Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR142G4089 Punica granatum HOM05D003986 ORTHO05D004916 0.0e+00 3473.7 1837 100.0
Eucgr.B02697 Eucalyptus grandis HOM05D003986 ORTHO05D004916 0.0e+00 2529.6 1873 72.5
Dinv11756 Davidia involucrata HOM05D003986 ORTHO05D004916 0.0e+00 2508.0 1913 71.6
Atru.chr11.800 Acer truncatum HOM05D003986 ORTHO05D004916 0.0e+00 2491.1 1901 71.7
Manes.17G086100 Manihot esculenta HOM05D003986 ORTHO05D004916 0.0e+00 2472.2 1930 70.6
Actinidia12415 Actinidia chinensis HOM05D003986 ORTHO05D004916 0.0e+00 2457.9 1905 70.8
CANSAT78G0669 Cannabis sativa HOM05D003986 ORTHO05D004916 0.0e+00 2445.6 1887 70.5
Gohir.A03G112200 Gossypium hirsutum HOM05D003986 ORTHO05D004916 0.0e+00 2437.9 1893 70.5
Potri.013G085000 Populus trichocarpa HOM05D003986 ORTHO05D004916 0.0e+00 2436.0 1905 70.2
GSVIVG01011619001 Vitis vinifera HOM05D003986 ORTHO05D004916 0.0e+00 2427.9 1871 70.1
CiPaw.06G055800 Carya illinoinensis HOM05D003986 ORTHO05D004916 0.0e+00 2425.6 1900 69.5
Glyma.05G241400 Glycine max HOM05D003986 ORTHO05D004916 0.0e+00 2423.7 1889 69.4
Sed0014719 Sechium edule HOM05D003986 ORTHO05D004916 0.0e+00 2423.3 1911 69.3
Gorai.005G152800 Gossypium raimondii HOM05D003986 ORTHO05D004916 0.0e+00 2417.1 1886 70.5
TWI74G0603 Tripterygium wilfordii HOM05D003986 ORTHO05D004916 0.0e+00 2414.8 1894 69.7
Potri.019G054600 Populus trichocarpa HOM05D003986 ORTHO05D004916 0.0e+00 2414.0 1920 69.3
Glyma.08G048400 Glycine max HOM05D003986 ORTHO05D004916 0.0e+00 2412.9 1889 69.7
MELO3C005265.2 Cucumis melo HOM05D003986 ORTHO05D004916 0.0e+00 2406.7 1902 69.2
CsaV3_5G027880 Cucumis sativus L. HOM05D003986 ORTHO05D004916 0.0e+00 2400.2 1901 69.0
Phvul.002G324500 Phaseolus vulgaris HOM05D003986 ORTHO05D004916 0.0e+00 2390.5 1884 68.8
MD09G1258800 Malus domestica HOM05D003986 ORTHO05D004916 0.0e+00 2390.1 1886 69.6
Prupe.3G150800 Prunus persica HOM05D003986 ORTHO05D004916 0.0e+00 2382.4 1890 69.3
TPR.G12867 Trifolium pratense HOM05D003986 ORTHO05D004916 0.0e+00 2381.7 1885 69.5
Nn4g24477 Nelumbo nucifera HOM05D003986 ORTHO05D004916 0.0e+00 2378.6 1904 68.3
arahy.Tifrunner.gnm1.ann1.R76IPR Arachis hypogaea HOM05D003986 ORTHO05D004916 0.0e+00 2373.6 1907 68.5
Lalb_Chr16g0387401 Lupinus albus HOM05D003986 ORTHO05D004916 0.0e+00 2372.8 1886 68.5
arahy.Tifrunner.gnm1.ann1.374THF Arachis hypogaea HOM05D003986 ORTHO05D004916 0.0e+00 2364.3 1921 68.1
Lj4g0022556 Lotus japonicus HOM05D003986 ORTHO05D004916 0.0e+00 2361.6 1888 68.9
VMungo0251G0132 Vigna mungo HOM05D003986 ORTHO05D004916 0.0e+00 2357.0 1893 68.0
Psat7g004480 Pisum sativum HOM05D003986 ORTHO05D004916 0.0e+00 2356.3 1894 68.5
Thecc.02G306600 Theobroma cacao HOM05D003986 ORTHO05D004916 0.0e+00 2356.3 1870 69.3
Lalb_Chr05g0222051 Lupinus albus HOM05D003986 ORTHO05D004916 0.0e+00 2354.3 1888 68.7
Peaxi162Scf00937g00119 Petunia axillaris HOM05D003986 ORTHO05D004916 0.0e+00 2348.2 1886 68.0
ClCG01G006690 Citrullus lanatus HOM05D003986 ORTHO05D004916 0.0e+00 2330.1 2108 62.4
MSTRG.2114 Avicennia marina HOM05D003986 ORTHO05D004916 0.0e+00 2317.3 1876 67.4
Ca_17244_v3 Cicer arietinum L. HOM05D003986 ORTHO05D004916 0.0e+00 2316.2 1894 67.2
Medtr8g106090 Medicago truncatula HOM05D003986 ORTHO05D004916 0.0e+00 2303.9 1896 67.5
Sabra13G0078400 Salix brachista HOM05D003986 ORTHO05D004916 0.0e+00 2287.3 1992 65.3
COL.COLO4_06656 Corchorus olitorius HOM05D003986 ORTHO05D004916 0.0e+00 2280.8 1928 66.1
Aqoxy3G04028 Aquilegia oxysepala HOM05D003986 ORTHO05D004916 0.0e+00 2271.1 1883 66.1
PSO782G5475 Papaver somniferum HOM05D003986 ORTHO05D004916 0.0e+00 2270.4 1887 65.8
Ah.02g127910 Amaranthus hybridus HOM05D003986 ORTHO05D004916 0.0e+00 2262.6 1881 66.5
Sopen05g014610 Solanum pennellii HOM05D003986 ORTHO05D004916 0.0e+00 2261.9 1888 67.5
Sabra19G0063600 Salix brachista HOM05D003986 ORTHO05D004916 0.0e+00 2258.8 2263 58.3
HanXRQChr12g0381871 Helianthus annuus HOM05D003986 ORTHO05D004916 0.0e+00 2256.5 1849 66.7
CAN.G206.116 Capsicum annuum HOM05D003986 ORTHO05D004916 0.0e+00 2255.3 1893 67.2
Solyc05g017890.4 Solanum lycopersicum HOM05D003986 ORTHO05D004916 0.0e+00 2248.4 1887 67.3
DCAR_026811 Daucus carota HOM05D003986 ORTHO05D004916 0.0e+00 2246.9 1929 64.6
Migut.E00504 Erythranthe guttata HOM05D003986 ORTHO05D004916 0.0e+00 2246.5 1868 66.4
Dinv14386 Davidia involucrata HOM05D003986 ORTHO05D004916 0.0e+00 2238.0 1880 66.3
TAR629G0821 Trochodendron aralioides HOM05D003986 ORTHO05D004916 0.0e+00 2236.8 1734 69.2
ECA246G1343 Erigeron canadensis HOM05D003986 ORTHO05D004916 0.0e+00 2231.8 1844 66.7
PSO063G2585 Papaver somniferum HOM05D003986 ORTHO05D004916 0.0e+00 2228.4 1855 65.7
THA.LOC104807876 Tarenaya hassleriana HOM05D003986 ORTHO05D004916 0.0e+00 2225.7 1868 65.2
AL1G40240 Arabidopsis lyrata HOM05D003986 ORTHO05D004916 0.0e+00 2224.5 1867 67.0
Haze_08333 Corylus avellana HOM05D003986 ORTHO05D004916 0.0e+00 2219.9 2090 61.6
AT1G24706 Arabidopsis thaliana HOM05D003986 ORTHO05D004916 0.0e+00 2217.6 1865 66.6
ATR0021G052 Amborella trichopoda HOM05D003986 ORTHO05D004916 0.0e+00 2216.4 1882 64.5
Medtr7g117220 Medicago truncatula HOM05D003986 ORTHO05D004916 0.0e+00 2209.9 1890 65.7
QL03p038358 Quercus lobata HOM05D003986 ORTHO05D004916 0.0e+00 2208.7 1724 70.2
EL10Ac6g14201 Beta vulgaris HOM05D003986 ORTHO05D004916 0.0e+00 2194.1 1873 65.2
A08p26750 Brassica napus HOM05D003986 ORTHO05D004916 0.0e+00 2188.7 1861 65.1
RcHm_v2.0_Chr4g0442311 Rosa chinensis HOM05D003986 ORTHO05D004916 0.0e+00 2185.6 1903 65.1
Sp1g23110 Schrenkiella parvula HOM05D003986 ORTHO05D004916 0.0e+00 2174.1 1867 65.3
CSS0009129 Camellia sinensis var. sinensis HOM05D003986 ORTHO05D004916 0.0e+00 2171.7 1737 69.8
BraA08t34620Z Brassica rapa HOM05D003986 ORTHO05D004916 0.0e+00 2164.8 1858 65.2
Carub.0001s2544 Capsella rubella HOM05D003986 ORTHO05D004916 0.0e+00 2155.9 1863 65.6
C03p73260 Brassica napus HOM05D003986 ORTHO05D004916 0.0e+00 2152.1 1863 64.1
FAN07G2168 Fragaria x ananassa HOM05D003986 ORTHO05D004916 0.0e+00 2151.7 1901 64.1
Aa31LG7G9380 Aethionema arabicum HOM05D003986 ORTHO05D004916 0.0e+00 2149.8 1862 64.1
BolC3t19622H Brassica oleracea HOM05D003986 ORTHO05D004916 0.0e+00 2139.0 1858 64.1
CARHR026420 Cardamine hirsuta HOM05D003986 ORTHO05D004916 0.0e+00 2132.8 1836 64.1
FvH4_4g33200 Fragaria vesca HOM05D003986 ORTHO05D004916 0.0e+00 2122.1 1904 63.6
Sc14g0006590 Simmondsia chinensis HOM05D003986 ORTHO05D004916 0.0e+00 2119.0 1761 66.6
FAN22G0296 Fragaria x ananassa HOM05D003986 ORTHO05D004916 0.0e+00 2118.6 1902 63.9
AUR62038486 Chenopodium quinoa HOM05D003986 ORTHO05D004916 0.0e+00 2115.5 1858 62.9
FAN12G0920 Fragaria x ananassa HOM05D003986 ORTHO05D004916 0.0e+00 2108.2 1908 63.6
THA.LOC104825570 Tarenaya hassleriana HOM05D003986 ORTHO05D004916 0.0e+00 2107.0 1870 64.7
SGA_v2.0_scaffold3G01767 Striga asiatica HOM05D003986 ORTHO05D004916 0.0e+00 2101.6 1959 61.4
FAN17G2354 Fragaria x ananassa HOM05D003986 ORTHO05D004916 0.0e+00 2094.3 1903 63.2
AUR62014146 Chenopodium quinoa HOM05D003986 ORTHO05D004916 0.0e+00 2088.9 1919 61.0
unitig_8.g4016 Utricularia gibba HOM05D003986 ORTHO05D004916 0.0e+00 2075.1 1962 59.6
HPP92_004743 Vanilla planifolia HOM05D003986 ORTHO05D004916 0.0e+00 2065.8 1881 61.4
Ca_29522_v3 Cicer arietinum L. HOM05D003986 ORTHO05D004916 0.0e+00 2042.7 1787 64.0
Oeu006345.3 Olea europaea HOM05D003986 ORTHO05D004916 0.0e+00 2031.1 1915 61.4
Thhalv10006540m.g Eutrema salsugineum HOM05D003986 ORTHO05D004916 0.0e+00 2027.7 1866 61.9
Lsat_1_v5_gn_3_102381 Lactuca sativa HOM05D003986 ORTHO05D004916 0.0e+00 2019.6 1365 75.3
Zm00001eb156750 Zea mays HOM05D003986 ORTHO05D004916 0.0e+00 1861.3 1825 57.5
CSS0026713 Camellia sinensis var. sinensis HOM05D003986 ORTHO05D004916 0.0e+00 1854.0 1515 69.0
Mapoly0001s0369 Marchantia polymorpha HOM05D003986 ORTHO05D004916 0.0e+00 1830.8 1997 55.5
AagrBONN_evm.TU.Sc2ySwM_117.1912 Anthoceros agrestis HOM05D003986 ORTHO05D004916 0.0e+00 1776.5 1987 54.2
Lj3C862T8 Lonicera japonica HOM05D003986 ORTHO05D004916 0.0e+00 1768.8 1494 67.0
Pp3c11_17570 Physcomitrium patens HOM05D003986 ORTHO05D004916 0.0e+00 1680.6 1819 54.1
Os01g0916800 Oryza sativa ssp. japonica HOM05D003986 ORTHO05D004916 0.0e+00 1625.5 1855 53.1
SMO145G0041 Selaginella moellendorffii HOM05D003986 ORTHO05D004916 0.0e+00 1599.7 1861 53.1
Gohir.D02G136832 Gossypium hirsutum HOM05D003986 ORTHO05D004916 0.0e+00 1485.3 988 76.6
Nitab4.5_0004735g0030 Nicotiana tabacum HOM05D003986 ORTHO05D004916 0.0e+00 1413.7 1262 65.1
Hund24923 Selenicereus undatus HOM05D003986 ORTHO05D004916 0.0e+00 1398.6 1056 70.1
Ciclev10014076m.g Citrus clementina HOM05D003986 ORTHO05D004916 0.0e+00 1392.5 1207 66.4
Nitab4.5_0000011g0120 Nicotiana tabacum HOM05D003986 ORTHO05D004916 0.0e+00 1374.8 1284 63.1
BcaB03g12045 Brassica carinata HOM05D003986 ORTHO05D004916 0.0e+00 1339.7 1460 56.1
SalBow2G1878 Salvia bowleyana HOM05D003986 ORTHO05D004916 0.0e+00 1262.7 1202 61.6
CDE05G3646 Ceratophyllum demersum HOM05D003986 ORTHO05D004916 0.0e+00 1204.1 853 72.0
SHI04403 Sapria himalayana HOM05D003986 ORTHO05D004916 0.0e+00 1149.4 940 66.6
Cpa.g.sc2.153 Carica papaya HOM05D003986 ORTHO05D004916 3.0e-303 1046.2 1116 57.6
CBR_g39719 Chara braunii HOM05D003986 ORTHO05D004916 6.8e-300 1035.0 1421 43.9
Ciclev10017843m.g Citrus clementina HOM05D003986 ORTHO05D004916 6.8e-292 1008.4 676 76.0
CAN.G71.2 Capsicum annuum HOM05D003986 ORTHO05D004916 1.7e-279 967.2 682 73.6
CDE05G1820 Ceratophyllum demersum HOM05D003986 ORTHO05D004916 4.9e-274 949.1 1133 52.6
Gohir.D02G136766 Gossypium hirsutum HOM05D003986 ORTHO05D004916 1.6e-224 784.6 852 58.2
MCO13G375 Micromonas commoda HOM05D003986 ORTHO05D004916 6.8e-223 779.2 1325 38.1
Cpa.g.sc2.149 Carica papaya HOM05D003986 ORTHO05D004916 2.3e-207 727.6 451 83.8
BcaC05g26698 Brassica carinata HOM05D003986 ORTHO05D004916 6.8e-207 726.1 1095 44.7
CDE05G1425 Ceratophyllum demersum HOM05D003986 ORTHO05D004916 5.2e-199 699.9 956 48.7
Lj3P862T26 Lonicera japonica HOM05D003986 ORTHO05D004916 3.8e-165 587.4 393 75.6
PRCOL_00006124 Prasinoderma coloniale HOM05D003986 ORTHO05D004916 4.8e-160 570.5 1172 34.6
Nitab4.5_0000011g0130 Nicotiana tabacum HOM05D003986 ORTHO05D004916 3.0e-146 524.6 368 72.3
CDE05G1569 Ceratophyllum demersum HOM05D003986 ORTHO05D004916 3.7e-144 517.7 371 71.4
Nitab4.5_0004735g0040 Nicotiana tabacum HOM05D003986 ORTHO05D004916 6.9e-135 486.9 369 68.6
Rhsim04G0125900 Rhododendron simsii HOM05D003986 ORTHO05D004916 2.6e-113 415.2 499 49.5
BcaB03g12046 Brassica carinata HOM05D003986 ORTHO05D004916 1.2e-110 406.4 299 68.6
COL.COLO4_04150 Corchorus olitorius HOM05D003986 ORTHO05D004916 1.1e-95 356.7 294 65.0
Cre12.g507700 Chlamydomonas reinhardtii HOM05D003986 ORTHO05D004916 2.7e-94 352.1 1375 25.7
AagrBONN_evm.TU.Sc2ySwM_368.2552 Anthoceros agrestis HOM05D003986 ORTHO05D004916 4.7e-91 341.3 214 76.6
Rhsim09G0087200 Rhododendron simsii HOM05D003986 ORTHO05D004916 2.2e-88 332.4 198 82.3
Nitab4.5_0000011g0140 Nicotiana tabacum HOM05D003986 ORTHO05D004916 1.8e-87 329.3 239 71.1
Nitab4.5_0004735g0050 Nicotiana tabacum HOM05D003986 ORTHO05D004916 1.2e-83 316.6 262 65.3
CAN.G71.1 Capsicum annuum HOM05D003986 ORTHO05D004916 2.4e-79 302.4 521 49.1
Cfa024658 Carpinus fangiana HOM05D003986 ORTHO05D004916 7.0e-79 300.8 1600 25.2
TAR371G1117 Trochodendron aralioides HOM05D003986 ORTHO05D004916 8.6e-77 293.9 535 43.2
C05p25490 Brassica napus HOM05D003986 ORTHO05D004916 2.1e-75 289.3 263 58.6
Ca_30366_v3 Cicer arietinum L. HOM05D003986 ORTHO05D004916 8.4e-64 250.8 172 75.6
Lsat_1_v5_gn_3_86221 Lactuca sativa HOM05D003986 ORTHO05D004916 1.7e-61 243.0 228 61.4
BcaB05g22549 Brassica carinata HOM05D003986 ORTHO05D004916 4.4e-57 228.4 245 56.7
BolC5t31277H Brassica oleracea HOM05D003986 ORTHO05D004916 5.8e-57 228.0 190 63.2
Rhsim04G0143900 Rhododendron simsii HOM05D003986 ORTHO05D004916 2.4e-55 222.6 236 53.8
TAR371G0322 Trochodendron aralioides HOM05D003986 ORTHO05D004916 4.2e-55 221.9 589 31.4
Hund24924 Selenicereus undatus HOM05D008000 ORTHO05D010275 2.5e-52 212.6 185 58.9
Rhsim04G0143600 Rhododendron simsii HOM05D003986 ORTHO05D004916 8.1e-51 207.6 274 49.6
SHI04410 Sapria himalayana HOM05D003986 ORTHO05D004916 1.2e-46 193.7 165 60.0
Rhsim04G0143700 Rhododendron simsii HOM05D003986 ORTHO05D004916 3.9e-45 188.7 223 50.2
Actinidia23394 Actinidia chinensis HOM05D003986 ORTHO05D004916 9.3e-39 167.5 394 38.3
SHI04405 Sapria himalayana HOM05D003986 ORTHO05D004916 2.1e-38 166.4 106 74.5
RcHm_v2.0_Chr2g0110801 Rosa chinensis HOM05D003986 ORTHO05D004916 3.3e-36 159.1 89 83.1
TAR629G2897 Trochodendron aralioides HOM05D003986 ORTHO05D004916 6.7e-29 134.8 131 58.8
Sabra18G0054000 Salix brachista HOM05D003986 ORTHO05D004916 1.1e-28 134.0 108 69.4
Actinidia23393 Actinidia chinensis HOM05D003986 ORTHO05D004916 1.4e-26 127.1 149 54.4
Lalb_Chr18g0049821 Lupinus albus HOM05D003986 ORTHO05D004916 5.3e-26 125.2 75 85.3
Ciclev10015223m.g Citrus clementina HOM05D000271 ORTHO05D002152 3.4e-25 122.5 84 76.2
MBI18_g21002_MAGBIO Magnolia biondii HOM05D003986 ORTHO05D004916 2.2e-24 119.8 105 63.8
Cpa.g.c39725 Carica papaya HOM05D003986 ORTHO05D004916 1.4e-23 117.1 89 64.0
Lalb_Chr18g0050041 Lupinus albus HOM05D003986 ORTHO05D004916 1.4e-23 117.1 69 85.5
BcaC05g26498 Brassica carinata HOM05D003986 ORTHO05D004916 3.2e-23 115.9 75 78.7
Cpa.g.sc2.147 Carica papaya HOM05D003986 ORTHO05D004916 9.3e-23 114.4 61 90.2
CSS0042784 Camellia sinensis var. sinensis HOM05D003986 ORTHO05D004916 5.1e-21 108.6 84 60.7
Sabra18G0053100 Salix brachista HOM05D003986 ORTHO05D004078 1.4e-18 100.5 107 56.1
Cpa.g.sc2.145 Carica papaya HOM05D003986 ORTHO05D004916 4.1e-18 99.0 128 49.2
Sabra18G0052900 Salix brachista HOM05D003986 ORTHO05D004916 2.0e-17 96.7 58 82.8
Sabra18G0053600 Salix brachista HOM05D003986 ORTHO05D004916 2.0e-17 96.7 58 82.8
Sabra18G0053500 Salix brachista HOM05D003986 ORTHO05D004916 1.7e-16 93.6 58 81.0
Atru.chr2.736 Acer truncatum HOM05D003986 ORTHO05D004916 3.9e-13 82.4 97 47.4
COL.COLO4_04151 Corchorus olitorius HOM05D003986 ORTHO05D004916 3.9e-13 82.4 73 58.9
Lalb_Chr05g0227571 Lupinus albus HOM05D003986 ORTHO05D004916 3.9e-13 82.4 41 92.7
COL.COLO4_22391 Corchorus olitorius HOM05D002579 ORTHO05D002775 2.6e-12 79.7 54 72.2
Psat0s3352g0200 Pisum sativum HOM05D003986 ORTHO05D020973 7.4e-12 78.2 51 80.4
VMungo0266G0001 Vigna mungo HOM05D000230 ORTHO05D000176 7.4e-12 78.2 60 66.7
CsaV3_1G014700 Cucumis sativus L. HOM05D003986 ORTHO05D004916 1.3e-11 77.4 104 45.2
Psat0s3352g0120 Pisum sativum HOM05D003435 ORTHO05D020973 2.8e-11 76.3 48 68.8
VMungo0465G0002 Vigna mungo HOM05D003986 ORTHO05D004916 1.1e-10 74.3 59 64.4
TPR.G39728 Trifolium pratense HOM05D003986 ORTHO05D004916 6.9e-10 71.6 74 56.8
COL.COLO4_22474 Corchorus olitorius HOM05D002548 ORTHO05D003031 2.9e-08 66.2 69 47.8
Sabra18G0053300 Salix brachista HOM05D003986 ORTHO05D004916 2.1e-06 60.1 59 54.2


User provided reference genes

Program Settings