Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR142G4196 Punica granatum HOM05D004719 ORTHO05D005519 1.2e-100 369.8 185 100.0
PGR142G1718 Punica granatum HOM05D004719 ORTHO05D005519 2.1e-92 342.4 210 84.8
MD07G1283600 Malus domestica HOM05D004719 ORTHO05D005519 1.0e-49 200.7 229 52.0
PSO170G2586 Papaver somniferum HOM05D004719 ORTHO05D005519 1.0e-49 200.7 220 54.1
PSO063G4149 Papaver somniferum HOM05D004719 ORTHO05D005519 3.8e-49 198.7 220 53.6
vmacro10099 Vaccinium macrocarpon HOM05D004719 ORTHO05D005519 2.5e-48 196.1 225 53.8
Dinv35299 Davidia involucrata HOM05D004719 ORTHO05D005519 2.1e-47 193.0 197 55.3
Cfa016352 Carpinus fangiana HOM05D004719 ORTHO05D005519 7.9e-47 191.0 234 52.1
Gohir.D11G014000 Gossypium hirsutum HOM05D004719 ORTHO05D005519 2.3e-46 189.5 224 51.8
Manes.06G156000 Manihot esculenta HOM05D004719 ORTHO05D005519 2.3e-46 189.5 205 52.2
Prupe.2G306000 Prunus persica HOM05D004719 ORTHO05D005519 2.3e-46 189.5 231 52.8
Haze_00101 Corylus avellana HOM05D004719 ORTHO05D005519 3.0e-46 189.1 240 50.4
Lj1g0014949 Lotus japonicus HOM05D004719 ORTHO05D005519 3.0e-46 189.1 214 50.9
CiPaw.06G006600 Carya illinoinensis HOM05D004719 ORTHO05D005519 3.9e-46 188.7 212 52.8
TAR374G0131 Trochodendron aralioides HOM05D004719 ORTHO05D005519 5.1e-46 188.3 220 51.4
Gohir.A11G013800 Gossypium hirsutum HOM05D004719 ORTHO05D005519 8.7e-46 187.6 224 51.8
Gorai.007G014400 Gossypium raimondii HOM05D004719 ORTHO05D005519 1.1e-45 187.2 224 51.3
TAR333G0005 Trochodendron aralioides HOM05D004719 ORTHO05D005519 1.1e-45 187.2 224 51.3
Duzib084G0320 Durio zibethinus HOM05D004719 ORTHO05D005519 2.5e-45 186.0 228 50.0
Sc13g0009490 Simmondsia chinensis HOM05D004719 ORTHO05D005519 2.5e-45 186.0 144 66.0
TWI23G0029 Tripterygium wilfordii HOM05D004719 ORTHO05D005519 2.5e-45 186.0 223 51.1
Ah.07g206120 Amaranthus hybridus HOM05D004719 ORTHO05D005519 3.3e-45 185.7 223 49.3
EL10Ac3g05361 Beta vulgaris HOM05D004719 ORTHO05D005519 3.3e-45 185.7 144 63.9
MD01G1213900 Malus domestica HOM05D004719 ORTHO05D005519 3.3e-45 185.7 232 50.0
AUR62021055 Chenopodium quinoa HOM05D004719 ORTHO05D005519 5.7e-45 184.9 144 65.3
CSS0006896 Camellia sinensis var. sinensis HOM05D004719 ORTHO05D005519 7.4e-45 184.5 227 50.2
CSS0042605 Camellia sinensis var. sinensis HOM05D004719 ORTHO05D005519 7.4e-45 184.5 227 50.2
Rhsim09G0203300 Rhododendron simsii HOM05D004719 ORTHO05D005519 9.7e-45 184.1 242 48.3
Actinidia31859 Actinidia chinensis HOM05D004719 ORTHO05D005519 1.3e-44 183.7 195 55.4
Nn1g01780 Nelumbo nucifera HOM05D004719 ORTHO05D005519 1.6e-44 183.3 224 50.9
Eucgr.A02672 Eucalyptus grandis HOM05D004719 ORTHO05D005519 2.2e-44 183.0 186 54.8
Lj1C1011G7 Lonicera japonica HOM05D004719 ORTHO05D005519 2.2e-44 183.0 130 68.5
TWI14G0874 Tripterygium wilfordii HOM05D004719 ORTHO05D005519 3.7e-44 182.2 222 49.5
Duzib068G0142 Durio zibethinus HOM05D004719 ORTHO05D005519 1.4e-43 180.3 221 49.3
CANSAT21G2536 Cannabis sativa HOM05D004719 ORTHO05D005519 2.4e-43 179.5 197 53.8
Lalb_Chr23g0271411 Lupinus albus HOM05D004719 ORTHO05D005519 5.3e-43 178.3 216 50.0
AUR62031477 Chenopodium quinoa HOM05D004719 ORTHO05D005519 6.9e-43 177.9 226 47.3
Nn7g37372 Nelumbo nucifera HOM05D004719 ORTHO05D005519 6.9e-43 177.9 222 50.9
Cc02_g02010 Coffea canephora HOM05D004719 ORTHO05D005519 2.0e-42 176.4 221 49.3
Glyma.04G239200 Glycine max HOM05D004719 ORTHO05D005519 2.0e-42 176.4 193 56.0
TWI39G0409 Tripterygium wilfordii HOM05D004719 ORTHO05D005519 2.0e-42 176.4 222 49.1
Aqoxy5G04028 Aquilegia oxysepala HOM05D004719 ORTHO05D005519 3.4e-42 175.6 224 46.4
SGA_v2.0_scaffold192G40593 Striga asiatica HOM05D004719 ORTHO05D005519 4.5e-42 175.3 160 58.1
COL.COLO4_08254 Corchorus olitorius HOM05D004719 ORTHO05D005519 1.0e-41 174.1 146 61.0
Duzib205G0172 Durio zibethinus HOM05D004719 ORTHO05D005519 1.0e-41 174.1 199 50.3
Ciclev10005830m.g Citrus clementina HOM05D004719 ORTHO05D005519 1.3e-41 173.7 229 45.4
Hma1.2p1_0142F.1_g064100 Hydrangea macrophylla HOM05D004719 ORTHO05D005519 1.7e-41 173.3 131 66.4
SalBow4G0130 Salvia bowleyana HOM05D004719 ORTHO05D005519 1.7e-41 173.3 202 48.5
QL09p011210 Quercus lobata HOM05D004719 ORTHO05D005519 2.2e-41 172.9 143 60.1
RcHm_v2.0_Chr1g0379961 Rosa chinensis HOM05D004719 ORTHO05D005519 2.9e-41 172.6 234 45.7
Potri.012G033300 Populus trichocarpa HOM05D004719 ORTHO05D005519 6.5e-41 171.4 224 47.3
PGR042G1451 Punica granatum HOM05D004719 ORTHO05D005519 8.5e-41 171.0 204 51.0
Phvul.008G159900 Phaseolus vulgaris HOM05D004719 ORTHO05D005519 1.1e-40 170.6 208 49.5
Hma1.2p1_0327F.1_g126670 Hydrangea macrophylla HOM05D004719 ORTHO05D005519 1.4e-40 170.2 195 51.3
SalBow4G0254 Salvia bowleyana HOM05D004719 ORTHO05D005519 1.4e-40 170.2 202 48.0
Thecc.03G191400 Theobroma cacao HOM05D004719 ORTHO05D005519 1.9e-40 169.9 228 47.4
Medtr3g090640 Medicago truncatula HOM05D004719 ORTHO05D005519 4.2e-40 168.7 144 61.8
Oeu049096.1 Olea europaea HOM05D004719 ORTHO05D005519 5.5e-40 168.3 209 47.4
Hma1.2p1_1891F.1_g306690 Hydrangea macrophylla HOM05D004719 ORTHO05D005519 9.4e-40 167.5 173 55.5
Atru.chr1.287 Acer truncatum HOM05D004719 ORTHO05D005519 1.2e-39 167.2 233 44.2
arahy.Tifrunner.gnm1.ann1.A0EQPQ Arachis hypogaea HOM05D004719 ORTHO05D005519 1.2e-39 167.2 200 49.0
CsaV3_5G000780 Cucumis sativus L. HOM05D004719 ORTHO05D005519 1.6e-39 166.8 227 44.5
Psat5g080520 Pisum sativum HOM05D004719 ORTHO05D005519 1.6e-39 166.8 208 49.0
MSTRG.8686 Avicennia marina HOM05D004719 ORTHO05D005519 2.1e-39 166.4 144 59.7
Cpa.g.sc3.37 Carica papaya HOM05D004719 ORTHO05D005519 2.1e-39 166.4 228 46.1
MSTRG.27052 Avicennia marina HOM05D004719 ORTHO05D005519 2.7e-39 166.0 169 52.7
MELO3C005862.2 Cucumis melo HOM05D004719 ORTHO05D005519 3.6e-39 165.6 226 44.2
ClCG01G000680 Citrullus lanatus HOM05D004719 ORTHO05D005519 4.6e-39 165.2 136 61.8
Glyma.06G124600 Glycine max HOM05D004719 ORTHO05D005519 4.6e-39 165.2 193 54.4
Potri.015G023600 Populus trichocarpa HOM05D004719 ORTHO05D005519 4.6e-39 165.2 143 58.7
FAN06G4721 Fragaria x ananassa HOM05D004719 ORTHO05D005519 6.1e-39 164.9 231 44.2
Sed0016292 Sechium edule HOM05D004719 ORTHO05D005519 6.1e-39 164.9 212 47.2
arahy.Tifrunner.gnm1.ann1.YXX8CM Arachis hypogaea HOM05D004719 ORTHO05D005519 1.0e-38 164.1 200 49.0
CAN.G204.6 Capsicum annuum HOM05D004719 ORTHO05D005519 1.4e-38 163.7 143 58.7
DCAR_020296 Daucus carota HOM05D004719 ORTHO05D005519 1.4e-38 163.7 200 49.5
FAN10G3127 Fragaria x ananassa HOM05D004719 ORTHO05D005519 1.4e-38 163.7 234 44.4
FAN03G2418 Fragaria x ananassa HOM05D004719 ORTHO05D005519 2.3e-38 162.9 235 44.3
THA.LOC104800282 Tarenaya hassleriana HOM05D004719 ORTHO05D005519 2.3e-38 162.9 225 45.3
ATR0661G055 Amborella trichopoda HOM05D004719 ORTHO05D005519 3.0e-38 162.5 216 49.1
Gohir.D09G178000 Gossypium hirsutum HOM05D004719 ORTHO05D005519 3.9e-38 162.2 192 50.0
Ca_16667_v3 Cicer arietinum L. HOM05D004719 ORTHO05D005519 5.1e-38 161.8 144 59.0
Aa31LG3G9210 Aethionema arabicum HOM05D004719 ORTHO05D005519 6.7e-38 161.4 227 41.9
FvH4_7g30890 Fragaria vesca HOM05D004719 ORTHO05D005519 6.7e-38 161.4 233 43.8
Peaxi162Scf00618g00530 Petunia axillaris HOM05D004719 ORTHO05D005519 6.7e-38 161.4 144 58.3
Sp6g15480 Schrenkiella parvula HOM05D004719 ORTHO05D005519 6.7e-38 161.4 230 43.9
Thhalv10014603m.g Eutrema salsugineum HOM05D004719 ORTHO05D005519 8.8e-38 161.0 229 42.4
FAN01G1522 Fragaria x ananassa HOM05D004719 ORTHO05D005519 1.1e-37 160.6 240 43.3
unitig_747.g21854 Utricularia gibba HOM05D004719 ORTHO05D005519 2.0e-37 159.8 217 42.9
Oeu009271.1 Olea europaea HOM05D004719 ORTHO05D005519 2.6e-37 159.5 231 44.6
Sed0024250 Sechium edule HOM05D004719 ORTHO05D005519 2.6e-37 159.5 219 43.8
Gorai.006G200100 Gossypium raimondii HOM05D004719 ORTHO05D005519 4.4e-37 158.7 192 49.5
PGSC0003DMG400028901 Solanum tuberosum HOM05D004719 ORTHO05D005519 4.4e-37 158.7 196 49.0
THA.LOC104811935 Tarenaya hassleriana HOM05D004719 ORTHO05D005519 4.4e-37 158.7 226 43.4
A03p15190 Brassica napus HOM05D004719 ORTHO05D005519 5.7e-37 158.3 222 44.6
HPP92_008641 Vanilla planifolia HOM05D004719 ORTHO05D005519 5.7e-37 158.3 181 51.4
Phvul.009G136700 Phaseolus vulgaris HOM05D004719 ORTHO05D005519 7.4e-37 157.9 201 50.7
BraA03t10813Z Brassica rapa HOM05D004719 ORTHO05D005519 2.2e-36 156.4 222 44.1
Nitab4.5_0000472g0190 Nicotiana tabacum HOM05D004719 ORTHO05D005519 4.8e-36 155.2 205 45.9
Nitab4.5_0001331g0150 Nicotiana tabacum HOM05D004719 ORTHO05D005519 4.8e-36 155.2 205 46.3
ECA238G1719 Erigeron canadensis HOM05D000316 ORTHO05D001978 8.2e-36 154.5 204 46.6
Gohir.A09G183300 Gossypium hirsutum HOM05D004719 ORTHO05D005519 1.1e-35 154.1 191 48.2
BcaNung06632 Brassica carinata HOM05D004719 ORTHO05D005519 1.4e-35 153.7 217 43.8
C03p17720 Brassica napus HOM05D004719 ORTHO05D005519 1.4e-35 153.7 217 43.8
BcaB08g35695 Brassica carinata HOM05D004719 ORTHO05D005519 1.8e-35 153.3 214 43.9
Lsat_1_v5_gn_2_134381 Lactuca sativa HOM05D004719 ORTHO05D005519 1.8e-35 153.3 181 48.1
BcaC01g06246 Brassica carinata HOM05D004719 ORTHO05D005519 2.4e-35 152.9 160 51.9
HanXRQChr14g0462731 Helianthus annuus HOM05D004719 ORTHO05D005519 4.1e-35 152.1 203 44.8
FAN06G1194 Fragaria x ananassa HOM05D004719 ORTHO05D005519 9.1e-35 151.0 154 53.2
Migut.F00251 Erythranthe guttata HOM05D004719 ORTHO05D005519 1.5e-34 150.2 176 48.3
PGSC0003DMG400009067 Solanum tuberosum HOM05D004719 ORTHO05D005519 2.0e-34 149.8 144 54.9
Peaxi162Scf00904g00473 Petunia axillaris HOM05D004719 ORTHO05D005519 2.6e-34 149.4 224 42.4
AT5G53330 Arabidopsis thaliana HOM05D004719 ORTHO05D005519 3.4e-34 149.1 224 42.9
CARHR266390 Cardamine hirsuta HOM05D004719 ORTHO05D005519 4.5e-34 148.7 177 48.6
BcaC04g20465 Brassica carinata HOM05D004719 ORTHO05D005519 7.7e-34 147.9 174 47.1
C09p43180 Brassica napus HOM05D004719 ORTHO05D005519 7.7e-34 147.9 174 47.1
AL8G28040 Arabidopsis lyrata HOM05D004719 ORTHO05D005519 1.0e-33 147.5 221 43.0
Carub.0008s1351 Capsella rubella HOM05D004719 ORTHO05D005519 2.9e-33 146.0 233 43.3
Solyc03g007520.3 Solanum lycopersicum HOM05D004719 ORTHO05D005519 3.8e-33 145.6 223 43.0
BolC3t14182H Brassica oleracea HOM05D004719 ORTHO05D005519 5.0e-33 145.2 229 41.5
Sopen03g003480 Solanum pennellii HOM05D004719 ORTHO05D005519 8.5e-33 144.4 223 42.6
VMungo1309G2489 Vigna mungo HOM05D004719 ORTHO05D005519 1.4e-32 143.7 230 43.5
BolC9t57191H Brassica oleracea HOM05D004719 ORTHO05D005519 9.4e-32 141.0 179 46.4
HanXRQChr07g0207131 Helianthus annuus HOM05D004719 ORTHO05D005519 1.6e-31 140.2 194 41.2
CAN.G108.16 Capsicum annuum HOM05D004719 ORTHO05D005519 2.1e-31 139.8 142 50.7
TPR.G33870 Trifolium pratense HOM05D004719 ORTHO05D005519 2.1e-31 139.8 200 45.5
BraA10t43168Z Brassica rapa HOM05D004719 ORTHO05D005519 2.7e-31 139.4 168 45.8
Actinidia34185 Actinidia chinensis HOM05D004719 ORTHO05D005519 3.6e-31 139.0 139 54.7
A10p10840 Brassica napus HOM05D004719 ORTHO05D005519 6.1e-31 138.3 218 42.7
BcaNung07347 Brassica carinata HOM05D004719 ORTHO05D005519 1.0e-30 137.5 153 48.4
CDE08G1019 Ceratophyllum demersum HOM05D004719 ORTHO05D005519 1.1e-29 134.0 169 46.7
Os06g0160400 Oryza sativa ssp. japonica HOM05D004719 ORTHO05D005519 4.4e-29 132.1 149 46.3
MBI06_g04286_MAGBIO Magnolia biondii HOM05D004719 ORTHO05D005519 3.1e-27 125.9 222 40.5
VMungo0647G2259 Vigna mungo HOM05D004719 ORTHO05D005519 5.3e-27 125.2 108 60.2
Zm00001eb376120 Zea mays HOM05D004719 ORTHO05D005519 5.3e-27 125.2 241 35.7
Manes.14G019414 Manihot esculenta HOM05D004719 ORTHO05D005519 1.6e-26 123.6 178 46.6
Mapoly0050s0076 Marchantia polymorpha HOM05D004719 ORTHO05D005519 3.8e-25 119.0 124 50.0
CDE02G1124 Ceratophyllum demersum HOM05D004719 ORTHO05D005519 5.5e-24 115.2 170 41.8
GSVIVG01028725001 Vitis vinifera HOM05D004719 ORTHO05D005519 5.2e-22 108.6 99 57.6
AagrBONN_evm.TU.Sc2ySwM_340.345 Anthoceros agrestis HOM05D004719 ORTHO05D005519 2.8e-20 102.8 124 44.4
SEGI_18632 Sequoiadendron giganteum HOM05D004719 ORTHO05D005519 2.9e-17 92.8 100 57.0
C03p17810 Brassica napus HOM05D004719 ORTHO05D005519 2.7e-15 86.3 173 36.4
Pp3c1_11420 Physcomitrium patens HOM05D004719 ORTHO05D005519 4.0e-14 82.4 124 37.1
Dinv28349 Davidia involucrata HOM05D004719 ORTHO05D005519 2.0e-10 70.1 57 63.2
CBR_g83324 Chara braunii HOM05D004719 ORTHO05D005519 1.1e-08 64.3 73 43.8
Solyc06g036500.1 Solanum lycopersicum HOM05D004719 ORTHO05D005519 7.2e-08 61.6 99 39.4
QL04p064474 Quercus lobata HOM05D000013 ORTHO05D000011 9.5e-08 61.2 44 68.2
FAN16G3662 Fragaria x ananassa HOM05D004719 ORTHO05D005519 2.8e-07 59.7 40 67.5
FAN01G1848 Fragaria x ananassa HOM05D002077 ORTHO05D000818 4.7e-07 58.9 44 63.6
FvH4_6g34200 Fragaria vesca HOM05D004719 ORTHO05D005519 8.0e-07 58.2 41 61.0
FAN18G3526 Fragaria x ananassa HOM05D006854 ORTHO05D210570 8.0e-07 58.2 59 50.8
Sopen06g012490 Solanum pennellii HOM05D004719 ORTHO05D005519 8.0e-07 58.2 134 35.1
FvH4_7g16570 Fragaria vesca HOM05D004719 ORTHO05D005519 1.8e-06 57.0 60 50.0


User provided reference genes

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