Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400000012 Solanum tuberosum HOM05D000921 ORTHO05D002852 4.9e-54 214.2 103 100.0
Sopen01g037870 Solanum pennellii HOM05D000921 ORTHO05D002852 1.4e-48 196.1 102 92.2
Solyc01g094060.4 Solanum lycopersicum HOM05D000921 ORTHO05D002852 4.9e-46 187.6 102 91.2
Nitab4.5_0002436g0070 Nicotiana tabacum HOM05D000921 ORTHO05D002852 3.6e-41 171.4 102 80.4
Nitab4.5_0005340g0070 Nicotiana tabacum HOM05D000921 ORTHO05D002852 4.0e-40 167.9 102 79.4
Peaxi162Scf00416g00310 Petunia axillaris HOM05D000921 ORTHO05D002852 7.5e-39 163.7 103 78.6
Dinv43732 Davidia involucrata HOM05D000921 ORTHO05D002852 9.5e-26 120.2 103 59.2
Thecc.01G372900 Theobroma cacao HOM05D000921 ORTHO05D002852 2.6e-23 112.1 103 51.5
Dinv32396 Davidia involucrata HOM05D000921 ORTHO05D002852 5.8e-23 110.9 103 57.3
CSS0003914 Camellia sinensis var. sinensis HOM05D000921 ORTHO05D002852 1.7e-22 109.4 103 55.3
Actinidia09569 Actinidia chinensis HOM05D000921 ORTHO05D002852 3.8e-22 108.2 103 55.3
Eucgr.E01352 Eucalyptus grandis HOM05D000921 ORTHO05D002852 4.9e-22 107.8 103 53.4
CANSAT56G4522 Cannabis sativa HOM05D000921 ORTHO05D002852 1.4e-21 106.3 103 51.5
Gohir.A11G082900 Gossypium hirsutum HOM05D000921 ORTHO05D002852 1.4e-21 106.3 103 49.5
Gohir.D11G087000 Gossypium hirsutum HOM05D000921 ORTHO05D002852 1.4e-21 106.3 103 49.5
Gorai.007G092900 Gossypium raimondii HOM05D000921 ORTHO05D002852 1.4e-21 106.3 103 49.5
Potri.014G072600 Populus trichocarpa HOM05D000921 ORTHO05D002852 3.2e-21 105.1 103 49.5
QL08p051741 Quercus lobata HOM05D000921 ORTHO05D002852 7.1e-21 104.0 103 51.5
Cpa.g.sc18.150 Carica papaya HOM05D000921 ORTHO05D002852 9.2e-21 103.6 103 49.5
Potri.002G150000 Populus trichocarpa HOM05D000921 ORTHO05D002852 9.2e-21 103.6 103 49.5
CiPaw.02G165500 Carya illinoinensis HOM05D000921 ORTHO05D002852 1.2e-20 103.2 102 52.0
Prupe.2G149000 Prunus persica HOM05D000921 ORTHO05D002852 2.7e-20 102.1 103 51.5
ClCG05G002030 Citrullus lanatus HOM05D000921 ORTHO05D002852 3.5e-20 101.7 104 51.9
MELO3C006169.2 Cucumis melo HOM05D000921 ORTHO05D002852 1.0e-19 100.1 103 51.5
Manes.05G043300 Manihot esculenta HOM05D000921 ORTHO05D002852 1.3e-19 99.8 102 51.0
CsaV3_3G009490 Cucumis sativus L. HOM05D000921 ORTHO05D002852 2.3e-19 99.0 103 51.5
THA.LOC104827617 Tarenaya hassleriana HOM05D000921 ORTHO05D002852 2.3e-19 99.0 102 49.0
EL10Ac1g00924 Beta vulgaris HOM05D000921 ORTHO05D002852 3.0e-19 98.6 103 50.5
Migut.F01430 Erythranthe guttata HOM05D000921 ORTHO05D002852 6.6e-19 97.4 102 48.0
Haze_16736 Corylus avellana HOM05D000921 ORTHO05D002852 8.7e-19 97.1 102 51.0
Lj3g0001885 Lotus japonicus HOM05D000921 ORTHO05D002852 8.7e-19 97.1 102 44.1
Atru.chr5.339 Acer truncatum HOM05D000921 ORTHO05D002852 1.5e-18 96.3 102 47.1
AUR62013603 Chenopodium quinoa HOM05D000921 ORTHO05D002852 1.5e-18 96.3 104 51.0
Gorai.004G155500 Gossypium raimondii HOM05D000921 ORTHO05D002852 1.5e-18 96.3 102 47.1
TPR.G28301 Trifolium pratense HOM05D000921 ORTHO05D002852 1.9e-18 95.9 102 46.1
Sed0001143 Sechium edule HOM05D000921 ORTHO05D002852 2.5e-18 95.5 103 47.6
GSVIVG01027547001 Vitis vinifera HOM05D000921 ORTHO05D002852 2.5e-18 95.5 102 48.0
Lalb_Chr07g0189601 Lupinus albus HOM05D000921 ORTHO05D002852 3.3e-18 95.1 102 43.1
Nn6g34350 Nelumbo nucifera HOM05D000921 ORTHO05D002852 3.3e-18 95.1 105 50.5
Gohir.A08G128400 Gossypium hirsutum HOM05D000921 ORTHO05D002852 4.3e-18 94.7 102 47.1
RcHm_v2.0_Chr1g0351141 Rosa chinensis HOM05D000921 ORTHO05D002852 4.3e-18 94.7 106 50.9
Ah.05g175310 Amaranthus hybridus HOM05D000921 ORTHO05D002852 5.6e-18 94.4 104 48.1
Sp5g02330 Schrenkiella parvula HOM05D000921 ORTHO05D002852 7.3e-18 94.0 105 46.7
Aa31LG1G27030 Aethionema arabicum HOM05D000921 ORTHO05D002852 9.6e-18 93.6 102 47.1
Lalb_Chr01g0021281 Lupinus albus HOM05D000921 ORTHO05D002852 9.6e-18 93.6 102 45.1
LjContig00136g0027596 Lotus japonicus HOM05D000921 ORTHO05D002852 1.3e-17 93.2 104 49.0
Cc02_g36420 Coffea canephora HOM05D000921 ORTHO05D002852 1.6e-17 92.8 102 48.0
Sed0009254 Sechium edule HOM05D000921 ORTHO05D002852 1.6e-17 92.8 103 48.5
TPR.G37773 Trifolium pratense HOM05D000921 ORTHO05D002852 1.6e-17 92.8 103 50.5
Rhsim07G0024100 Rhododendron simsii HOM05D000921 ORTHO05D002852 2.8e-17 92.0 102 49.0
arahy.Tifrunner.gnm1.ann1.4FT79Q Arachis hypogaea HOM05D000921 ORTHO05D002852 3.6e-17 91.7 102 44.1
Ca_07837_v3 Cicer arietinum L. HOM05D000921 ORTHO05D002852 3.6e-17 91.7 102 48.0
Ca_23831_v3 Cicer arietinum L. HOM05D000921 ORTHO05D002852 3.6e-17 91.7 102 44.1
Medtr8g035750 Medicago truncatula HOM05D000921 ORTHO05D002852 3.6e-17 91.7 102 43.1
Lj9A573T77 Lonicera japonica HOM05D000921 ORTHO05D002852 6.2e-17 90.9 103 52.4
Glyma.03G021400 Glycine max HOM05D000921 ORTHO05D002852 1.1e-16 90.1 104 47.1
FAN10G3046 Fragaria x ananassa HOM05D000921 ORTHO05D002852 1.4e-16 89.7 103 46.6
FAN10G3969 Fragaria x ananassa HOM05D000921 ORTHO05D002852 1.4e-16 89.7 103 46.6
AT2G45540 Arabidopsis thaliana HOM05D000921 ORTHO05D002852 1.8e-16 89.4 102 44.1
TWI14G1087 Tripterygium wilfordii HOM05D000921 ORTHO05D002852 1.8e-16 89.4 104 44.2
CARHR140720 Cardamine hirsuta HOM05D000921 ORTHO05D002852 2.4e-16 89.0 102 44.1
Lsat_1_v5_gn_7_7601 Lactuca sativa HOM05D000921 ORTHO05D002852 2.4e-16 89.0 102 43.1
SGA_v2.0_scaffold303G47875 Striga asiatica HOM05D000921 ORTHO05D002852 2.4e-16 89.0 102 42.2
vmacro13368 Vaccinium macrocarpon HOM05D000921 ORTHO05D002852 2.4e-16 89.0 102 47.1
AL5G43240 Arabidopsis lyrata HOM05D000921 ORTHO05D002852 5.3e-16 87.8 102 42.2
Carub.0004s2816 Capsella rubella HOM05D000921 ORTHO05D002852 5.3e-16 87.8 102 44.1
VMungo0331G0396 Vigna mungo HOM05D000921 ORTHO05D002852 5.3e-16 87.8 104 43.3
FAN03G0226 Fragaria x ananassa HOM05D000921 ORTHO05D002852 6.9e-16 87.4 103 45.6
unitig_22.g5374 Utricularia gibba HOM05D000921 ORTHO05D002852 6.9e-16 87.4 102 46.1
C04p06480 Brassica napus HOM05D000921 ORTHO05D002852 9.0e-16 87.0 102 46.1
BolC4t22272H Brassica oleracea HOM05D000921 ORTHO05D002852 9.0e-16 87.0 102 46.1
COL.COLO4_12586 Corchorus olitorius HOM05D000921 ORTHO05D002852 1.2e-15 86.7 104 45.2
MD02G1199600 Malus domestica HOM05D000921 ORTHO05D002852 1.2e-15 86.7 102 45.1
Psat3g104040 Pisum sativum HOM05D000921 ORTHO05D002852 1.2e-15 86.7 95 52.6
THA.LOC104801996 Tarenaya hassleriana HOM05D000921 ORTHO05D002852 1.2e-15 86.7 102 46.1
FAN01G1835 Fragaria x ananassa HOM05D000921 ORTHO05D002852 1.5e-15 86.3 103 44.7
BcaC02g10197 Brassica carinata HOM05D000921 ORTHO05D002852 2.0e-15 85.9 102 42.2
A05p05550 Brassica napus HOM05D000921 ORTHO05D002852 2.0e-15 85.9 102 44.1
BraA05t19525Z Brassica rapa HOM05D000921 ORTHO05D002852 2.0e-15 85.9 102 44.1
Thhalv10001277m.g Eutrema salsugineum HOM05D000921 ORTHO05D002852 2.0e-15 85.9 102 44.1
FvH4_7g12350 Fragaria vesca HOM05D000921 ORTHO05D002852 2.0e-15 85.9 103 44.7
FAN06G2098 Fragaria x ananassa HOM05D000921 ORTHO05D002852 2.0e-15 85.9 103 44.7
FAN06G4917 Fragaria x ananassa HOM05D000921 ORTHO05D002852 2.0e-15 85.9 103 44.7
Phvul.010G048900 Phaseolus vulgaris HOM05D000921 ORTHO05D002852 4.4e-15 84.7 102 42.2
A04p01340 Brassica napus HOM05D000921 ORTHO05D002852 5.8e-15 84.3 102 42.2
C04p31670 Brassica napus HOM05D000921 ORTHO05D002852 5.8e-15 84.3 102 42.2
BolC4t24715H Brassica oleracea HOM05D000921 ORTHO05D002852 5.8e-15 84.3 102 42.2
BraA04t15853Z Brassica rapa HOM05D000921 ORTHO05D002852 5.8e-15 84.3 102 42.2
ECA236G3038 Erigeron canadensis HOM05D000921 ORTHO05D002852 5.8e-15 84.3 102 45.1
Sc26g0001150 Simmondsia chinensis HOM05D000921 ORTHO05D002852 7.6e-15 84.0 102 45.1
Medtr7g075660 Medicago truncatula HOM05D000921 ORTHO05D002852 9.9e-15 83.6 102 46.1
Thhalv10005733m.g Eutrema salsugineum HOM05D000921 ORTHO05D002852 1.3e-14 83.2 105 43.8
VMungo1383G3171 Vigna mungo HOM05D000921 ORTHO05D002852 1.3e-14 83.2 103 48.5
AL4G44720 Arabidopsis lyrata HOM05D000921 ORTHO05D002852 2.2e-14 82.4 102 41.2
ECA240G3430 Erigeron canadensis HOM05D000921 ORTHO05D002852 2.2e-14 82.4 102 44.1
Glyma.09G267100 Glycine max HOM05D000921 ORTHO05D002852 2.9e-14 82.0 102 42.2
HanXRQChr04g0122231 Helianthus annuus HOM05D000921 ORTHO05D002852 2.9e-14 82.0 102 43.1
Aqoxy7G00539 Aquilegia oxysepala HOM05D000921 ORTHO05D002852 3.8e-14 81.6 105 42.9
Carub.0005s2767 Capsella rubella HOM05D000921 ORTHO05D002852 3.8e-14 81.6 102 41.2
PSO782G1119 Papaver somniferum HOM05D000921 ORTHO05D002852 4.9e-14 81.3 103 41.7
Gorai.004G041500 Gossypium raimondii HOM05D000921 ORTHO05D002852 6.4e-14 80.9 102 43.1
Psat4g150320 Pisum sativum HOM05D000921 ORTHO05D002852 1.1e-13 80.1 102 40.2
BcaC07g42649 Brassica carinata HOM05D000921 ORTHO05D002852 1.4e-13 79.7 101 39.6
Aa31LG10G15130 Aethionema arabicum HOM05D000921 ORTHO05D002852 3.2e-13 78.6 102 38.2
Gohir.D08G042866 Gossypium hirsutum HOM05D000921 ORTHO05D002852 3.2e-13 78.6 102 42.2
Gohir.D08G042932 Gossypium hirsutum HOM05D000921 ORTHO05D002852 3.2e-13 78.6 102 42.2
Lsat_1_v5_gn_3_135480 Lactuca sativa HOM05D000921 ORTHO05D002852 3.2e-13 78.6 102 39.2
Phvul.008G074600 Phaseolus vulgaris HOM05D000921 ORTHO05D002852 3.2e-13 78.6 107 41.1
TAR636G1827 Trochodendron aralioides HOM05D000921 ORTHO05D002852 3.2e-13 78.6 104 42.3
HanXRQChr03g0093641 Helianthus annuus HOM05D000921 ORTHO05D002852 5.4e-13 77.8 100 41.0
PSO478G4503 Papaver somniferum HOM05D000921 ORTHO05D002852 5.4e-13 77.8 102 41.2
CARHR171310 Cardamine hirsuta HOM05D000921 ORTHO05D002852 7.1e-13 77.4 105 39.0
Gohir.A08G031900 Gossypium hirsutum HOM05D000921 ORTHO05D002852 7.1e-13 77.4 102 42.2
MBI12_g38016_MAGBIO Magnolia biondii HOM05D000921 ORTHO05D002852 2.1e-12 75.9 103 45.6
ATR0757G137 Amborella trichopoda HOM05D000921 ORTHO05D002852 4.6e-12 74.7 108 41.7
BraA09t40739Z Brassica rapa HOM05D000921 ORTHO05D002852 4.6e-12 74.7 102 39.2
Nn1g01159 Nelumbo nucifera HOM05D000921 ORTHO05D002852 6.0e-12 74.3 104 39.4
BolC8t51174H Brassica oleracea HOM05D000921 ORTHO05D002852 7.8e-12 73.9 104 38.5
MBI04_g43159_MAGBIO Magnolia biondii HOM05D000921 ORTHO05D002852 1.7e-11 72.8 108 40.7
A09p53140 Brassica napus HOM05D000921 ORTHO05D002852 3.9e-11 71.6 102 38.2
C08p35860 Brassica napus HOM05D000921 ORTHO05D002852 5.1e-11 71.2 101 38.6
BcaC07g40611 Brassica carinata HOM05D000921 ORTHO05D002852 6.6e-11 70.9 101 38.6
AUR62004245 Chenopodium quinoa HOM05D000921 ORTHO05D002852 3.3e-10 68.6 83 48.2
Sp4g27560 Schrenkiella parvula HOM05D000921 ORTHO05D002852 1.6e-09 66.2 83 42.2
Zm00001eb074430 Zea mays HOM05D000921 ORTHO05D002852 1.6e-09 66.2 103 37.9
DCAR_006882 Daucus carota HOM05D000921 ORTHO05D002852 2.1e-09 65.9 102 38.2
DCAR_025120 Daucus carota HOM05D000921 ORTHO05D002852 4.8e-09 64.7 102 40.2
Zm00001eb249850 Zea mays HOM05D000921 ORTHO05D002852 4.8e-09 64.7 103 36.9
Lj7C526G8 Lonicera japonica HOM05D000921 ORTHO05D002852 6.2e-09 64.3 102 42.2
CDE11G0537 Ceratophyllum demersum HOM05D000921 ORTHO05D002852 1.4e-08 63.2 103 37.9
Os04g0555500 Oryza sativa ssp. japonica HOM05D000921 ORTHO05D002852 1.4e-08 63.2 103 36.9
Os02g0663300 Oryza sativa ssp. japonica HOM05D000921 ORTHO05D002852 4.0e-08 61.6 105 36.2
Psat6g093800 Pisum sativum HOM05D001439 ORTHO05D007599 2.6e-07 58.9 70 47.1
Ciclev10018468m.g Citrus clementina HOM05D000921 ORTHO05D002852 7.6e-07 57.4 102 34.3
HPP92_009981 Vanilla planifolia HOM05D000921 ORTHO05D002852 3.8e-06 55.1 119 32.8
HPP92_003358 Vanilla planifolia HOM05D000921 ORTHO05D002852 4.9e-06 54.7 103 34.0


User provided reference genes

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