Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400000510 Solanum tuberosum HOM05D004552 ORTHO05D005501 1.0e-166 590.1 325 100.0
Sopen02g031920 Solanum pennellii HOM05D004552 ORTHO05D005501 5.8e-162 574.3 325 97.2
Solyc02g087180.4 Solanum lycopersicum HOM05D004552 ORTHO05D005501 3.8e-161 571.6 325 96.6
CAN.G206.55 Capsicum annuum HOM05D004552 ORTHO05D005501 1.5e-154 549.7 325 93.8
Solyc04g014240.1 Solanum lycopersicum HOM05D004552 ORTHO05D005501 2.1e-143 512.7 326 88.7
Nitab4.5_0008076g0010 Nicotiana tabacum HOM05D004552 ORTHO05D005501 1.0e-142 510.4 326 88.7
Peaxi162Scf00569g00015 Petunia axillaris HOM05D004552 ORTHO05D005501 2.0e-141 506.1 326 87.7
Sopen04g006350 Solanum pennellii HOM05D004552 ORTHO05D005501 2.0e-141 506.1 326 88.0
Nitab4.5_0006780g0010 Nicotiana tabacum HOM05D004552 ORTHO05D005501 2.5e-141 505.8 326 87.1
Nitab4.5_0001952g0150 Nicotiana tabacum HOM05D004552 ORTHO05D005501 2.4e-139 499.2 326 86.8
Nitab4.5_0005206g0040 Nicotiana tabacum HOM05D004552 ORTHO05D005501 4.1e-139 498.4 326 86.5
CAN.G525.45 Capsicum annuum HOM05D004552 ORTHO05D005501 1.6e-135 486.5 326 85.0
MSTRG.16520 Avicennia marina HOM05D004552 ORTHO05D005501 1.3e-121 440.3 336 76.2
Dinv37242 Davidia involucrata HOM05D004552 ORTHO05D005501 1.7e-121 439.9 335 77.6
Actinidia19722 Actinidia chinensis HOM05D004552 ORTHO05D005501 1.8e-118 429.9 335 73.7
Oeu029550.1 Olea europaea HOM05D004552 ORTHO05D005501 4.0e-118 428.7 335 75.2
Thecc.05G052700 Theobroma cacao HOM05D004552 ORTHO05D005501 2.0e-117 426.4 340 73.2
PGR004G2024 Punica granatum HOM05D004552 ORTHO05D005501 3.1e-115 419.1 337 73.0
Rhsim10G0168100 Rhododendron simsii HOM05D004552 ORTHO05D005501 1.7e-113 413.3 331 74.0
DCAR_009290 Daucus carota HOM05D004552 ORTHO05D005501 2.9e-113 412.5 332 70.8
COL.COLO4_27097 Corchorus olitorius HOM05D004552 ORTHO05D005501 1.5e-112 410.2 339 72.0
Rhsim11G0041500 Rhododendron simsii HOM05D004552 ORTHO05D005501 3.2e-112 409.1 331 73.4
TWI53G0358 Tripterygium wilfordii HOM05D004552 ORTHO05D005501 4.2e-112 408.7 347 71.8
Duzib106G1297 Durio zibethinus HOM05D004552 ORTHO05D005501 1.2e-111 407.1 341 70.7
MELO3C014263.2 Cucumis melo HOM05D004552 ORTHO05D005501 3.6e-111 405.6 338 71.0
Oeu026072.1 Olea europaea HOM05D004552 ORTHO05D005501 4.7e-111 405.2 333 72.1
ClCG04G008790 Citrullus lanatus HOM05D004552 ORTHO05D005501 2.3e-110 402.9 338 70.1
DCAR_002493 Daucus carota HOM05D004552 ORTHO05D005501 2.3e-110 402.9 332 69.6
CsaV3_4G024350 Cucumis sativus L. HOM05D004552 ORTHO05D005501 3.0e-110 402.5 335 71.9
Cc00_g23990 Coffea canephora HOM05D004552 ORTHO05D005501 1.5e-109 400.2 336 71.7
Gohir.A03G063400 Gossypium hirsutum HOM05D004552 ORTHO05D005501 2.6e-109 399.4 344 67.7
ClCG10G016170 Citrullus lanatus HOM05D004552 ORTHO05D005501 4.4e-109 398.7 328 70.1
Gorai.003G108400 Gossypium raimondii HOM05D004552 ORTHO05D005501 2.2e-108 396.4 344 67.7
SalBow4G1233 Salvia bowleyana HOM05D004552 ORTHO05D005501 3.7e-108 395.6 330 70.6
CiPaw.09G181100 Carya illinoinensis HOM05D004552 ORTHO05D005501 4.9e-108 395.2 338 69.8
Rhsim11G0041800 Rhododendron simsii HOM05D004552 ORTHO05D005501 4.9e-108 395.2 329 72.0
Ciclev10011831m.g Citrus clementina HOM05D004552 ORTHO05D005501 6.3e-108 394.8 337 68.5
THA.LOC104823245 Tarenaya hassleriana HOM05D004552 ORTHO05D005501 8.3e-108 394.4 341 70.1
Gohir.D03G102900 Gossypium hirsutum HOM05D004552 ORTHO05D005501 1.1e-107 394.0 344 67.4
Cfa017496 Carpinus fangiana HOM05D004552 ORTHO05D005501 1.4e-107 393.7 340 70.3
Sed0010830 Sechium edule HOM05D004552 ORTHO05D005501 1.8e-107 393.3 336 70.2
QL07p045485 Quercus lobata HOM05D004552 ORTHO05D005501 4.1e-107 392.1 338 69.5
Haze_20666 Corylus avellana HOM05D004552 ORTHO05D005501 5.4e-107 391.7 340 69.4
Hund08942 Selenicereus undatus HOM05D004552 ORTHO05D005501 1.6e-106 390.2 334 70.1
CSS0033785 Camellia sinensis var. sinensis HOM05D004552 ORTHO05D005501 2.7e-106 389.4 335 69.9
Cc03_g15870 Coffea canephora HOM05D004552 ORTHO05D005501 4.5e-106 388.7 323 72.8
TAR369G0596 Trochodendron aralioides HOM05D004552 ORTHO05D005501 7.7e-106 387.9 336 69.9
Prupe.2G197600 Prunus persica HOM05D004552 ORTHO05D005501 1.1e-104 384.0 342 67.3
RcHm_v2.0_Chr1g0360161 Rosa chinensis HOM05D004552 ORTHO05D005501 1.9e-104 383.3 340 67.6
Migut.K00511 Erythranthe guttata HOM05D004552 ORTHO05D005501 4.3e-104 382.1 332 69.6
Atru.chr8.2543 Acer truncatum HOM05D004552 ORTHO05D005501 5.6e-104 381.7 325 69.2
HanXRQChr05g0156781 Helianthus annuus HOM05D004552 ORTHO05D005501 2.1e-103 379.8 328 68.9
Manes.09G080009 Manihot esculenta HOM05D004552 ORTHO05D005501 1.8e-102 376.7 340 64.7
EL10Ac7g16819 Beta vulgaris HOM05D004552 ORTHO05D005501 4.0e-102 375.6 335 67.2
Nn1g07079 Nelumbo nucifera HOM05D004552 ORTHO05D005501 5.2e-102 375.2 339 66.7
Lj3g0026232 Lotus japonicus HOM05D004552 ORTHO05D005501 1.5e-101 373.6 338 66.9
arahy.Tifrunner.gnm1.ann1.CZIV0N Arachis hypogaea HOM05D004552 ORTHO05D005501 4.4e-101 372.1 334 68.6
Lj5g0019559 Lotus japonicus HOM05D004552 ORTHO05D005501 4.4e-101 372.1 338 66.6
Sp6g39730 Schrenkiella parvula HOM05D004552 ORTHO05D005501 5.7e-101 371.7 339 67.6
Lsat_1_v5_gn_5_8941 Lactuca sativa HOM05D004552 ORTHO05D005501 9.8e-101 370.9 327 67.6
Manes.09G079900 Manihot esculenta HOM05D004552 ORTHO05D005501 9.8e-101 370.9 339 64.0
Potri.016G084200 Populus trichocarpa HOM05D004552 ORTHO05D005501 1.3e-100 370.5 329 67.2
arahy.Tifrunner.gnm1.ann1.LN9G9C Arachis hypogaea HOM05D004552 ORTHO05D005501 2.2e-100 369.8 334 68.3
arahy.Tifrunner.gnm1.ann1.6MTV2V Arachis hypogaea HOM05D004552 ORTHO05D005501 2.9e-100 369.4 334 68.3
unitig_899.g15236 Utricularia gibba HOM05D004552 ORTHO05D005501 3.7e-100 369.0 336 67.3
vmacro04719 Vaccinium macrocarpon HOM05D004552 ORTHO05D005501 4.9e-100 368.6 324 68.8
arahy.Tifrunner.gnm1.ann1.URH0Q0 Arachis hypogaea HOM05D004552 ORTHO05D005501 6.4e-100 368.2 334 67.7
Manes.08G002200 Manihot esculenta HOM05D004552 ORTHO05D005501 6.4e-100 368.2 338 66.0
Thhalv10013588m.g Eutrema salsugineum HOM05D004552 ORTHO05D005501 1.1e-99 367.5 346 66.2
Lj4g0012826 Lotus japonicus HOM05D004552 ORTHO05D005501 1.4e-99 367.1 338 66.3
BcaC06g32015 Brassica carinata HOM05D004552 ORTHO05D005501 1.8e-99 366.7 331 68.6
CARHR210480 Cardamine hirsuta HOM05D004552 ORTHO05D005501 1.8e-99 366.7 340 67.1
AUR62025361 Chenopodium quinoa HOM05D004552 ORTHO05D005501 7.0e-99 364.8 333 66.1
Glyma.08G287300 Glycine max HOM05D004552 ORTHO05D005501 1.2e-98 364.0 329 67.5
PSO832G0086 Papaver somniferum HOM05D004552 ORTHO05D005501 1.6e-98 363.6 337 63.8
AUR62028362 Chenopodium quinoa HOM05D004552 ORTHO05D005501 2.7e-98 362.8 333 66.1
Medtr8g075790 Medicago truncatula HOM05D004552 ORTHO05D005501 3.5e-98 362.5 339 66.1
RcHm_v2.0_Chr1g0361081 Rosa chinensis HOM05D004552 ORTHO05D005501 4.6e-98 362.1 337 63.8
arahy.Tifrunner.gnm1.ann1.52IM1F Arachis hypogaea HOM05D004552 ORTHO05D005501 5.9e-98 361.7 315 68.6
Ah.14g084480 Amaranthus hybridus HOM05D004552 ORTHO05D005501 7.8e-98 361.3 333 64.6
ECA246G2681 Erigeron canadensis HOM05D003206 ORTHO05D005207 1.3e-97 360.5 326 66.0
Sabra16G0091200 Salix brachista HOM05D004552 ORTHO05D005501 1.3e-97 360.5 329 66.6
TPR.G33503 Trifolium pratense HOM05D004552 ORTHO05D005501 2.3e-97 359.8 338 65.7
C09p73810 Brassica napus HOM05D004552 ORTHO05D005501 3.9e-97 359.0 332 66.9
BolC9t60115H Brassica oleracea HOM05D004552 ORTHO05D005501 3.9e-97 359.0 332 66.9
Ca_19605_v3 Cicer arietinum L. HOM05D004552 ORTHO05D005501 3.9e-97 359.0 339 65.8
PSO210G6420 Papaver somniferum HOM05D004552 ORTHO05D005501 3.9e-97 359.0 336 64.6
VMungo0251G2800 Vigna mungo HOM05D004552 ORTHO05D005501 6.6e-97 358.2 326 66.0
Phvul.003G261400 Phaseolus vulgaris HOM05D004552 ORTHO05D005501 8.6e-97 357.8 328 67.4
Medtr6g089780 Medicago truncatula HOM05D004552 ORTHO05D005501 1.1e-96 357.5 338 64.8
Ca_22379_v3 Cicer arietinum L. HOM05D004552 ORTHO05D005501 2.5e-96 356.3 339 65.2
Sc07g0006230 Simmondsia chinensis HOM05D004552 ORTHO05D005501 9.5e-96 354.4 336 65.5
Glyma.06G188800 Glycine max HOM05D004552 ORTHO05D005501 1.2e-95 354.0 329 65.7
FAN03G3426 Fragaria x ananassa HOM05D004552 ORTHO05D005501 1.6e-95 353.6 341 63.6
FvH4_7g16920 Fragaria vesca HOM05D004552 ORTHO05D005501 2.8e-95 352.8 340 63.8
AT5G02850 Arabidopsis thaliana HOM05D004552 ORTHO05D005501 3.6e-95 352.4 337 65.9
A10p32880 Brassica napus HOM05D004552 ORTHO05D005501 8.0e-95 351.3 335 66.0
FAN01G0370 Fragaria x ananassa HOM05D004552 ORTHO05D005501 1.4e-94 350.5 340 63.5
Glyma.13G067700 Glycine max HOM05D004552 ORTHO05D005501 1.4e-94 350.5 329 66.3
Psat7g019080 Pisum sativum HOM05D004552 ORTHO05D005501 1.4e-94 350.5 359 62.4
FAN06G4506 Fragaria x ananassa HOM05D004552 ORTHO05D005501 1.5e-93 347.1 340 63.2
AL6G12120 Arabidopsis lyrata HOM05D004552 ORTHO05D005501 2.0e-93 346.7 338 64.2
Psat4g100360 Pisum sativum HOM05D004552 ORTHO05D005501 3.4e-93 345.9 346 60.7
Lalb_Chr05g0229841 Lupinus albus HOM05D004552 ORTHO05D005501 5.8e-93 345.1 336 63.7
CANSAT56G3582 Cannabis sativa HOM05D004552 ORTHO05D005501 9.8e-93 344.4 332 64.5
Carub.0006s0165 Capsella rubella HOM05D004552 ORTHO05D005501 9.2e-91 337.8 343 63.6
FAN06G3324 Fragaria x ananassa HOM05D004552 ORTHO05D005501 1.2e-90 337.4 326 63.5
SGA_v2.0_scaffold94G28661 Striga asiatica HOM05D004552 ORTHO05D005501 6.0e-90 335.1 336 65.2
Aa31LG1G22060 Aethionema arabicum HOM05D004552 ORTHO05D005501 1.3e-89 334.0 341 61.6
MBI18_g25517_MAGBIO Magnolia biondii HOM05D004552 ORTHO05D005501 1.3e-89 334.0 349 61.9
SGA_v2.0_scaffold204G41624 Striga asiatica HOM05D004552 ORTHO05D005501 1.3e-89 334.0 336 64.9
Eucgr.J03059 Eucalyptus grandis HOM05D004552 ORTHO05D005501 1.9e-88 330.1 350 60.3
FvH4_7g17650 Fragaria vesca HOM05D004552 ORTHO05D005501 2.5e-88 329.7 337 61.1
Lj6g0002066 Lotus japonicus HOM05D004552 ORTHO05D005501 1.4e-86 323.9 338 59.5
TPR.G27980 Trifolium pratense HOM05D004552 ORTHO05D005501 4.0e-86 322.4 259 66.8
FAN06G0991 Fragaria x ananassa HOM05D004552 ORTHO05D005501 8.9e-86 321.2 333 60.7
Aqoxy4G02198 Aquilegia oxysepala HOM05D004552 ORTHO05D005501 1.2e-85 320.9 349 59.3
FAN03G1811 Fragaria x ananassa HOM05D004552 ORTHO05D005501 1.5e-85 320.5 336 58.9
CDE04G3741 Ceratophyllum demersum HOM05D004552 ORTHO05D005501 1.4e-83 313.9 334 60.2
SHI12593 Sapria himalayana HOM05D004552 ORTHO05D005501 9.2e-83 311.2 330 59.4
Lj6g0014683 Lotus japonicus HOM05D004552 ORTHO05D005501 2.5e-80 303.1 290 61.7
PSO675G1725 Papaver somniferum HOM05D004552 ORTHO05D005501 4.4e-77 292.4 330 54.8
Lj6g0013650 Lotus japonicus HOM05D004552 ORTHO05D005501 1.6e-74 283.9 338 55.3
RhsimUnG0119000 Rhododendron simsii HOM05D004552 ORTHO05D005501 3.6e-71 272.7 238 69.3
ATR0950G002 Amborella trichopoda HOM05D004552 ORTHO05D005501 8.4e-68 261.5 341 51.9
ATR0594G066 Amborella trichopoda HOM05D004552 ORTHO05D005501 5.4e-67 258.8 339 52.2
Os09g0540500 Oryza sativa ssp. japonica HOM05D004552 ORTHO05D005501 3.0e-65 253.1 349 47.6
SEGI_01207 Sequoiadendron giganteum HOM05D004552 ORTHO05D005501 4.0e-62 242.7 342 48.0
HPP92_012944 Vanilla planifolia HOM05D004552 ORTHO05D005501 2.6e-61 240.0 271 53.1
Zm00001eb103820 Zea mays HOM05D004552 ORTHO05D005501 2.6e-61 240.0 271 52.8
CDE07G0444 Ceratophyllum demersum HOM05D004552 ORTHO05D005501 1.4e-59 234.2 318 52.2
FAN01G0473 Fragaria x ananassa HOM05D004552 ORTHO05D005501 6.4e-52 208.8 328 48.2
C03p01200 Brassica napus HOM05D004552 ORTHO05D005501 3.0e-49 199.9 275 53.8
BolC3t12680H Brassica oleracea HOM05D004552 ORTHO05D005501 3.0e-49 199.9 275 53.8
FvH4_6g20640 Fragaria vesca HOM05D004552 ORTHO05D005501 3.3e-48 196.4 243 49.4
FAN14G1867 Fragaria x ananassa HOM05D004552 ORTHO05D005501 2.0e-45 187.2 172 56.4
A03p00930 Brassica napus HOM05D004552 ORTHO05D005501 2.6e-45 186.8 187 59.4
Actinidia11233 Actinidia chinensis HOM05D004552 ORTHO05D005501 1.9e-43 180.6 341 44.9
SEGI_11500 Sequoiadendron giganteum HOM05D004552 ORTHO05D005501 2.5e-43 180.3 343 42.9
CSS0042772 Camellia sinensis var. sinensis HOM05D004552 ORTHO05D005501 3.3e-40 169.9 132 68.9
Mapoly0007s0084 Marchantia polymorpha HOM05D004552 ORTHO05D005501 1.3e-39 167.9 357 38.7
BcaB01g05872 Brassica carinata HOM05D004552 ORTHO05D005501 1.8e-38 164.1 185 56.2
Pp3c14_11490 Physcomitrium patens HOM05D004552 ORTHO05D005501 2.6e-37 160.2 334 37.1
THA.LOC104827455 Tarenaya hassleriana HOM05D004552 ORTHO05D005501 1.9e-35 154.1 145 62.8
AagrBONN_evm.TU.Sc2ySwM_362.1766 Anthoceros agrestis HOM05D004552 ORTHO05D005501 9.3e-35 151.8 249 37.8
Lsat_1_v5_gn_8_95200 Lactuca sativa HOM05D004552 ORTHO05D005501 3.6e-34 149.8 102 75.5
BraA03t09475Z Brassica rapa HOM05D004552 ORTHO05D005501 1.0e-33 148.3 200 50.0
PGSC0003DMG400023633 Solanum tuberosum HOM05D004552 ORTHO05D005501 3.0e-33 146.7 90 85.6
CBR_g38095 Chara braunii HOM05D004552 ORTHO05D005501 7.7e-29 132.1 249 36.1
BraA10t45325Z Brassica rapa HOM05D001414 ORTHO05D000619 1.3e-28 131.3 148 63.5
VMungo0647G0506 Vigna mungo HOM05D004552 ORTHO05D005501 5.0e-28 129.4 106 67.0
Lj3E543T1 Lonicera japonica HOM05D004552 ORTHO05D005501 2.8e-23 113.6 117 73.5
AagrBONN_evm.TU.Sc2ySwM_344.2458 Anthoceros agrestis HOM05D004552 ORTHO05D005501 3.7e-15 86.7 230 28.3
MCO09G463 Micromonas commoda HOM05D004552 ORTHO05D005501 6.3e-07 59.3 198 33.3


User provided reference genes

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