g462500 Chlamydomonas reinhardtii HOM05D005787 ORTHO05D007011 9.1e-10 69.3 166 33.1
QL05p074297 Quercus lobata HOM05D000001 ORTHO05D007011 5.9e-09 66.6 55 50.9
C01p29500 Brassica napus HOM05D005787 ORTHO05D042539 2.9e-08 64.3 61 52.5
BolC1t02892H Brassica oleracea HOM05D005787 ORTHO05D042539 2.9e-08 64.3 61 52.5
Os07g0660400 Oryza sativa ssp. japonica HOM05D005787 ORTHO05D007011 2.1e-06 58.2 98 36.7
Rhsim13G0060400 Rhododendron simsii HOM05D001179 ORTHO05D339156 6.1e-06 56.6 46 56.5


User provided reference genes

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