Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR142G4366 Punica granatum HOM05D004899 ORTHO05D006580 1.7e-203 712.6 394 100.0
CiPaw.08G118600 Carya illinoinensis HOM05D004899 ORTHO05D006580 3.2e-170 602.1 394 84.0
Eucgr.B02154 Eucalyptus grandis HOM05D004899 ORTHO05D006580 5.4e-170 601.3 394 85.8
Potri.013G047800 Populus trichocarpa HOM05D004899 ORTHO05D006580 1.2e-169 600.1 394 83.2
Potri.019G020000 Populus trichocarpa HOM05D004899 ORTHO05D006580 2.3e-168 595.9 394 82.7
Dinv06242 Davidia involucrata HOM05D004899 ORTHO05D006580 3.0e-168 595.5 394 84.3
QL03p029772 Quercus lobata HOM05D004899 ORTHO05D006580 1.5e-167 593.2 410 82.2
ClCG11G010490 Citrullus lanatus HOM05D004899 ORTHO05D006580 1.2e-166 590.1 394 83.5
Prupe.6G350900 Prunus persica HOM05D004899 ORTHO05D006580 2.1e-166 589.3 394 83.5
MELO3C008694.2 Cucumis melo HOM05D004899 ORTHO05D006580 4.7e-166 588.2 394 83.5
FvH4_6g01740 Fragaria vesca HOM05D004899 ORTHO05D006580 4.7e-166 588.2 394 82.2
Manes.08G140200 Manihot esculenta HOM05D004899 ORTHO05D006580 4.7e-166 588.2 394 83.5
CsaV3_2G009880 Cucumis sativus L. HOM05D004899 ORTHO05D006580 6.2e-166 587.8 394 83.2
FAN14G2287 Fragaria x ananassa HOM05D004899 ORTHO05D006580 8.1e-166 587.4 394 82.2
FAN14G4075 Fragaria x ananassa HOM05D004899 ORTHO05D006580 8.1e-166 587.4 394 82.2
CSS0003371 Camellia sinensis var. sinensis HOM05D004899 ORTHO05D006580 1.8e-165 586.3 394 82.7
CANSAT54G0581 Cannabis sativa HOM05D004899 ORTHO05D006580 1.8e-165 586.3 394 82.7
TWI36G0265 Tripterygium wilfordii HOM05D004899 ORTHO05D006580 2.3e-165 585.9 394 81.2
Thecc.05G269900 Theobroma cacao HOM05D004899 ORTHO05D006580 5.2e-165 584.7 394 81.2
FAN05G0331 Fragaria x ananassa HOM05D004899 ORTHO05D006580 1.2e-164 583.6 394 81.5
FAN05G3121 Fragaria x ananassa HOM05D004899 ORTHO05D006580 1.2e-164 583.6 394 81.5
RcHm_v2.0_Chr3g0449481 Rosa chinensis HOM05D004899 ORTHO05D006580 1.5e-164 583.2 394 82.2
Actinidia34758 Actinidia chinensis HOM05D004899 ORTHO05D006580 2.6e-164 582.4 394 82.7
FAN09G4068 Fragaria x ananassa HOM05D004899 ORTHO05D006580 3.4e-164 582.0 394 81.5
Sabra19G0032200 Salix brachista HOM05D004899 ORTHO05D006580 5.8e-164 581.3 394 82.7
Duzib106G1539 Durio zibethinus HOM05D004899 ORTHO05D006580 7.6e-164 580.9 394 80.5
Sed0011238 Sechium edule HOM05D004899 ORTHO05D006580 2.9e-163 578.9 397 82.1
MD04G1231200 Malus domestica HOM05D004899 ORTHO05D006580 4.1e-162 575.1 395 82.3
GSVIVG01023441001 Vitis vinifera HOM05D004899 ORTHO05D006580 7.1e-162 574.3 394 81.2
PGSC0003DMG400023503 Solanum tuberosum HOM05D004899 ORTHO05D006580 3.9e-160 568.5 394 81.0
TAR362G0172 Trochodendron aralioides HOM05D004899 ORTHO05D006580 5.1e-160 568.2 394 80.5
Rhsim09G0133700 Rhododendron simsii HOM05D004899 ORTHO05D006580 8.6e-160 567.4 394 80.5
Gohir.A11G246300 Gossypium hirsutum HOM05D004899 ORTHO05D006580 1.1e-159 567.0 394 79.2
Solyc05g054950.2 Solanum lycopersicum HOM05D004899 ORTHO05D006580 1.9e-159 566.2 394 80.7
CAN.G1465.15 Capsicum annuum HOM05D004899 ORTHO05D006580 2.5e-159 565.8 394 81.0
Sopen05g033410 Solanum pennellii HOM05D004899 ORTHO05D006580 2.5e-159 565.8 394 80.7
Gohir.D11G256500 Gossypium hirsutum HOM05D004899 ORTHO05D006580 9.6e-159 563.9 394 79.4
Gorai.007G274800 Gossypium raimondii HOM05D004899 ORTHO05D006580 1.6e-158 563.1 394 79.4
Nn1g02931 Nelumbo nucifera HOM05D004899 ORTHO05D006580 1.6e-158 563.1 394 80.2
Peaxi162Scf00015g02911 Petunia axillaris HOM05D004899 ORTHO05D006580 2.1e-158 562.8 394 79.9
Atru.chr2.1001 Acer truncatum HOM05D004899 ORTHO05D006580 1.8e-157 559.7 370 84.9
Lj2A44T81 Lonicera japonica HOM05D004899 ORTHO05D006580 1.2e-156 557.0 438 73.5
HanXRQChr08g0216941 Helianthus annuus HOM05D004899 ORTHO05D006580 2.0e-156 556.2 394 77.2
ECA233G1223 Erigeron canadensis HOM05D004899 ORTHO05D006580 2.6e-156 555.8 394 74.9
Sc20g0000690 Simmondsia chinensis HOM05D004899 ORTHO05D006580 3.4e-156 555.4 394 77.2
MBI07_g12932_MAGBIO Magnolia biondii HOM05D004899 ORTHO05D006580 4.4e-156 555.1 395 80.5
Cc02_g08720 Coffea canephora HOM05D004899 ORTHO05D006580 3.8e-155 552.0 404 78.7
MSTRG.8229 Avicennia marina HOM05D004899 ORTHO05D006580 4.9e-155 551.6 392 79.1
Migut.F01538 Erythranthe guttata HOM05D004899 ORTHO05D006580 4.9e-155 551.6 394 78.4
Hund22166 Selenicereus undatus HOM05D004899 ORTHO05D006580 8.4e-155 550.8 394 75.6
Lsat_1_v5_gn_8_25181 Lactuca sativa HOM05D004899 ORTHO05D006580 5.4e-154 548.1 396 76.5
Ciclev10024089m.g Citrus clementina HOM05D004899 ORTHO05D006580 2.7e-153 545.8 370 83.5
AL3G14410 Arabidopsis lyrata HOM05D004899 ORTHO05D006580 3.5e-153 545.4 393 73.3
PSO674G0057 Papaver somniferum HOM05D004899 ORTHO05D006580 3.5e-153 545.4 394 77.7
Sp3g03310 Schrenkiella parvula HOM05D004899 ORTHO05D006580 3.5e-153 545.4 393 73.3
COL.COLO4_15501 Corchorus olitorius HOM05D004899 ORTHO05D006580 1.0e-152 543.9 378 79.4
Carub.0003s0362 Capsella rubella HOM05D004899 ORTHO05D006580 1.7e-152 543.1 393 72.8
SalBow6G5574 Salvia bowleyana HOM05D004899 ORTHO05D006580 5.1e-152 541.6 417 74.8
AT3G04460 Arabidopsis thaliana HOM05D004899 ORTHO05D006580 1.1e-151 540.4 393 72.8
Aqoxy5G00161 Aquilegia oxysepala HOM05D004899 ORTHO05D006580 3.3e-151 538.9 394 78.2
Thhalv10020878m.g Eutrema salsugineum HOM05D004899 ORTHO05D006580 7.3e-151 537.7 395 72.2
EL10Ac4g08990 Beta vulgaris HOM05D004899 ORTHO05D006580 1.4e-149 533.5 394 72.1
THA.LOC104820770 Tarenaya hassleriana HOM05D004899 ORTHO05D006580 1.4e-149 533.5 392 70.4
AUR62040914 Chenopodium quinoa HOM05D004899 ORTHO05D006580 3.1e-149 532.3 394 69.0
Aa31LG5G14890 Aethionema arabicum HOM05D004899 ORTHO05D006580 4.0e-149 531.9 393 73.3
VMungo0540G0495 Vigna mungo HOM05D004899 ORTHO05D006580 2.0e-148 529.6 394 76.6
SGA_v2.0_scaffold426G51496 Striga asiatica HOM05D004899 ORTHO05D006580 2.6e-148 529.3 394 76.1
A03p33610 Brassica napus HOM05D004899 ORTHO05D006580 9.9e-148 527.3 393 71.5
arahy.Tifrunner.gnm1.ann1.VXFY9N Arachis hypogaea HOM05D004899 ORTHO05D006580 1.3e-147 526.9 398 76.1
arahy.Tifrunner.gnm1.ann1.A8VMLZ Arachis hypogaea HOM05D004899 ORTHO05D006580 2.2e-147 526.2 398 76.1
BolC3t16350H Brassica oleracea HOM05D004899 ORTHO05D006580 1.1e-146 523.9 393 71.2
BraA03t12536Z Brassica rapa HOM05D004899 ORTHO05D006580 2.4e-146 522.7 398 70.9
Phvul.006G104800 Phaseolus vulgaris HOM05D004899 ORTHO05D006580 7.1e-146 521.2 394 75.6
BcaC01g04376 Brassica carinata HOM05D004899 ORTHO05D006580 9.3e-146 520.8 393 70.7
C03p40810 Brassica napus HOM05D004899 ORTHO05D006580 9.3e-146 520.8 393 70.7
Glyma.19G247700 Glycine max HOM05D004899 ORTHO05D006580 2.1e-145 519.6 394 75.9
Glyma.03G250100 Glycine max HOM05D004899 ORTHO05D006580 2.7e-145 519.2 394 76.1
A05p43040 Brassica napus HOM05D004899 ORTHO05D006580 1.0e-144 517.3 393 67.7
Zm00001eb046420 Zea mays HOM05D004899 ORTHO05D006580 1.5e-143 513.5 395 73.7
Os10g0467200 Oryza sativa ssp. japonica HOM05D004899 ORTHO05D006580 1.6e-142 510.0 395 73.4
Ca_11390_v3 Cicer arietinum L. HOM05D004899 ORTHO05D006580 1.4e-141 506.9 394 74.9
BcaB04g19333 Brassica carinata HOM05D004899 ORTHO05D006580 1.8e-141 506.5 377 71.1
DCAR_023087 Daucus carota HOM05D004899 ORTHO05D006580 2.6e-140 502.7 393 73.5
Nitab4.5_0003965g0030 Nicotiana tabacum HOM05D004899 ORTHO05D006580 1.7e-139 500.0 394 74.1
Lj1g0026343 Lotus japonicus HOM05D004899 ORTHO05D006580 2.4e-138 496.1 413 70.7
ATR0736G049 Amborella trichopoda HOM05D004899 ORTHO05D006580 1.1e-135 487.3 395 71.1
TPR.G10414 Trifolium pratense HOM05D004899 ORTHO05D006580 3.3e-135 485.7 394 71.6
CDE05G2618 Ceratophyllum demersum HOM05D004899 ORTHO05D006580 7.4e-135 484.6 398 70.9
Lalb_Chr04g0253351 Lupinus albus HOM05D004899 ORTHO05D006580 6.2e-134 481.5 399 70.4
AUR62004828 Chenopodium quinoa HOM05D004899 ORTHO05D006580 2.4e-133 479.6 358 71.8
vmacro10377 Vaccinium macrocarpon HOM05D004899 ORTHO05D006580 3.4e-132 475.7 426 66.7
unitig_899.g15065 Utricularia gibba HOM05D004899 ORTHO05D006580 2.1e-129 466.5 401 69.6
BcaC05g30197 Brassica carinata HOM05D004899 ORTHO05D006580 2.5e-127 459.5 403 63.0
Nitab4.5_0000914g0090 Nicotiana tabacum HOM05D004899 ORTHO05D006580 1.1e-125 454.1 394 71.1
BcaC05g29943 Brassica carinata HOM05D004899 ORTHO05D006580 4.1e-125 452.2 392 62.5
Medtr1g116380 Medicago truncatula HOM05D004899 ORTHO05D006580 1.3e-120 437.2 372 69.6
Ah.06g191810 Amaranthus hybridus HOM05D004899 ORTHO05D006580 3.8e-115 419.1 394 57.9
C05p62800 Brassica napus HOM05D004899 ORTHO05D006580 3.7e-110 402.5 380 60.3
Psat0s1997g0040 Pisum sativum HOM05D004899 ORTHO05D006580 5.0e-107 392.1 346 69.7
HPP92_008536 Vanilla planifolia HOM05D004899 ORTHO05D006580 3.7e-102 375.9 287 77.0
Cpa.g.sc306.4 Carica papaya HOM05D004899 ORTHO05D006580 3.8e-99 365.9 394 55.8
SMO367G0182 Selaginella moellendorffii HOM05D004899 ORTHO05D006580 1.5e-98 364.0 392 53.1
Haze_04413 Corylus avellana HOM05D004899 ORTHO05D006580 2.4e-93 346.7 328 67.7
AagrBONN_evm.TU.Sc2ySwM_228.2413 Anthoceros agrestis HOM05D004899 ORTHO05D006580 9.1e-93 344.7 396 50.0
CARHR078590 Cardamine hirsuta HOM05D004899 ORTHO05D006580 4.2e-90 335.9 247 71.3
Pp3c17_6400 Physcomitrium patens HOM05D004899 ORTHO05D006580 6.1e-89 332.0 398 49.2
MD12G1249500 Malus domestica HOM05D004899 ORTHO05D006580 3.1e-77 293.1 302 56.3
Mapoly0097s0077 Marchantia polymorpha HOM05D004899 ORTHO05D006580 6.6e-75 285.4 295 53.9
SHI31416 Sapria himalayana HOM05D004899 ORTHO05D006580 5.2e-72 275.8 394 53.3
RhsimUnG0045000 Rhododendron simsii HOM05D004899 ORTHO05D006580 6.8e-72 275.4 378 45.8
CANSAT80G2786 Cannabis sativa HOM05D004899 ORTHO05D006580 6.4e-70 268.9 182 73.6
CANSAT80G2333 Cannabis sativa HOM05D004899 ORTHO05D006580 1.9e-69 267.3 182 73.1
Oeu050631.1 Olea europaea HOM05D004899 ORTHO05D006580 3.2e-61 240.0 292 50.3
Hma1.2p1_1336F.1_g276500 Hydrangea macrophylla HOM05D004899 ORTHO05D006580 1.4e-53 214.5 122 87.7
CBR_g51833 Chara braunii HOM05D004899 ORTHO05D006580 1.7e-51 207.6 540 32.6
MD00G1148800 Malus domestica HOM05D004899 ORTHO05D006580 1.9e-50 204.1 205 57.1
CARHR078600 Cardamine hirsuta HOM05D004899 ORTHO05D006580 8.1e-49 198.7 151 72.8
Cre06.g263602 Chlamydomonas reinhardtii HOM05D004899 ORTHO05D006580 1.3e-46 191.4 417 31.7
TPR.G8890 Trifolium pratense HOM05D001167 ORTHO05D001054 1.9e-45 187.6 165 58.8
BolC5t34933H Brassica oleracea HOM05D004899 ORTHO05D006580 1.3e-43 181.4 125 75.2
MCO09G554 Micromonas commoda HOM05D004899 ORTHO05D006580 2.8e-41 173.7 407 33.2
C07p09790 Brassica napus HOM05D004899 ORTHO05D006580 6.2e-41 172.6 166 56.6
PRCOL_00005674 Prasinoderma coloniale HOM05D004899 ORTHO05D006580 2.1e-36 157.5 396 30.3
BraA05t23048Z Brassica rapa HOM05D004899 ORTHO05D006580 4.3e-34 149.8 92 80.4
C01p22380 Brassica napus HOM05D004899 ORTHO05D006580 1.2e-31 141.7 137 58.4
Oeu040904.1 Olea europaea HOM05D004899 ORTHO05D006580 7.1e-29 132.5 71 83.1
Cc06_g01540 Coffea canephora HOM05D004899 ORTHO05D006580 2.1e-28 131.0 125 63.2
BcaC06g35909 Brassica carinata HOM05D004899 ORTHO05D006580 3.0e-27 127.1 151 49.0
Cc05_g01300 Coffea canephora HOM05D004899 ORTHO05D006580 3.0e-27 127.1 111 64.0
MD08G1214200 Malus domestica HOM05D004899 ORTHO05D006580 3.3e-26 123.6 71 85.9
SEGI_08581 Sequoiadendron giganteum HOM05D004899 ORTHO05D006580 4.3e-26 123.2 148 45.3
BolC6t38557H Brassica oleracea HOM05D004899 ORTHO05D006580 1.1e-24 118.6 130 52.3
SEGI_05516 Sequoiadendron giganteum HOM05D004899 ORTHO05D006580 3.1e-24 117.1 88 67.0
BraA04t16133Z Brassica rapa HOM05D004899 ORTHO05D006580 5.3e-24 116.3 115 56.5
Cc06_g14670 Coffea canephora HOM05D004899 ORTHO05D006580 4.5e-23 113.2 178 53.9
Psat3g057720 Pisum sativum HOM05D004899 ORTHO05D006580 1.1e-16 92.0 50 76.0
FAN18G0756 Fragaria x ananassa HOM05D004899 ORTHO05D019122 7.6e-15 85.9 80 60.0
BcaC09g50711 Brassica carinata HOM05D004899 ORTHO05D006580 1.3e-14 85.1 121 46.3
SEGI_06182 Sequoiadendron giganteum HOM05D004899 ORTHO05D006580 4.9e-14 83.2 48 66.7
SalBow6G6423 Salvia bowleyana HOM05D031023 ORTHO05D019122 3.2e-13 80.5 46 82.6
FvH4_3g30700 Fragaria vesca HOM05D004899 ORTHO05D019122 2.1e-12 77.8 51 76.5
FvH4_4g13630 Fragaria vesca HOM05D004899 ORTHO05D019122 1.5e-10 71.6 44 77.3
FAN05G0601 Fragaria x ananassa HOM05D004899 ORTHO05D006580 3.3e-10 70.5 77 41.6
Haze_02280 Corylus avellana HOM05D000013 ORTHO05D000689 1.6e-09 68.2 35 94.3
Psat3g113200 Pisum sativum HOM05D004899 ORTHO05D034818 3.1e-08 63.9 47 61.7
Cc04_g06470 Coffea canephora HOM05D004899 ORTHO05D034818 9.0e-08 62.4 38 81.6
BolC7t41419H Brassica oleracea HOM05D004899 ORTHO05D006580 8.5e-06 55.8 64 46.9


User provided reference genes

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