Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400002011 Solanum tuberosum HOM05D004048 ORTHO05D004859 1.0e-199 699.9 355 100.0
Solyc09g007130.3 Solanum lycopersicum HOM05D004048 ORTHO05D004859 2.8e-194 681.8 351 98.0
CAN.G439.29 Capsicum annuum HOM05D004048 ORTHO05D004859 5.7e-187 657.5 355 94.1
Nitab4.5_0000615g0020 Nicotiana tabacum HOM05D004048 ORTHO05D004859 3.5e-184 648.3 354 91.5
Peaxi162Scf00217g00711 Petunia axillaris HOM05D004048 ORTHO05D004859 1.7e-178 629.4 354 90.1
Nitab4.5_0005222g0030 Nicotiana tabacum HOM05D004048 ORTHO05D004859 8.9e-172 607.1 351 87.7
CSS0029554 Camellia sinensis var. sinensis HOM05D004048 ORTHO05D004859 9.2e-169 597.0 353 85.0
CSS0027402 Camellia sinensis var. sinensis HOM05D004048 ORTHO05D004859 3.9e-167 591.7 353 84.4
Dinv32522 Davidia involucrata HOM05D004048 ORTHO05D004859 9.5e-166 587.0 354 83.3
Sopen09g002000 Solanum pennellii HOM05D004048 ORTHO05D004859 1.6e-165 586.3 299 98.7
Lj9C589T5 Lonicera japonica HOM05D004048 ORTHO05D004859 1.2e-163 580.1 327 87.5
TWI23G0617 Tripterygium wilfordii HOM05D004048 ORTHO05D004859 2.0e-163 579.3 343 84.5
Actinidia10075 Actinidia chinensis HOM05D004048 ORTHO05D004859 9.8e-163 577.0 349 81.9
Sp5g01880 Schrenkiella parvula HOM05D004048 ORTHO05D004859 2.2e-162 575.9 329 86.6
Potri.014G090500 Populus trichocarpa HOM05D004048 ORTHO05D004859 6.4e-162 574.3 343 82.8
A07p25550 Brassica napus HOM05D004048 ORTHO05D004859 1.4e-161 573.2 327 85.9
BcaB02g07374 Brassica carinata HOM05D004048 ORTHO05D004859 1.9e-161 572.8 328 85.7
Ciclev10020577m.g Citrus clementina HOM05D004048 ORTHO05D004859 1.9e-161 572.8 345 82.3
Manes.05G029300 Manihot esculenta HOM05D004048 ORTHO05D004859 2.4e-161 572.4 354 80.2
Hund27241 Selenicereus undatus HOM05D004048 ORTHO05D004859 3.2e-161 572.0 354 80.8
vmacro13227 Vaccinium macrocarpon HOM05D004048 ORTHO05D004859 4.1e-161 571.6 329 85.7
BolC6t37921H Brassica oleracea HOM05D004048 ORTHO05D004859 5.4e-161 571.2 327 85.6
BraA07t30196Z Brassica rapa HOM05D004048 ORTHO05D004859 5.4e-161 571.2 327 85.6
COL.COLO4_12778 Corchorus olitorius HOM05D004048 ORTHO05D004859 5.4e-161 571.2 329 84.5
Gohir.D08G043100 Gossypium hirsutum HOM05D004048 ORTHO05D004859 7.0e-161 570.9 323 87.0
MD07G1131200 Malus domestica HOM05D004048 ORTHO05D004859 7.0e-161 570.9 326 86.2
A09p53600 Brassica napus HOM05D004048 ORTHO05D004859 9.2e-161 570.5 349 81.9
BcaC08g45130 Brassica carinata HOM05D004048 ORTHO05D004859 1.2e-160 570.1 327 85.3
AT2G46110 Arabidopsis thaliana HOM05D004048 ORTHO05D004859 1.6e-160 569.7 346 82.1
Migut.B01799 Erythranthe guttata HOM05D004048 ORTHO05D004859 2.7e-160 568.9 327 85.3
C06p27540 Brassica napus HOM05D004048 ORTHO05D004859 3.5e-160 568.5 327 85.3
Thhalv10001521m.g Eutrema salsugineum HOM05D004048 ORTHO05D004859 3.5e-160 568.5 346 81.5
Gorai.004G041700 Gossypium raimondii HOM05D004048 ORTHO05D004859 3.5e-160 568.5 323 86.7
Sp4g28180 Schrenkiella parvula HOM05D004048 ORTHO05D004859 4.6e-160 568.2 346 82.1
THA.LOC104817317 Tarenaya hassleriana HOM05D004048 ORTHO05D004859 4.6e-160 568.2 348 80.7
AL5G43890 Arabidopsis lyrata HOM05D004048 ORTHO05D004859 6.0e-160 567.8 329 84.8
Nn1g01686 Nelumbo nucifera HOM05D004048 ORTHO05D004859 6.0e-160 567.8 336 82.1
Gohir.A08G032200 Gossypium hirsutum HOM05D004048 ORTHO05D004859 7.8e-160 567.4 348 81.3
Sabra14G0065600 Salix brachista HOM05D004048 ORTHO05D004859 1.0e-159 567.0 331 83.4
Cc02_g21240 Coffea canephora HOM05D004048 ORTHO05D004859 1.3e-159 566.6 324 85.8
TAR375G1056 Trochodendron aralioides HOM05D004048 ORTHO05D004859 1.3e-159 566.6 329 84.8
BcaC07g40651 Brassica carinata HOM05D004048 ORTHO05D004859 1.7e-159 566.2 349 81.1
BolC8t51222H Brassica oleracea HOM05D004048 ORTHO05D004859 1.7e-159 566.2 349 81.1
QL04p055532 Quercus lobata HOM05D004048 ORTHO05D004859 1.7e-159 566.2 329 84.5
Thecc.01G352400 Theobroma cacao HOM05D004048 ORTHO05D004859 2.3e-159 565.8 343 82.2
Hma1.2p1_0335F.1_g128890 Hydrangea macrophylla HOM05D004048 ORTHO05D004859 3.0e-159 565.5 323 84.5
C08p36390 Brassica napus HOM05D004048 ORTHO05D004859 3.9e-159 565.1 349 81.1
Aa31LG10G15450 Aethionema arabicum HOM05D004048 ORTHO05D004859 6.6e-159 564.3 329 84.2
Sc01g0003210 Simmondsia chinensis HOM05D004048 ORTHO05D004859 8.6e-159 563.9 331 83.1
BraA09t40782Z Brassica rapa HOM05D004048 ORTHO05D004859 1.1e-158 563.5 349 81.7
Duzib268G0835 Durio zibethinus HOM05D004048 ORTHO05D004859 1.1e-158 563.5 324 85.2
AT3G61530 Arabidopsis thaliana HOM05D004048 ORTHO05D004859 1.9e-158 562.8 329 84.2
Carub.0004s2881 Capsella rubella HOM05D004048 ORTHO05D004859 1.9e-158 562.8 346 80.6
EL10Ac1g00354 Beta vulgaris HOM05D004048 ORTHO05D004859 9.5e-158 560.5 327 83.2
Haze_15565 Corylus avellana HOM05D004048 ORTHO05D004859 9.5e-158 560.5 367 77.4
CiPaw.02G034800 Carya illinoinensis HOM05D004048 ORTHO05D004859 1.2e-157 560.1 350 80.0
Prupe.2G177600 Prunus persica HOM05D004048 ORTHO05D004859 1.2e-157 560.1 354 79.1
SGA_v2.0_scaffold4G02279 Striga asiatica HOM05D004048 ORTHO05D004859 1.6e-157 559.7 357 79.0
Rhsim07G0205800 Rhododendron simsii HOM05D004048 ORTHO05D004859 6.2e-157 557.8 383 74.4
arahy.Tifrunner.gnm1.ann1.9CR96V Arachis hypogaea HOM05D004048 ORTHO05D004859 8.1e-157 557.4 343 80.2
PSO170G0644 Papaver somniferum HOM05D004048 ORTHO05D004859 1.1e-156 557.0 328 82.6
CsaV3_7G025860 Cucumis sativus L. HOM05D004048 ORTHO05D004859 3.1e-156 555.4 345 79.7
arahy.Tifrunner.gnm1.ann1.8BBS1S Arachis hypogaea HOM05D004048 ORTHO05D004859 4.0e-156 555.1 343 79.9
PGR004G0897 Punica granatum HOM05D004048 ORTHO05D004859 4.0e-156 555.1 347 79.3
Gohir.D08G154300 Gossypium hirsutum HOM05D004048 ORTHO05D004859 5.2e-156 554.7 328 82.3
Gorai.004G160400 Gossypium raimondii HOM05D004048 ORTHO05D004859 5.2e-156 554.7 328 82.3
Oeu054354.2 Olea europaea HOM05D004048 ORTHO05D004859 1.2e-155 553.5 372 75.5
DCAR_025214 Daucus carota HOM05D004048 ORTHO05D004859 2.0e-155 552.7 328 83.2
MBI03_g34597_MAGBIO Magnolia biondii HOM05D004048 ORTHO05D004859 2.0e-155 552.7 326 82.8
PSO063G1481 Papaver somniferum HOM05D004048 ORTHO05D004859 4.4e-155 551.6 327 82.0
FvH4_7g15370 Fragaria vesca HOM05D004048 ORTHO05D004859 5.8e-155 551.2 326 83.7
FAN03G0096 Fragaria x ananassa HOM05D004048 ORTHO05D004859 5.8e-155 551.2 326 83.7
Aqoxy5G04084 Aquilegia oxysepala HOM05D004048 ORTHO05D004859 7.5e-155 550.8 328 82.3
FAN06G1753 Fragaria x ananassa HOM05D004048 ORTHO05D004859 7.5e-155 550.8 326 83.7
HanXRQChr17g0562171 Helianthus annuus HOM05D004048 ORTHO05D004859 1.3e-154 550.1 341 79.8
AUR62004413 Chenopodium quinoa HOM05D004048 ORTHO05D004859 2.9e-154 548.9 327 82.6
FAN10G1698 Fragaria x ananassa HOM05D004048 ORTHO05D004859 3.7e-154 548.5 326 83.4
FAN10G3606 Fragaria x ananassa HOM05D004048 ORTHO05D004859 3.7e-154 548.5 326 83.4
Eucgr.B01988 Eucalyptus grandis HOM05D004048 ORTHO05D004859 4.9e-154 548.1 326 81.6
Psat4g156920 Pisum sativum HOM05D004048 ORTHO05D004859 1.4e-153 546.6 328 82.3
RcHm_v2.0_Chr1g0357691 Rosa chinensis HOM05D004048 ORTHO05D004859 2.4e-153 545.8 354 78.2
Carub.0005s2822 Capsella rubella HOM05D004048 ORTHO05D004859 7.1e-153 544.3 326 81.6
Lj1g0027864 Lotus japonicus HOM05D004048 ORTHO05D004859 1.2e-152 543.5 331 80.7
Atru.chr7.1494 Acer truncatum HOM05D004048 ORTHO05D004859 2.1e-152 542.7 330 80.9
arahy.Tifrunner.gnm1.ann1.8G3C0P Arachis hypogaea HOM05D004048 ORTHO05D004859 2.1e-152 542.7 331 80.4
Lalb_Chr17g0338041 Lupinus albus HOM05D004048 ORTHO05D004859 2.7e-152 542.3 354 77.1
CANSAT56G4107 Cannabis sativa HOM05D004048 ORTHO05D004859 7.8e-152 540.8 327 81.3
TPR.G28287 Trifolium pratense HOM05D004048 ORTHO05D004859 1.7e-151 539.7 353 77.6
FAN06G0189 Fragaria x ananassa HOM05D004048 ORTHO05D004859 2.3e-151 539.3 343 79.3
BcaC07g40671 Brassica carinata HOM05D004048 ORTHO05D004859 3.9e-151 538.5 356 77.5
Lj5g0009706 Lotus japonicus HOM05D004048 ORTHO05D004859 8.6e-151 537.3 331 80.4
Duzib138G1147 Durio zibethinus HOM05D004048 ORTHO05D004859 1.9e-150 536.2 382 72.0
Lsat_1_v5_gn_4_35260 Lactuca sativa HOM05D004048 ORTHO05D004859 3.3e-150 535.4 346 77.5
VMungo0331G0386 Vigna mungo HOM05D004048 ORTHO05D004859 3.3e-150 535.4 330 79.4
Medtr8g028555 Medicago truncatula HOM05D004048 ORTHO05D004859 2.1e-149 532.7 336 79.2
HPP92_005267 Vanilla planifolia HOM05D004048 ORTHO05D004859 5.2e-148 528.1 328 78.4
Glyma.07G064600 Glycine max HOM05D004048 ORTHO05D004859 6.8e-148 527.7 330 77.9
TPR.G37181 Trifolium pratense HOM05D004048 ORTHO05D004859 2.6e-147 525.8 354 74.9
MELO3C014805.2 Cucumis melo HOM05D004048 ORTHO05D004859 3.4e-147 525.4 325 78.5
Rhsim07G0010400 Rhododendron simsii HOM05D004048 ORTHO05D004859 4.4e-147 525.0 347 76.9
Ca_03490_v3 Cicer arietinum L. HOM05D004048 ORTHO05D004859 1.7e-146 523.1 379 71.5
RcHm_v2.0_Chr1g0357711 Rosa chinensis HOM05D004048 ORTHO05D004859 3.2e-145 518.8 329 76.3
AUR62022619 Chenopodium quinoa HOM05D004048 ORTHO05D004859 9.2e-145 517.3 301 84.1
MELO3C012767.2 Cucumis melo HOM05D004048 ORTHO05D004859 3.9e-143 511.9 405 66.2
Rhsim07G0206900 Rhododendron simsii HOM05D004048 ORTHO05D004859 4.0e-140 501.9 400 67.0
SEGI_12250 Sequoiadendron giganteum HOM05D004048 ORTHO05D004859 1.2e-139 500.4 325 72.6
CARHR107270 Cardamine hirsuta HOM05D004048 ORTHO05D004859 5.8e-139 498.0 329 77.2
unitig_60.g25627 Utricularia gibba HOM05D004048 ORTHO05D004859 2.4e-137 492.7 338 72.5
ClCG09G009090 Citrullus lanatus HOM05D004048 ORTHO05D004859 5.4e-137 491.5 325 75.1
Ah.05g180160 Amaranthus hybridus HOM05D004048 ORTHO05D004859 2.3e-135 486.1 330 73.3
Phvul.010G104900 Phaseolus vulgaris HOM05D004048 ORTHO05D004859 6.6e-135 484.6 289 82.4
FvH4_7g15371 Fragaria vesca HOM05D004048 ORTHO05D004859 2.8e-133 479.2 357 68.1
Pp3c7_220 Physcomitrium patens HOM05D004048 ORTHO05D004859 1.4e-129 466.8 328 68.0
GSVIVG01026967001 Vitis vinifera HOM05D004048 ORTHO05D004859 5.4e-129 464.9 260 88.8
Cpa.g.sc11.73 Carica papaya HOM05D004048 ORTHO05D004859 9.3e-129 464.2 331 72.5
Mapoly0035s0043 Marchantia polymorpha HOM05D004048 ORTHO05D004859 1.6e-128 463.4 322 69.6
SMO144G0210 Selaginella moellendorffii HOM05D004048 ORTHO05D004859 2.8e-125 452.6 324 67.0
AagrBONN_evm.TU.Sc2ySwM_117.1042 Anthoceros agrestis HOM05D004048 ORTHO05D004859 1.2e-123 447.2 324 66.7
AagrBONN_evm.TU.Sc2ySwM_117.2358 Anthoceros agrestis HOM05D004048 ORTHO05D004859 3.4e-123 445.7 324 66.4
Os01g0225500 Oryza sativa ssp. japonica HOM05D004048 ORTHO05D004859 4.5e-123 445.3 302 71.9
Glyma.09G254700 Glycine max HOM05D004048 ORTHO05D004859 9.9e-123 444.1 307 72.0
ECA234G0147 Erigeron canadensis HOM05D004048 ORTHO05D004859 3.2e-121 439.1 286 78.7
MCO13G154 Micromonas commoda HOM05D004048 ORTHO05D004859 2.1e-120 436.4 317 66.2
Gohir.A08G133000 Gossypium hirsutum HOM05D004048 ORTHO05D004859 3.5e-120 435.6 260 82.7
FAN10G3616 Fragaria x ananassa HOM05D004048 ORTHO05D004859 1.9e-118 429.9 364 62.4
Cre12.g508550 Chlamydomonas reinhardtii HOM05D004048 ORTHO05D004859 2.1e-117 426.4 325 62.5
BcaC07g42671 Brassica carinata HOM05D004048 ORTHO05D004859 1.1e-113 414.1 328 67.1
CBR_g45417 Chara braunii HOM05D004048 ORTHO05D004859 1.6e-112 410.2 307 62.9
CDE11G0110 Ceratophyllum demersum HOM05D004048 ORTHO05D004859 4.6e-112 408.7 245 82.4
Nn6g32447 Nelumbo nucifera HOM05D004048 ORTHO05D004859 7.9e-112 407.9 328 64.6
Medtr4g037305 Medicago truncatula HOM05D004048 ORTHO05D004859 2.5e-110 402.9 243 82.3
SMO356G0035 Selaginella moellendorffii HOM05D004048 ORTHO05D004859 6.9e-108 394.8 300 64.3
Zm00001eb339000 Zea mays HOM05D004048 ORTHO05D004859 1.5e-107 393.7 240 81.7
ATR0751G082 Amborella trichopoda HOM05D004048 ORTHO05D004859 2.2e-106 389.8 238 79.8
SMO119G0299 Selaginella moellendorffii HOM05D004048 ORTHO05D004859 3.8e-106 389.0 273 68.1
FAN06G1997 Fragaria x ananassa HOM05D004048 ORTHO05D004859 6.1e-104 381.7 367 56.1
FAN06G4041 Fragaria x ananassa HOM05D004048 ORTHO05D004859 2.4e-100 369.8 295 64.7
SEGI_21771 Sequoiadendron giganteum HOM05D004048 ORTHO05D004859 3.1e-100 369.4 238 74.8
Eucgr.B01984 Eucalyptus grandis HOM05D004048 ORTHO05D004859 1.2e-99 367.5 354 57.6
FAN10G1509 Fragaria x ananassa HOM05D004048 ORTHO05D004859 5.9e-99 365.2 244 75.8
PRCOL_00005166 Prasinoderma coloniale HOM05D004048 ORTHO05D004859 7.2e-97 358.2 320 56.2
ATR0751G137 Amborella trichopoda HOM05D004048 ORTHO05D004859 1.6e-96 357.1 233 73.8
AL4G45340 Arabidopsis lyrata HOM05D004048 ORTHO05D004859 9.4e-89 331.3 199 83.9
Eucgr.B01986 Eucalyptus grandis HOM05D004048 ORTHO05D004859 5.3e-76 288.9 286 58.0
Medtr4g037245 Medicago truncatula HOM05D004048 ORTHO05D004859 3.8e-74 282.7 203 73.4
PGSC0003DMG400018716 Solanum tuberosum HOM05D004048 ORTHO05D004859 3.5e-67 259.6 139 94.2
Cfa001640 Carpinus fangiana HOM05D004048 ORTHO05D004859 3.0e-63 246.5 271 49.1
SEGI_25526 Sequoiadendron giganteum HOM05D004048 ORTHO05D004859 5.4e-60 235.7 161 68.3
arahy.Tifrunner.gnm1.ann1.CIF5FW Arachis hypogaea HOM05D004048 ORTHO05D004859 1.5e-57 227.6 155 69.7
TPR.G28294 Trifolium pratense HOM05D004048 ORTHO05D004859 4.0e-55 219.5 253 53.4
Os01g0225400 Oryza sativa ssp. japonica HOM05D004048 ORTHO05D004859 2.0e-54 217.2 129 81.4
Cfa003872 Carpinus fangiana HOM05D004048 ORTHO05D004859 1.6e-51 207.6 352 41.8
SHI16536 Sapria himalayana HOM05D004048 ORTHO05D004859 8.9e-47 191.8 113 80.5
Haze_27487 Corylus avellana HOM05D004048 ORTHO05D004859 3.7e-45 186.4 233 39.9
CAN.G439.28 Capsicum annuum HOM05D004048 ORTHO05D004859 1.6e-40 171.0 90 90.0
Haze_26957 Corylus avellana HOM05D005470 ORTHO05D006855 2.1e-40 170.6 208 45.7
MBI17_g16531_MAGBIO Magnolia biondii HOM05D004048 ORTHO05D004859 4.0e-39 166.4 104 76.0
Lj6g0001313 Lotus japonicus HOM05D004048 ORTHO05D004859 9.9e-38 161.8 100 73.0
FAN01G2460 Fragaria x ananassa HOM05D004048 ORTHO05D004859 2.2e-37 160.6 92 82.6
Medtr4g037315 Medicago truncatula HOM05D004048 ORTHO05D004859 2.1e-35 154.1 98 73.5
MBI12_g43904_MAGBIO Magnolia biondii HOM05D004048 ORTHO05D004859 3.9e-34 149.8 96 80.2
Ca_03489_v3 Cicer arietinum L. HOM05D004048 ORTHO05D004859 3.6e-32 143.3 110 70.9
Medtr4g037275 Medicago truncatula HOM05D004048 ORTHO05D004859 9.9e-30 135.2 76 84.2
arahy.Tifrunner.gnm1.ann1.63JPLQ Arachis hypogaea HOM05D004048 ORTHO05D004859 6.4e-29 132.5 85 70.6
Actinidia20163 Actinidia chinensis HOM05D004048 ORTHO05D004859 5.4e-28 129.4 189 48.1
arahy.Tifrunner.gnm1.ann1.DMYH1R Arachis hypogaea HOM05D004048 ORTHO05D004859 3.8e-21 106.7 76 65.8
SGA_v2.0_scaffold4G02383 Striga asiatica HOM05D004048 ORTHO05D051375 3.2e-20 103.6 63 85.7
AL4G45350 Arabidopsis lyrata HOM05D004048 ORTHO05D038698 5.4e-20 102.8 75 64.0
ATR0751G274 Amborella trichopoda HOM05D004048 ORTHO05D004859 7.1e-20 102.4 73 60.3
Potri.002G164601 Populus trichocarpa HOM05D004048 ORTHO05D004859 1.6e-19 101.3 76 61.8
HanXRQChr15g0474641 Helianthus annuus HOM05D004048 ORTHO05D004859 3.9e-18 96.7 62 79.0
FAN10G2371 Fragaria x ananassa HOM05D004048 ORTHO05D038698 5.6e-17 92.8 73 58.9
DCAR_025216 Daucus carota HOM05D003118 ORTHO05D003618 1.1e-15 88.6 78 66.7
arahy.Tifrunner.gnm1.ann1.GKUV9U Arachis hypogaea HOM05D004048 ORTHO05D004859 2.4e-07 60.8 50 60.0


User provided reference genes

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