Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400001190 Solanum tuberosum HOM05D004772 ORTHO05D006892 0.0e+00 1140.2 621 100.0
Sopen01g026980 Solanum pennellii HOM05D004772 ORTHO05D006892 0.0e+00 1115.1 621 95.5
Solyc01g065580.4 Solanum lycopersicum HOM05D004772 ORTHO05D006892 0.0e+00 1114.4 621 95.3
CAN.G14.7 Capsicum annuum HOM05D004772 ORTHO05D006892 1.7e-287 992.3 632 85.9
Nitab4.5_0007304g0010 Nicotiana tabacum HOM05D004772 ORTHO05D006892 1.8e-284 982.2 633 84.8
Peaxi162Scf00065g01018 Petunia axillaris HOM05D004772 ORTHO05D006892 8.9e-268 926.8 642 82.2
Nitab4.5_0000361g0050 Nicotiana tabacum HOM05D004772 ORTHO05D006892 5.6e-238 827.8 510 85.5
Cc03_g01340 Coffea canephora HOM05D004772 ORTHO05D006892 1.9e-222 776.2 646 66.7
MSTRG.24809 Avicennia marina HOM05D004772 ORTHO05D006892 1.1e-212 743.8 652 63.7
Migut.N00065 Erythranthe guttata HOM05D004772 ORTHO05D006892 2.6e-211 739.2 654 63.5
Actinidia18636 Actinidia chinensis HOM05D004772 ORTHO05D006892 2.9e-210 735.7 645 62.8
SGA_v2.0_scaffold119G32697 Striga asiatica HOM05D004772 ORTHO05D006892 2.9e-210 735.7 612 64.5
Lj4g0015807 Lotus japonicus HOM05D004772 ORTHO05D006892 1.9e-209 733.0 627 64.3
GSVIVG01035090001 Vitis vinifera HOM05D004772 ORTHO05D006892 3.2e-209 732.3 657 63.8
HanXRQChr03g0085471 Helianthus annuus HOM05D004772 ORTHO05D006892 1.9e-206 723.0 552 68.7
ECA240G4356 Erigeron canadensis HOM05D004772 ORTHO05D006892 3.3e-206 722.2 623 63.1
Hma1.2p1_0078F.1_g040280 Hydrangea macrophylla HOM05D004772 ORTHO05D006892 3.3e-206 722.2 644 62.6
PGR004G0606 Punica granatum HOM05D004772 ORTHO05D006892 8.2e-205 717.6 639 61.8
TAR362G0678 Trochodendron aralioides HOM05D004772 ORTHO05D006892 9.0e-204 714.1 637 62.2
VMungo1215G3292 Vigna mungo HOM05D004772 ORTHO05D006892 2.6e-203 712.6 636 61.9
Lsat_1_v5_gn_6_76160 Lactuca sativa HOM05D004772 ORTHO05D006892 3.4e-203 712.2 649 62.2
Dinv29709 Davidia involucrata HOM05D004772 ORTHO05D006892 5.8e-203 711.4 653 61.6
Phvul.003G108600 Phaseolus vulgaris HOM05D004772 ORTHO05D006892 7.6e-203 711.1 635 62.2
Potri.008G211400 Populus trichocarpa HOM05D004772 ORTHO05D006892 1.3e-202 710.3 652 61.7
TWI09G0846 Tripterygium wilfordii HOM05D004772 ORTHO05D006892 2.9e-202 709.1 654 60.1
Gorai.006G077200 Gossypium raimondii HOM05D004772 ORTHO05D006892 8.4e-202 707.6 673 60.5
MD13G1162200 Malus domestica HOM05D004772 ORTHO05D006892 1.1e-201 707.2 647 61.4
Eucgr.E01101 Eucalyptus grandis HOM05D004772 ORTHO05D006892 1.9e-201 706.4 636 60.8
Gohir.A09G063500 Gossypium hirsutum HOM05D004772 ORTHO05D006892 3.2e-201 705.7 673 60.3
Gohir.D09G062400 Gossypium hirsutum HOM05D004772 ORTHO05D006892 5.5e-201 704.9 673 60.3
CiPaw.02G079000 Carya illinoinensis HOM05D004772 ORTHO05D006892 7.1e-201 704.5 647 61.5
Prupe.1G129500 Prunus persica HOM05D004772 ORTHO05D006892 7.1e-201 704.5 651 61.3
Potri.010G005600 Populus trichocarpa HOM05D004772 ORTHO05D006892 9.3e-201 704.1 648 62.3
Ca_21472_v3 Cicer arietinum L. HOM05D004772 ORTHO05D006892 1.2e-200 703.7 638 62.4
Glyma.07G244300 Glycine max HOM05D004772 ORTHO05D006892 2.7e-200 702.6 638 62.2
Medtr4g120470 Medicago truncatula HOM05D004772 ORTHO05D006892 2.7e-200 702.6 636 61.9
MD16G1162000 Malus domestica HOM05D004772 ORTHO05D006892 4.6e-200 701.8 602 63.0
Thecc.04G291000 Theobroma cacao HOM05D004772 ORTHO05D006892 6.0e-200 701.4 656 60.2
Glyma.17G029600 Glycine max HOM05D004772 ORTHO05D006892 1.3e-199 700.3 638 61.3
Nn3g21575 Nelumbo nucifera HOM05D004772 ORTHO05D006892 3.9e-199 698.7 657 61.0
TWI73G1272 Tripterygium wilfordii HOM05D004772 ORTHO05D006892 1.5e-198 696.8 650 59.4
DCAR_027042 Daucus carota HOM05D004772 ORTHO05D006892 1.9e-198 696.4 655 59.4
RcHm_v2.0_Chr4g0423801 Rosa chinensis HOM05D004772 ORTHO05D006892 9.7e-198 694.1 658 59.0
Cpa.g.sc9.115 Carica papaya HOM05D004772 ORTHO05D006892 2.2e-197 693.0 643 60.5
FvH4_4g18900 Fragaria vesca HOM05D004772 ORTHO05D006892 1.1e-196 690.6 659 59.0
TPR.G22770 Trifolium pratense HOM05D004772 ORTHO05D006892 1.1e-196 690.6 575 64.7
PSO731G0023 Papaver somniferum HOM05D004772 ORTHO05D006892 4.1e-196 688.7 629 60.9
CsaV3_6G022660 Cucumis sativus L. HOM05D004772 ORTHO05D006892 2.6e-195 686.0 637 60.3
MELO3C021296.2 Cucumis melo HOM05D004772 ORTHO05D006892 1.3e-194 683.7 657 58.8
PSO764G0237 Papaver somniferum HOM05D004772 ORTHO05D006892 1.3e-194 683.7 645 60.5
QL06p010892 Quercus lobata HOM05D004772 ORTHO05D006892 1.3e-194 683.7 653 60.5
Sed0023608 Sechium edule HOM05D004772 ORTHO05D006892 1.3e-194 683.7 639 59.9
CANSAT78G1075 Cannabis sativa HOM05D004772 ORTHO05D006892 3.8e-194 682.2 648 58.8
Lj6A683G52 Lonicera japonica HOM05D004772 ORTHO05D006892 3.8e-194 682.2 656 59.6
Sc19g0003370 Simmondsia chinensis HOM05D004772 ORTHO05D006892 3.8e-194 682.2 621 60.5
Sabra10G0004800 Salix brachista HOM05D004772 ORTHO05D006892 1.4e-193 680.2 679 58.5
Lalb_Chr13g0298261 Lupinus albus HOM05D004772 ORTHO05D006892 2.5e-193 679.5 578 63.0
FAN12G2191 Fragaria x ananassa HOM05D004772 ORTHO05D006892 3.2e-193 679.1 678 57.4
Manes.03G200000 Manihot esculenta HOM05D004772 ORTHO05D006892 3.2e-193 679.1 632 60.6
FAN07G2363 Fragaria x ananassa HOM05D004772 ORTHO05D006892 7.2e-193 677.9 680 57.2
FAN12G3151 Fragaria x ananassa HOM05D004772 ORTHO05D006892 1.2e-192 677.2 678 57.4
Rhsim04G0228200 Rhododendron simsii HOM05D004772 ORTHO05D006892 1.2e-192 677.2 647 60.9
Oeu054008.1 Olea europaea HOM05D004772 ORTHO05D006892 7.9e-192 674.5 539 65.3
Cfa015449 Carpinus fangiana HOM05D004772 ORTHO05D006892 5.1e-191 671.8 640 58.9
Thhalv10020259m.g Eutrema salsugineum HOM05D004772 ORTHO05D006892 2.5e-190 669.5 642 59.0
Aqoxy5G00804 Aquilegia oxysepala HOM05D004772 ORTHO05D006892 3.3e-190 669.1 635 60.2
THA.LOC104802592 Tarenaya hassleriana HOM05D004772 ORTHO05D006892 3.1e-188 662.5 553 62.9
C05p49530 Brassica napus HOM05D004772 ORTHO05D006892 5.3e-188 661.8 646 57.4
BolC5t33706H Brassica oleracea HOM05D004772 ORTHO05D006892 1.2e-187 660.6 646 57.7
ClCG06G004870 Citrullus lanatus HOM05D004772 ORTHO05D006892 2.6e-187 659.4 679 56.6
BraA05t22104Z Brassica rapa HOM05D004772 ORTHO05D006892 3.4e-187 659.1 650 56.8
SalBow5G3355 Salvia bowleyana HOM05D004772 ORTHO05D006892 5.9e-187 658.3 641 60.1
A05p32820 Brassica napus HOM05D004772 ORTHO05D006892 7.7e-187 657.9 635 57.3
BcaC05g28847 Brassica carinata HOM05D004772 ORTHO05D006892 1.0e-186 657.5 646 57.3
Carub.0003s1652 Capsella rubella HOM05D004772 ORTHO05D006892 6.5e-186 654.8 624 57.5
arahy.Tifrunner.gnm1.ann1.0U01EG Arachis hypogaea HOM05D004772 ORTHO05D006892 3.2e-185 652.5 640 58.4
BcaB06g25777 Brassica carinata HOM05D004772 ORTHO05D006892 7.2e-185 651.4 642 57.6
Sp3g15060 Schrenkiella parvula HOM05D004772 ORTHO05D006892 7.2e-185 651.4 648 57.1
Aa31LG8G3880 Aethionema arabicum HOM05D004772 ORTHO05D006892 6.1e-184 648.3 658 58.1
Haze_01138 Corylus avellana HOM05D004772 ORTHO05D006892 4.4e-182 642.1 642 57.5
Haze_01142 Corylus avellana HOM05D004772 ORTHO05D006892 2.2e-181 639.8 642 57.3
AL3G29730 Arabidopsis lyrata HOM05D004772 ORTHO05D006892 2.8e-181 639.4 623 56.7
AT3G16810 Arabidopsis thaliana HOM05D004772 ORTHO05D006892 4.8e-181 638.6 635 55.7
Hund11943 Selenicereus undatus HOM05D004772 ORTHO05D006892 7.7e-179 631.3 617 57.7
AUR62016163 Chenopodium quinoa HOM05D004772 ORTHO05D006892 5.0e-178 628.6 624 56.6
Duzib151G1106 Durio zibethinus HOM05D004772 ORTHO05D006892 4.2e-177 625.5 560 59.8
Ciclev10004585m.g Citrus clementina HOM05D004772 ORTHO05D006892 1.7e-173 613.6 627 57.1
ATR0693G185 Amborella trichopoda HOM05D004772 ORTHO05D006892 2.2e-173 613.2 638 54.7
AUR62035077 Chenopodium quinoa HOM05D004772 ORTHO05D006892 2.2e-170 603.2 648 53.9
CSS0008369 Camellia sinensis var. sinensis HOM05D004772 ORTHO05D006892 3.8e-170 602.4 606 57.6
vmacro08098 Vaccinium macrocarpon HOM05D004772 ORTHO05D006892 1.5e-169 600.5 600 60.7
EL10Ac3g04940 Beta vulgaris HOM05D004772 ORTHO05D006892 6.1e-168 595.1 607 55.8
CARHR092060 Cardamine hirsuta HOM05D004772 ORTHO05D006892 7.5e-166 588.2 625 54.6
CAN.G1132.3 Capsicum annuum HOM05D004772 ORTHO05D006892 2.7e-163 579.7 364 86.8
Psat4g024680 Pisum sativum HOM05D004772 ORTHO05D006892 1.3e-162 577.4 619 55.1
CDE02G0409 Ceratophyllum demersum HOM05D004772 ORTHO05D006892 1.9e-161 573.5 633 52.8
CSS0024712 Camellia sinensis var. sinensis HOM05D004772 ORTHO05D006892 8.8e-159 564.7 599 56.9
MBI18_g04559_MAGBIO Magnolia biondii HOM05D004772 ORTHO05D006892 1.7e-157 560.5 637 53.7
Os03g0831100 Oryza sativa ssp. japonica HOM05D004772 ORTHO05D006892 1.4e-151 540.8 657 48.1
Atru.chr4.2923 Acer truncatum HOM05D004772 ORTHO05D006892 6.8e-151 538.5 631 52.1
COL.COLO4_34697 Corchorus olitorius HOM05D004772 ORTHO05D006892 8.9e-151 538.1 601 52.4
Hma1.2p1_0078F.1_g040270 Hydrangea macrophylla HOM05D004772 ORTHO05D006892 2.8e-144 516.5 443 65.5
SMO367G0742 Selaginella moellendorffii HOM05D004772 ORTHO05D006892 1.2e-134 484.6 563 47.6
HPP92_010664 Vanilla planifolia HOM05D004772 ORTHO05D006892 2.9e-133 479.9 581 49.7
Pp3c5_10580 Physcomitrium patens HOM05D004772 ORTHO05D006892 1.2e-128 464.5 652 46.8
Mapoly0099s0044 Marchantia polymorpha HOM05D004772 ORTHO05D006892 1.1e-121 441.4 661 42.5
unitig_747.g21102 Utricularia gibba HOM05D004772 ORTHO05D006892 4.6e-115 419.5 632 45.4
AagrBONN_evm.TU.Sc2ySwM_344.4680 Anthoceros agrestis HOM05D004772 ORTHO05D006892 3.1e-111 406.8 644 40.2
Oeu006429.1 Olea europaea HOM05D004772 ORTHO05D006892 3.4e-102 376.7 536 45.1
SHI00201 Sapria himalayana HOM05D004772 ORTHO05D006892 2.7e-99 367.1 320 62.5
CBR_g50950 Chara braunii HOM05D004772 ORTHO05D006892 1.4e-95 354.8 643 35.8
Psat5g033800 Pisum sativum HOM05D004772 ORTHO05D006892 2.1e-91 340.9 336 57.4
CDE09G0311 Ceratophyllum demersum HOM05D004772 ORTHO05D006892 8.4e-85 318.9 247 67.2
AUR62015585 Chenopodium quinoa HOM05D004772 ORTHO05D006892 5.7e-81 306.2 411 44.8
CDE09G1302 Ceratophyllum demersum HOM05D004772 ORTHO05D006892 1.8e-79 301.2 307 53.7
FAN17G1707 Fragaria x ananassa HOM05D004772 ORTHO05D006892 7.7e-78 295.8 290 56.2
Zm00001eb063600 Zea mays HOM05D004772 ORTHO05D006892 8.2e-72 275.8 373 44.5
MCO02G008 Micromonas commoda HOM05D004772 ORTHO05D006892 1.4e-58 231.9 594 30.3
Cre12.g528950 Chlamydomonas reinhardtii HOM05D004772 ORTHO05D006892 1.5e-57 228.4 711 28.0
AL769U10010 Arabidopsis lyrata HOM05D000209 ORTHO05D000129 1.3e-45 188.7 204 56.4
BolC5t30856H Brassica oleracea HOM05D004772 ORTHO05D006892 1.5e-44 185.3 236 47.5
Hma1.2p1_0078F.1_g040290 Hydrangea macrophylla HOM05D004772 ORTHO05D006892 4.2e-44 183.7 144 61.8
C09p33250 Brassica napus HOM05D004772 ORTHO05D006892 9.4e-44 182.6 246 44.7
PRCOL_00000476 Prasinoderma coloniale HOM05D004772 ORTHO05D006892 1.6e-43 181.8 616 26.9
BolC9t56162H Brassica oleracea HOM05D004772 ORTHO05D006892 3.4e-41 174.1 233 45.1
C05p21600 Brassica napus HOM05D004772 ORTHO05D006892 1.8e-39 168.3 233 44.2
Lalb_Chr12g0201101 Lupinus albus HOM05D004772 ORTHO05D006892 1.2e-35 155.6 177 49.2
SGA_v2.0_scaffold119G32683 Striga asiatica HOM05D000890 ORTHO05D000697 3.2e-31 141.0 129 55.8
Lalb_Chr12g0201121 Lupinus albus HOM05D004772 ORTHO05D006892 5.9e-30 136.7 107 64.5
Glyma.08G191100 Glycine max HOM05D004772 ORTHO05D006892 3.3e-28 131.0 99 65.7
SEGI_16207 Sequoiadendron giganteum HOM05D004772 ORTHO05D006892 3.3e-28 131.0 95 64.2
Cfa022899 Carpinus fangiana HOM05D004772 ORTHO05D006892 2.3e-26 124.8 572 23.4
BcaC05g26176 Brassica carinata HOM05D004772 ORTHO05D006892 6.8e-26 123.2 150 44.7
SalBow1G8756 Salvia bowleyana HOM05D004772 ORTHO05D006892 8.9e-26 122.9 174 46.0
Actinidia40307 Actinidia chinensis HOM05D004772 ORTHO05D006892 7.5e-25 119.8 83 66.3
Lalb_Chr12g0201111 Lupinus albus HOM05D004772 ORTHO05D020841 1.1e-23 115.9 146 49.3
SGA_v2.0_scaffold594G53106 Striga asiatica HOM05D004772 ORTHO05D006892 2.4e-23 114.8 288 31.6
Psat1g126160 Pisum sativum HOM05D004772 ORTHO05D009869 3.2e-15 87.8 77 62.3
Zm00001eb253290 Zea mays HOM05D004772 ORTHO05D037858 1.6e-14 85.5 130 44.6
BcaC01g03298 Brassica carinata HOM05D003366 ORTHO05D004045 1.0e-13 82.8 108 49.1
HPP92_010686 Vanilla planifolia HOM05D004772 ORTHO05D006892 1.7e-13 82.0 91 48.4
Zm00001eb258700 Zea mays HOM05D004772 ORTHO05D020841 3.0e-13 81.3 142 35.2
Zm00001eb103920 Zea mays HOM05D004772 ORTHO05D020841 6.6e-13 80.1 142 34.5
Zm00001eb355950 Zea mays HOM05D004772 ORTHO05D020841 6.6e-13 80.1 142 34.5
Nn4g25712 Nelumbo nucifera HOM05D004772 ORTHO05D006892 8.6e-13 79.7 120 42.5
Zm00001eb103930 Zea mays HOM05D004772 ORTHO05D020841 8.6e-13 79.7 142 34.5
Zm00001eb246110 Zea mays HOM05D004772 ORTHO05D020841 8.6e-13 79.7 142 34.5
BcaC04g21315 Brassica carinata HOM05D004772 ORTHO05D006892 1.1e-12 79.3 142 40.1
Zm00001eb160280 Zea mays HOM05D004772 ORTHO05D020841 2.5e-12 78.2 142 33.8
Medtr4g120460 Medicago truncatula HOM05D004772 ORTHO05D032275 3.7e-08 64.3 44 63.6
BcaB04g18910 Brassica carinata HOM05D004772 ORTHO05D032275 4.9e-08 63.9 47 55.3
Os12g0574400 Oryza sativa ssp. japonica HOM05D000810 ORTHO05D014916 5.4e-07 60.5 119 28.6
A09p56420 Brassica napus HOM05D004772 ORTHO05D042523 7.8e-06 56.6 48 50.0
BraA09t41036Z Brassica rapa HOM05D004772 ORTHO05D042523 7.8e-06 56.6 48 50.0


User provided reference genes

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