Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400001195 Solanum tuberosum HOM05D007833 ORTHO05D009855 2.8e-32 141.4 73 100.0
Nitab4.5_0001028g0100 Nicotiana tabacum HOM05D007833 ORTHO05D009855 4.9e-24 114.0 73 82.2
Nitab4.5_0014943g0010 Nicotiana tabacum HOM05D007833 ORTHO05D009855 4.5e-22 107.5 73 80.8
Nitab4.5_0000759g0080 Nicotiana tabacum HOM05D007833 ORTHO05D009855 9.8e-17 89.7 74 66.2
Nitab4.5_0008797g0010 Nicotiana tabacum HOM05D007833 ORTHO05D009855 2.2e-16 88.6 74 66.2
Hma1.2p1_0628F.1_g192040 Hydrangea macrophylla HOM05D007833 ORTHO05D009855 6.3e-16 87.0 69 65.2
Sopen06g035690 Solanum pennellii HOM05D007833 ORTHO05D009855 8.3e-16 86.7 68 66.2
PGSC0003DMG400020049 Solanum tuberosum HOM05D007833 ORTHO05D009855 5.4e-15 84.0 70 62.9
Peaxi162Scf00570g00076 Petunia axillaris HOM05D007833 ORTHO05D009855 1.2e-14 82.8 72 62.5
CSS0012022 Camellia sinensis var. sinensis HOM05D007833 ORTHO05D009855 4.6e-14 80.9 59 74.6
CAN.G1682.20 Capsicum annuum HOM05D007833 ORTHO05D009855 5.9e-14 80.5 76 57.9
Solyc06g084300.1 Solanum lycopersicum HOM05D007833 ORTHO05D009855 7.8e-14 80.1 68 63.2
Actinidia00743 Actinidia chinensis HOM05D002055 ORTHO05D002120 1.0e-13 79.7 61 67.2
Oeu028084.1 Olea europaea HOM05D007833 ORTHO05D009855 5.0e-13 77.4 69 59.4
Rhsim13G0023900 Rhododendron simsii HOM05D007833 ORTHO05D009855 5.0e-13 77.4 48 79.2
MD11G1287600 Malus domestica HOM05D007833 ORTHO05D009855 8.6e-13 76.6 52 71.2
Aqoxy6G00608 Aquilegia oxysepala HOM05D007833 ORTHO05D009855 2.5e-12 75.1 61 65.6
vmacro02562 Vaccinium macrocarpon HOM05D007833 ORTHO05D009855 2.5e-12 75.1 48 79.2
RcHm_v2.0_Chr6g0291241 Rosa chinensis HOM05D007833 ORTHO05D009855 3.3e-12 74.7 50 70.0
AUR62036454 Chenopodium quinoa HOM05D007833 ORTHO05D009855 5.6e-12 73.9 51 68.6
FAN20G1309 Fragaria x ananassa HOM05D007833 ORTHO05D009855 1.2e-11 72.8 66 59.1
COL.COLO4_09117 Corchorus olitorius HOM05D003232 ORTHO05D003584 1.6e-11 72.4 52 67.3
ECA247G0823 Erigeron canadensis HOM05D007833 ORTHO05D009855 1.6e-11 72.4 60 65.0
Atru.chr5.1399 Acer truncatum HOM05D007833 ORTHO05D009855 2.1e-11 72.0 65 58.5
Nn1g02183 Nelumbo nucifera HOM05D007833 ORTHO05D009855 2.1e-11 72.0 48 75.0
Cc01_g19620 Coffea canephora HOM05D007833 ORTHO05D009855 2.8e-11 71.6 49 71.4
Thecc.01G281600 Theobroma cacao HOM05D007833 ORTHO05D009855 2.8e-11 71.6 50 70.0
MBI04_g33966_MAGBIO Magnolia biondii HOM05D007833 ORTHO05D009855 3.6e-11 71.2 57 61.4
Duzib133G1414 Durio zibethinus HOM05D007833 ORTHO05D009855 4.7e-11 70.9 50 68.0
FvH4_2g23750 Fragaria vesca HOM05D007833 ORTHO05D009855 4.7e-11 70.9 64 59.4
FAN24G2170 Fragaria x ananassa HOM05D007833 ORTHO05D009855 4.7e-11 70.9 64 59.4
Potri.005G208100 Populus trichocarpa HOM05D007833 ORTHO05D009855 4.7e-11 70.9 53 67.9
BcaC06g32911 Brassica carinata HOM05D007833 ORTHO05D009855 6.1e-11 70.5 52 65.4
BcaC06g33387 Brassica carinata HOM05D007833 ORTHO05D009855 6.1e-11 70.5 52 65.4
C07p46950 Brassica napus HOM05D000938 ORTHO05D001451 6.1e-11 70.5 52 65.4
BolC7t45211H Brassica oleracea HOM05D000938 ORTHO05D001451 6.1e-11 70.5 52 65.4
Haze_04727 Corylus avellana HOM05D001305 ORTHO05D007147 8.0e-11 70.1 51 66.7
Dinv11245 Davidia involucrata HOM05D003232 ORTHO05D003584 8.0e-11 70.1 59 61.0
Eucgr.K03378 Eucalyptus grandis HOM05D007833 ORTHO05D009855 8.0e-11 70.1 55 65.5
QL12p022146 Quercus lobata HOM05D007833 ORTHO05D009855 1.0e-10 69.7 50 68.0
TAR365G0564 Trochodendron aralioides HOM05D007833 ORTHO05D009855 1.0e-10 69.7 68 57.4
EL10Ac7g17570 Beta vulgaris HOM05D007833 ORTHO05D009855 1.4e-10 69.3 51 68.6
CANSAT25G0416 Cannabis sativa HOM05D007833 ORTHO05D009855 1.4e-10 69.3 51 64.7
MD03G1267100 Malus domestica HOM05D007833 ORTHO05D009855 1.4e-10 69.3 62 61.3
Sc24g0003060 Simmondsia chinensis HOM05D007833 ORTHO05D009855 1.4e-10 69.3 49 67.3
Manes.01G208800 Manihot esculenta HOM05D007833 ORTHO05D009855 1.8e-10 68.9 51 66.7
TWI59G0429 Tripterygium wilfordii HOM05D007833 ORTHO05D009855 1.8e-10 68.9 52 67.3
Ah.04g166580 Amaranthus hybridus HOM05D007833 ORTHO05D009855 2.3e-10 68.6 50 66.0
A03p48860 Brassica napus HOM05D000938 ORTHO05D001451 2.3e-10 68.6 52 63.5
BraA03t13987Z Brassica rapa HOM05D000938 ORTHO05D001451 2.3e-10 68.6 52 63.5
Peaxi162Scf00783g00321 Petunia axillaris HOM05D007833 ORTHO05D009855 2.3e-10 68.6 63 66.7
Prupe.8G242800 Prunus persica HOM05D007833 ORTHO05D009855 2.3e-10 68.6 52 63.5
Sp5g09880 Schrenkiella parvula HOM05D007833 ORTHO05D009855 2.3e-10 68.6 52 63.5
Sed0020364 Sechium edule HOM05D007833 ORTHO05D009855 3.1e-10 68.2 48 66.7
AUR62017101 Chenopodium quinoa HOM05D007833 ORTHO05D009855 4.0e-10 67.8 50 64.0
Gorai.004G081500 Gossypium raimondii HOM05D007833 ORTHO05D009855 4.0e-10 67.8 52 63.5
Nn4g26217 Nelumbo nucifera HOM05D007833 ORTHO05D009855 4.0e-10 67.8 51 64.7
Cfa006126 Carpinus fangiana HOM05D007833 ORTHO05D009855 6.8e-10 67.0 51 64.7
Ciclev10023167m.g Citrus clementina HOM05D007833 ORTHO05D009855 6.8e-10 67.0 44 72.7
Duzib138G0003 Durio zibethinus HOM05D007833 ORTHO05D009855 6.8e-10 67.0 46 69.6
Gohir.D08G076800 Gossypium hirsutum HOM05D007833 ORTHO05D009855 6.8e-10 67.0 52 63.5
Carub.0005s1877 Capsella rubella HOM05D007833 ORTHO05D009855 1.2e-09 66.2 63 55.6
CARHR162190 Cardamine hirsuta HOM05D007833 ORTHO05D009855 1.2e-09 66.2 50 62.0
CiPaw.07G092800 Carya illinoinensis HOM05D007833 ORTHO05D009855 1.2e-09 66.2 52 63.5
Gohir.A08G068400 Gossypium hirsutum HOM05D007833 ORTHO05D009855 1.2e-09 66.2 52 61.5
Potri.002G054700 Populus trichocarpa HOM05D007833 ORTHO05D009855 1.5e-09 65.9 46 71.7
AT3G52420 Arabidopsis thaliana HOM05D007833 ORTHO05D009855 2.0e-09 65.5 52 59.6
ClCG07G000180 Citrullus lanatus HOM05D007833 ORTHO05D009855 2.0e-09 65.5 54 63.0
Glyma.19G154700 Glycine max HOM05D007833 ORTHO05D009855 2.0e-09 65.5 44 72.7
Lsat_1_v5_gn_9_4081 Lactuca sativa HOM05D007833 ORTHO05D009855 2.0e-09 65.5 69 55.1
AL5G33070 Arabidopsis lyrata HOM05D007833 ORTHO05D009855 4.4e-09 64.3 52 59.6
Cpa.g.sc52.17 Carica papaya HOM05D007833 ORTHO05D009855 5.8e-09 63.9 50 62.0
Ca_08575_v3 Cicer arietinum L. HOM05D007833 ORTHO05D009855 7.5e-09 63.5 51 62.7
CsaV3_6G037060 Cucumis sativus L. HOM05D007833 ORTHO05D009855 9.8e-09 63.2 61 55.7
Phvul.001G149800 Phaseolus vulgaris HOM05D007833 ORTHO05D009855 1.3e-08 62.8 63 57.1
Glyma.17G209300 Glycine max HOM05D007833 ORTHO05D009855 2.2e-08 62.0 44 68.2
Glyma.03G152200 Glycine max HOM05D007833 ORTHO05D009855 2.9e-08 61.6 44 68.2
arahy.Tifrunner.gnm1.ann1.1H9ESI Arachis hypogaea HOM05D007833 ORTHO05D009855 6.4e-08 60.5 51 60.8
Lj1g0020293 Lotus japonicus HOM05D007833 ORTHO05D009855 6.4e-08 60.5 43 67.4
Psat3g064960 Pisum sativum HOM05D007833 ORTHO05D009855 1.4e-07 59.3 48 60.4
Thhalv10010886m.g Eutrema salsugineum HOM05D007833 ORTHO05D009855 3.2e-07 58.2 45 62.2
Medtr7g094710 Medicago truncatula HOM05D007833 ORTHO05D009855 3.2e-07 58.2 43 65.1
Potri.017G127350 Populus trichocarpa HOM05D007833 ORTHO05D009855 4.1e-07 57.8 42 69.0
PGR044G2487 Punica granatum HOM05D007833 ORTHO05D009855 5.4e-07 57.4 37 70.3
Migut.N02161 Erythranthe guttata HOM05D007833 ORTHO05D009855 1.2e-06 56.2 44 61.4
TPR.G26603 Trifolium pratense HOM05D007833 ORTHO05D009855 1.2e-06 56.2 43 62.8
HPP92_007464 Vanilla planifolia HOM05D027844 ORTHO05D009855 2.0e-06 55.5 51 52.9
Os02g0715400 Oryza sativa ssp. japonica HOM05D027844 ORTHO05D037205 4.6e-06 54.3 51 51.0
CiPaw.01G161200 Carya illinoinensis HOM05D008368 ORTHO05D010489 6.0e-06 53.9 46 56.5


User provided reference genes

Program Settings