Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR142G4384 Punica granatum HOM05D005636 ORTHO05D006912 2.7e-244 848.2 415 100.0
Ciclev10031950m.g Citrus clementina HOM05D005636 ORTHO05D006912 5.1e-110 402.1 374 58.6
Thecc.01G161100 Theobroma cacao HOM05D005636 ORTHO05D006912 5.6e-109 398.7 370 57.8
Eucgr.K01200 Eucalyptus grandis HOM05D005636 ORTHO05D006912 2.4e-107 393.3 369 60.2
MD17G1140200 Malus domestica HOM05D005636 ORTHO05D006912 2.0e-106 390.2 380 56.1
COL.COLO4_33742 Corchorus olitorius HOM05D005636 ORTHO05D006912 9.9e-106 387.9 370 57.3
Sabra02G0049100 Salix brachista HOM05D005636 ORTHO05D006912 1.3e-105 387.5 378 55.3
Gohir.A05G378700 Gossypium hirsutum HOM05D005636 ORTHO05D006912 2.2e-105 386.7 379 54.1
Gohir.D04G036900 Gossypium hirsutum HOM05D005636 ORTHO05D006912 8.4e-105 384.8 379 54.1
Gorai.012G041700 Gossypium raimondii HOM05D005636 ORTHO05D006912 2.4e-104 383.3 379 53.8
Duzib187G1993 Durio zibethinus HOM05D005636 ORTHO05D006912 1.6e-103 380.6 369 55.6
Potri.002G060600 Populus trichocarpa HOM05D005636 ORTHO05D006912 1.3e-102 377.5 360 55.3
Manes.02G084000 Manihot esculenta HOM05D005636 ORTHO05D006912 1.7e-102 377.1 372 54.3
MD09G1152800 Malus domestica HOM05D005636 ORTHO05D006912 1.9e-101 373.6 332 57.5
RcHm_v2.0_Chr2g0151351 Rosa chinensis HOM05D005636 ORTHO05D006912 1.9e-101 373.6 392 53.1
ClCG09G022370 Citrullus lanatus HOM05D005636 ORTHO05D006912 7.3e-101 371.7 368 54.9
Atru.chr1.3606 Acer truncatum HOM05D005636 ORTHO05D006912 3.6e-100 369.4 370 54.6
Lj6g0012077 Lotus japonicus HOM05D005636 ORTHO05D006912 3.6e-100 369.4 374 52.7
Dinv31558 Davidia involucrata HOM05D005636 ORTHO05D006912 6.2e-100 368.6 370 53.0
Cpa.g.sc50.79 Carica papaya HOM05D005636 ORTHO05D006912 8.1e-100 368.2 361 54.3
CSS0038062 Camellia sinensis var. sinensis HOM05D005636 ORTHO05D006912 1.8e-99 367.1 369 54.2
Actinidia11200 Actinidia chinensis HOM05D005636 ORTHO05D006912 3.1e-99 366.3 375 53.1
FAN14G2746 Fragaria x ananassa HOM05D005636 ORTHO05D006912 2.0e-98 363.6 369 54.5
Psat5g112320 Pisum sativum HOM05D005636 ORTHO05D006912 2.6e-98 363.2 376 52.9
FvH4_6g38130 Fragaria vesca HOM05D005636 ORTHO05D006912 3.4e-98 362.8 375 53.9
FAN05G0596 Fragaria x ananassa HOM05D005636 ORTHO05D006912 3.4e-98 362.8 391 52.9
SalBow7G3906 Salvia bowleyana HOM05D005636 ORTHO05D006912 9.9e-98 361.3 369 52.8
Glyma.20G056400 Glycine max HOM05D005636 ORTHO05D006912 1.3e-97 360.9 374 53.5
Phvul.005G057920 Phaseolus vulgaris HOM05D005636 ORTHO05D006912 1.3e-97 360.9 375 53.3
TPR.G37891 Trifolium pratense HOM05D005636 ORTHO05D006912 1.3e-97 360.9 377 53.3
Phvul.002G231100 Phaseolus vulgaris HOM05D005636 ORTHO05D006912 1.7e-97 360.5 376 54.3
Ca_16256_v3 Cicer arietinum L. HOM05D005636 ORTHO05D006912 2.2e-97 360.1 366 52.7
FAN09G4115 Fragaria x ananassa HOM05D005636 ORTHO05D006912 2.2e-97 360.1 391 52.7
CsaV3_6G038020 Cucumis sativus L. HOM05D005636 ORTHO05D006912 2.9e-97 359.8 364 53.3
Lalb_Chr17g0335961 Lupinus albus HOM05D005636 ORTHO05D006912 3.8e-97 359.4 247 68.4
CAN.G585.52 Capsicum annuum HOM05D005636 ORTHO05D006912 1.4e-96 357.5 245 68.6
Prupe.3G171400 Prunus persica HOM05D005636 ORTHO05D006912 4.2e-96 355.9 337 55.5
Sabra05G0153000 Salix brachista HOM05D005636 ORTHO05D006912 4.2e-96 355.9 241 69.7
Medtr1g046360 Medicago truncatula HOM05D005636 ORTHO05D006912 5.4e-96 355.5 376 52.4
Potri.005G201100 Populus trichocarpa HOM05D005636 ORTHO05D006912 7.1e-96 355.1 241 68.9
Rhsim06G0118100 Rhododendron simsii HOM05D005636 ORTHO05D006912 1.2e-95 354.4 414 50.0
Medtr3g079530 Medicago truncatula HOM05D005636 ORTHO05D006912 1.6e-95 354.0 376 52.7
Cfa022913 Carpinus fangiana HOM05D005636 ORTHO05D006912 2.1e-95 353.6 240 70.4
MELO3C014464.2 Cucumis melo HOM05D005636 ORTHO05D006912 2.1e-95 353.6 367 53.4
GSVIVG01000791001 Vitis vinifera HOM05D005636 ORTHO05D006912 2.7e-95 353.2 241 69.7
Lalb_Chr04g0257641 Lupinus albus HOM05D005636 ORTHO05D006912 3.5e-95 352.8 241 68.9
Sopen07g029330 Solanum pennellii HOM05D005636 ORTHO05D006912 1.3e-94 350.9 245 67.3
Solyc07g055980.3 Solanum lycopersicum HOM05D005636 ORTHO05D006912 3.9e-94 349.4 245 66.9
Hma1.2p1_0722F.1_g208750 Hydrangea macrophylla HOM05D005636 ORTHO05D006912 5.1e-94 349.0 359 53.2
HanXRQChr12g0369761 Helianthus annuus HOM05D005636 ORTHO05D006912 1.5e-93 347.4 254 64.6
Nitab4.5_0001675g0040 Nicotiana tabacum HOM05D005636 ORTHO05D006912 1.5e-93 347.4 353 53.3
Sed0000049 Sechium edule HOM05D005636 ORTHO05D006912 4.3e-93 345.9 370 51.9
CARHR169230 Cardamine hirsuta HOM05D005636 ORTHO05D006912 5.6e-93 345.5 366 53.3
Sp5g04030 Schrenkiella parvula HOM05D005636 ORTHO05D006912 9.6e-93 344.7 363 53.4
SGA_v2.0_scaffold130G34360 Striga asiatica HOM05D005636 ORTHO05D006912 9.6e-93 344.7 372 52.2
Aa31LG10G13390 Aethionema arabicum HOM05D005636 ORTHO05D006912 2.1e-92 343.6 251 63.3
Carub.0005s2561 Capsella rubella HOM05D005636 ORTHO05D006912 8.1e-92 341.7 375 50.4
PGSC0003DMG400017343 Solanum tuberosum HOM05D005636 ORTHO05D006912 8.1e-92 341.7 369 52.3
AL5G40630 Arabidopsis lyrata HOM05D005636 ORTHO05D006912 1.1e-91 341.3 360 52.2
BcaB02g07496 Brassica carinata HOM05D005636 ORTHO05D006912 1.8e-91 340.5 245 64.5
Thhalv10006084m.g Eutrema salsugineum HOM05D005636 ORTHO05D006912 1.8e-91 340.5 345 53.0
PGSC0003DMG400007795 Solanum tuberosum HOM05D005636 ORTHO05D006912 2.4e-91 340.1 247 64.8
BcaC08g44944 Brassica carinata HOM05D005636 ORTHO05D006912 3.1e-91 339.7 241 66.0
A07p24370 Brassica napus HOM05D005636 ORTHO05D006912 4.0e-91 339.3 368 51.6
Lsat_1_v5_gn_8_32020 Lactuca sativa HOM05D005636 ORTHO05D006912 4.0e-91 339.3 253 62.8
THA.LOC104802275 Tarenaya hassleriana HOM05D005636 ORTHO05D006912 4.0e-91 339.3 369 51.2
Oeu040028.1 Olea europaea HOM05D005636 ORTHO05D006912 5.3e-91 339.0 368 51.4
CiPaw.03G189200 Carya illinoinensis HOM05D005636 ORTHO05D006912 6.9e-91 338.6 240 68.8
Solyc12g011020.2 Solanum lycopersicum HOM05D005636 ORTHO05D006912 6.9e-91 338.6 245 64.1
Sopen12g006380 Solanum pennellii HOM05D005636 ORTHO05D006912 1.5e-90 337.4 245 64.1
TAR627G0895 Trochodendron aralioides HOM05D005636 ORTHO05D006912 2.0e-90 337.0 249 65.1
Nitab4.5_0005557g0010 Nicotiana tabacum HOM05D005636 ORTHO05D006912 9.9e-90 334.7 368 50.5
BraA07t30084Z Brassica rapa HOM05D005636 ORTHO05D006912 1.3e-89 334.3 368 51.4
Cc05_g09330 Coffea canephora HOM05D005636 ORTHO05D006912 2.9e-89 333.2 313 56.2
THA.LOC104803221 Tarenaya hassleriana HOM05D005636 ORTHO05D006912 2.9e-89 333.2 374 50.5
HanXRQChr13g0387431 Helianthus annuus HOM05D005636 ORTHO05D006912 6.4e-89 332.0 249 62.7
Oeu020065.1 Olea europaea HOM05D005636 ORTHO05D006912 6.4e-89 332.0 371 50.4
C06p25760 Brassica napus HOM05D005636 ORTHO05D006912 8.4e-89 331.6 371 50.7
BolC6t37738H Brassica oleracea HOM05D005636 ORTHO05D006912 8.4e-89 331.6 371 50.7
AT3G58830 Arabidopsis thaliana HOM05D005636 ORTHO05D006912 1.1e-88 331.3 362 50.6
QL08p044016 Quercus lobata HOM05D005636 ORTHO05D006912 2.4e-88 330.1 335 55.5
ECA233G1750 Erigeron canadensis HOM05D005636 ORTHO05D006912 5.5e-88 328.9 240 63.3
SalBow7G1748 Salvia bowleyana HOM05D005636 ORTHO05D006912 9.3e-88 328.2 240 63.3
arahy.Tifrunner.gnm1.ann1.59ND6F Arachis hypogaea HOM05D005636 ORTHO05D006912 3.5e-87 326.2 403 46.9
Nitab4.5_0006934g0010 Nicotiana tabacum HOM05D005636 ORTHO05D006912 4.6e-87 325.9 369 50.4
Nn6g34386 Nelumbo nucifera HOM05D005636 ORTHO05D006912 6.0e-87 325.5 282 56.4
CAN.G164.23 Capsicum annuum HOM05D005636 ORTHO05D006912 6.7e-86 322.0 269 56.9
Peaxi162Scf00111g00031 Petunia axillaris HOM05D005636 ORTHO05D006912 1.5e-85 320.9 352 49.7
Peaxi162Scf00807g00219 Petunia axillaris HOM05D005636 ORTHO05D006912 1.9e-85 320.5 331 50.8
TWI59G0166 Tripterygium wilfordii HOM05D005636 ORTHO05D006912 2.5e-85 320.1 372 48.9
Aqoxy1G01878 Aquilegia oxysepala HOM05D005636 ORTHO05D006912 2.1e-84 317.0 251 57.8
VMungo0540G1884 Vigna mungo HOM05D005636 ORTHO05D006912 3.7e-84 316.2 352 51.7
vmacro12452 Vaccinium macrocarpon HOM05D005636 ORTHO05D006912 1.1e-83 314.7 307 53.7
PSO675G1578 Papaver somniferum HOM05D005636 ORTHO05D006912 9.0e-83 311.6 241 57.3
Migut.M00513 Erythranthe guttata HOM05D005636 ORTHO05D006912 1.2e-82 311.2 372 47.8
PSO541G3223 Papaver somniferum HOM05D005636 ORTHO05D006912 1.2e-82 311.2 241 57.3
MSTRG.6754 Avicennia marina HOM05D005636 ORTHO05D006912 3.2e-80 303.1 349 50.7
VMungo0540G1461 Vigna mungo HOM05D005636 ORTHO05D006912 4.2e-80 302.8 340 50.6
Hma1.2p1_0888F.1_g232810 Hydrangea macrophylla HOM05D005636 ORTHO05D006912 2.3e-78 297.0 330 49.7
BcaC08g44945 Brassica carinata HOM05D005636 ORTHO05D006912 1.1e-77 294.7 371 47.2
ATR0763G116 Amborella trichopoda HOM05D005636 ORTHO05D006912 6.9e-75 285.4 239 56.5
Nitab4.5_0000446g0070 Nicotiana tabacum HOM05D005636 ORTHO05D006912 6.9e-75 285.4 349 46.1
CAN.G732.7 Capsicum annuum HOM05D005636 ORTHO05D006912 9.0e-75 285.0 222 62.6
unitig_0.g2024 Utricularia gibba HOM05D005636 ORTHO05D006912 1.2e-74 284.6 279 51.3
SEGI_36348 Sequoiadendron giganteum HOM05D005636 ORTHO05D006912 3.2e-72 276.6 342 45.9
CDE08G0457 Ceratophyllum demersum HOM05D005636 ORTHO05D006912 2.7e-71 273.5 231 55.4
Sc14g0000770 Simmondsia chinensis HOM05D005636 ORTHO05D006912 4.3e-69 266.2 234 53.4
AUR62033992 Chenopodium quinoa HOM05D005636 ORTHO05D006912 9.7e-69 265.0 232 54.7
Os01g0796500 Oryza sativa ssp. japonica HOM05D005636 ORTHO05D006912 1.6e-68 264.2 243 52.3
EL10Ac8g19235 Beta vulgaris HOM05D005636 ORTHO05D006912 2.2e-68 263.8 249 53.0
AUR62027489 Chenopodium quinoa HOM05D005636 ORTHO05D006912 1.1e-67 261.5 232 54.3
arahy.Tifrunner.gnm1.ann1.LGDT7B Arachis hypogaea HOM05D005636 ORTHO05D006912 5.9e-66 255.8 184 67.4
Ah.04g158730 Amaranthus hybridus HOM05D005636 ORTHO05D006912 1.7e-65 254.2 236 50.8
AagrBONN_evm.TU.Sc2ySwM_228.4819 Anthoceros agrestis HOM05D005636 ORTHO05D006912 1.4e-64 251.1 238 50.8
SGA_v2.0_scaffold70G23671 Striga asiatica HOM05D005636 ORTHO05D006912 7.9e-63 245.4 376 40.2
CANSAT64G2722 Cannabis sativa HOM05D005636 ORTHO05D006912 8.8e-62 241.9 170 69.4
Pp3c4_17380 Physcomitrium patens HOM05D005636 ORTHO05D006912 1.1e-61 241.5 229 49.8
SMO367G0867 Selaginella moellendorffii HOM05D005636 ORTHO05D006912 1.1e-61 241.5 232 50.4
Mapoly0095s0041 Marchantia polymorpha HOM05D005636 ORTHO05D006912 2.6e-61 240.4 246 46.7
MSTRG.14295 Avicennia marina HOM05D005636 ORTHO05D006912 4.4e-61 239.6 170 63.5
Haze_13492 Corylus avellana HOM05D005636 ORTHO05D006912 2.8e-60 236.9 243 52.7
Actinidia32519 Actinidia chinensis HOM05D005636 ORTHO05D006912 1.1e-56 224.9 267 47.9
HPP92_010206 Vanilla planifolia HOM05D002349 ORTHO05D002464 5.5e-56 222.6 218 51.8
Lj1A625T29 Lonicera japonica HOM05D005636 ORTHO05D006912 2.8e-52 210.3 285 44.6
CBR_g66789 Chara braunii HOM05D005636 ORTHO05D006912 2.4e-51 207.2 198 50.0
Cre04.g219900 Chlamydomonas reinhardtii HOM05D005636 ORTHO05D006912 2.9e-49 200.3 249 40.6
RcHm_v2.0_Chr2g0151251 Rosa chinensis HOM05D005636 ORTHO05D006912 4.0e-38 163.3 96 78.1
DCAR_009796 Daucus carota HOM05D005636 ORTHO05D006912 1.3e-36 158.3 375 32.0
MCO16G670 Micromonas commoda HOM05D005636 ORTHO05D006912 9.1e-35 152.1 183 39.3
PRCOL_00003225 Prasinoderma coloniale HOM05D005636 ORTHO05D006912 1.5e-32 144.8 236 34.3
AagrBONN_evm.TU.Sc2ySwM_344.2384 Anthoceros agrestis HOM05D005636 ORTHO05D006912 7.2e-32 142.5 126 52.4
Zm00001eb150880 Zea mays HOM05D005636 ORTHO05D006912 2.0e-26 124.4 152 44.1
CAN.G44.13 Capsicum annuum HOM05D005636 ORTHO05D006912 6.8e-22 109.4 61 83.6
AagrBONN_evm.TU.Sc2ySwM_344.2381 Anthoceros agrestis HOM05D005636 ORTHO05D006912 4.1e-19 100.1 77 57.1
CAN.G1530.4 Capsicum annuum HOM05D005636 ORTHO05D017742 2.5e-16 90.9 60 71.7
A04p02350 Brassica napus HOM05D005636 ORTHO05D006912 3.0e-09 67.4 53 60.4
VMungo0720G3119 Vigna mungo HOM05D000196 ORTHO05D001288 3.6e-07 60.5 38 76.3


User provided reference genes

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