Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR142G3177 Punica granatum HOM05D004762 ORTHO05D005972 7.0e-270 933.3 460 100.0
Eucgr.G03076 Eucalyptus grandis HOM05D004762 ORTHO05D005972 1.0e-204 716.8 456 76.5
TAR636G3670 Trochodendron aralioides HOM05D004762 ORTHO05D005972 5.1e-204 714.5 451 75.4
Rhsim03G0145100 Rhododendron simsii HOM05D004762 ORTHO05D005972 9.6e-203 710.3 457 74.4
Hma1.2p1_0145F.1_g065350 Hydrangea macrophylla HOM05D004762 ORTHO05D005972 3.7e-202 708.4 440 76.6
Atru.BG.273.p Acer truncatum HOM05D004762 ORTHO05D005972 6.3e-202 707.6 424 80.2
Ciclev10031450m.g Citrus clementina HOM05D004762 ORTHO05D005972 1.8e-201 706.1 457 74.0
CiPaw.01G300200 Carya illinoinensis HOM05D004762 ORTHO05D005972 3.1e-201 705.3 457 74.4
Potri.012G095500 Populus trichocarpa HOM05D004762 ORTHO05D005972 4.1e-201 704.9 450 74.7
QL06p052059 Quercus lobata HOM05D004762 ORTHO05D005972 4.1e-201 704.9 458 75.5
Manes.07G131500 Manihot esculenta HOM05D004762 ORTHO05D005972 2.6e-200 702.2 457 75.1
CSS0039953 Camellia sinensis var. sinensis HOM05D004762 ORTHO05D005972 1.7e-199 699.5 456 74.8
CSS0044129 Camellia sinensis var. sinensis HOM05D004762 ORTHO05D005972 1.7e-199 699.5 456 74.8
Cfa001301 Carpinus fangiana HOM05D004762 ORTHO05D005972 1.4e-198 696.4 459 73.9
Haze_17244 Corylus avellana HOM05D004762 ORTHO05D005972 9.3e-198 693.7 468 72.9
vmacro06958 Vaccinium macrocarpon HOM05D004762 ORTHO05D005972 1.2e-197 693.3 489 70.1
Duzib106G1587 Durio zibethinus HOM05D004762 ORTHO05D005972 1.6e-197 693.0 462 72.5
Gorai.013G017200 Gossypium raimondii HOM05D004762 ORTHO05D005972 1.6e-197 693.0 447 74.7
arahy.Tifrunner.gnm1.ann1.BGVI4S Arachis hypogaea HOM05D004762 ORTHO05D005972 2.7e-197 692.2 453 74.0
Sed0015827 Sechium edule HOM05D004762 ORTHO05D005972 6.1e-197 691.0 458 73.1
Psat4g160680 Pisum sativum HOM05D004762 ORTHO05D005972 1.8e-196 689.5 447 74.3
TWI09G1175 Tripterygium wilfordii HOM05D004762 ORTHO05D005972 1.8e-196 689.5 440 74.8
CANSAT56G2662 Cannabis sativa HOM05D004762 ORTHO05D005972 2.3e-196 689.1 458 73.4
Thecc.10G014000 Theobroma cacao HOM05D004762 ORTHO05D005972 2.3e-196 689.1 459 72.8
Lalb_Chr04g0254441 Lupinus albus HOM05D004762 ORTHO05D005972 3.9e-196 688.3 451 72.9
TWI53G2041 Tripterygium wilfordii HOM05D004762 ORTHO05D005972 8.7e-196 687.2 441 74.6
GSVIVG01032791001 Vitis vinifera HOM05D004762 ORTHO05D005972 1.1e-195 686.8 456 73.0
AUR62012271 Chenopodium quinoa HOM05D004762 ORTHO05D005972 1.9e-195 686.0 451 72.1
Gohir.D13G015700 Gossypium hirsutum HOM05D004762 ORTHO05D005972 3.3e-195 685.3 451 74.3
COL.COLO4_23625 Corchorus olitorius HOM05D004762 ORTHO05D005972 1.6e-194 682.9 462 71.4
Phvul.010G113600 Phaseolus vulgaris HOM05D004762 ORTHO05D005972 1.6e-194 682.9 453 72.6
Medtr8g027750 Medicago truncatula HOM05D004762 ORTHO05D005972 2.2e-194 682.6 448 73.2
arahy.Tifrunner.gnm1.ann1.NBD53L Arachis hypogaea HOM05D004762 ORTHO05D005972 3.7e-194 681.8 466 71.5
PSO675G7276 Papaver somniferum HOM05D004762 ORTHO05D005972 8.2e-194 680.6 458 70.5
COL.COLO4_25767 Corchorus olitorius HOM05D004762 ORTHO05D005972 1.4e-193 679.9 456 72.4
FvH4_7g24680 Fragaria vesca HOM05D004762 ORTHO05D005972 2.4e-193 679.1 457 71.3
Lj3g0010190 Lotus japonicus HOM05D004762 ORTHO05D005972 2.4e-193 679.1 451 73.2
VMungo0331G1989 Vigna mungo HOM05D004762 ORTHO05D005972 4.1e-193 678.3 453 72.0
Glyma.07G056300 Glycine max HOM05D004762 ORTHO05D005972 9.0e-193 677.2 453 71.3
PSO017G1441 Papaver somniferum HOM05D004762 ORTHO05D005972 9.0e-193 677.2 455 70.1
FAN10G2322 Fragaria x ananassa HOM05D004762 ORTHO05D005972 1.2e-192 676.8 457 71.1
Nn1g09364 Nelumbo nucifera HOM05D004762 ORTHO05D005972 2.0e-192 676.0 443 72.7
arahy.Tifrunner.gnm1.ann1.YY9F0M Arachis hypogaea HOM05D004762 ORTHO05D005972 3.4e-192 675.2 476 70.0
Prupe.2G252400 Prunus persica HOM05D004762 ORTHO05D005972 4.5e-192 674.9 456 72.8
ClCG07G004360 Citrullus lanatus HOM05D004762 ORTHO05D005972 1.3e-191 673.3 488 69.1
CsaV3_5G010300 Cucumis sativus L. HOM05D004762 ORTHO05D005972 1.7e-191 672.9 448 73.2
Sc10g0002460 Simmondsia chinensis HOM05D004762 ORTHO05D005972 1.7e-191 672.9 447 71.8
EL10Ac2g04854 Beta vulgaris HOM05D004762 ORTHO05D005972 2.2e-191 672.5 453 70.6
RcHm_v2.0_Chr1g0370541 Rosa chinensis HOM05D004762 ORTHO05D005972 2.9e-191 672.2 458 71.4
Aqoxy7G00585 Aquilegia oxysepala HOM05D004762 ORTHO05D005972 5.0e-191 671.4 450 72.0
Aa31LG5G19380 Aethionema arabicum HOM05D004762 ORTHO05D005972 6.5e-191 671.0 456 71.7
MD01G1154800 Malus domestica HOM05D004762 ORTHO05D005972 6.5e-191 671.0 456 72.6
PSO478G3676 Papaver somniferum HOM05D004762 ORTHO05D005972 1.1e-190 670.2 440 72.0
MD07G1223900 Malus domestica HOM05D004762 ORTHO05D005972 3.2e-190 668.7 456 72.6
Thhalv10016619m.g Eutrema salsugineum HOM05D004762 ORTHO05D005972 4.2e-190 668.3 453 71.7
A05p06240 Brassica napus HOM05D004762 ORTHO05D005972 1.6e-189 666.4 453 71.3
Carub.0004s2241 Capsella rubella HOM05D004762 ORTHO05D005972 1.6e-189 666.4 451 71.0
AT2G40190 Arabidopsis thaliana HOM05D004762 ORTHO05D005972 2.1e-189 666.0 446 71.3
FAN06G2944 Fragaria x ananassa HOM05D004762 ORTHO05D005972 4.6e-189 664.8 486 67.3
SalBow6G6782 Salvia bowleyana HOM05D004762 ORTHO05D005972 1.8e-188 662.9 448 72.3
BcaC02g12138 Brassica carinata HOM05D004762 ORTHO05D005972 2.3e-188 662.5 453 70.2
Ca_23540_v3 Cicer arietinum L. HOM05D004762 ORTHO05D005972 3.0e-188 662.1 469 69.1
C04p07190 Brassica napus HOM05D004762 ORTHO05D005972 5.1e-188 661.4 448 70.5
PSO017G5956 Papaver somniferum HOM05D004762 ORTHO05D005972 5.1e-188 661.4 472 67.6
BraA05t19588Z Brassica rapa HOM05D004762 ORTHO05D005972 8.8e-188 660.6 453 70.6
Migut.F00664 Erythranthe guttata HOM05D004762 ORTHO05D005972 1.5e-187 659.8 457 69.4
Sp4g22540 Schrenkiella parvula HOM05D004762 ORTHO05D005972 1.5e-187 659.8 451 70.7
Glyma.16G025200 Glycine max HOM05D004762 ORTHO05D005972 2.0e-187 659.4 450 70.7
HanXRQChr14g0459541 Helianthus annuus HOM05D004762 ORTHO05D005972 3.3e-187 658.7 449 71.5
AL108U10020 Arabidopsis lyrata HOM05D004762 ORTHO05D005972 4.3e-187 658.3 446 70.4
BcaB02g09041 Brassica carinata HOM05D004762 ORTHO05D005972 4.3e-187 658.3 429 73.0
Cc08_g07190 Coffea canephora HOM05D004762 ORTHO05D005972 4.3e-187 658.3 449 70.4
Solyc10g076800.2 Solanum lycopersicum HOM05D004762 ORTHO05D005972 7.4e-187 657.5 446 70.6
PGSC0003DMG400019183 Solanum tuberosum HOM05D004762 ORTHO05D005972 7.4e-187 657.5 446 70.6
Peaxi162Scf00284g00722 Petunia axillaris HOM05D004762 ORTHO05D005972 9.7e-187 657.1 459 69.7
BolC4t22343H Brassica oleracea HOM05D004762 ORTHO05D005972 1.3e-186 656.8 449 70.4
ATR0580G181 Amborella trichopoda HOM05D004762 ORTHO05D005972 1.7e-186 656.4 457 71.1
CAN.G1087.1 Capsicum annuum HOM05D004762 ORTHO05D005972 1.7e-186 656.4 438 71.2
ECA238G4598 Erigeron canadensis HOM05D001399 ORTHO05D001670 1.4e-185 653.3 423 73.8
Nitab4.5_0000797g0010 Nicotiana tabacum HOM05D004762 ORTHO05D005972 1.8e-185 652.9 458 69.0
Gohir.A13G014500 Gossypium hirsutum HOM05D004762 ORTHO05D005972 6.9e-185 651.0 450 71.3
CDE02G4330 Ceratophyllum demersum HOM05D004762 ORTHO05D005972 2.6e-184 649.0 450 70.0
Hma1.2p1_0523F.1_g172170 Hydrangea macrophylla HOM05D004762 ORTHO05D005972 2.6e-184 649.0 440 71.8
Sabra15G0114600 Salix brachista HOM05D004762 ORTHO05D005972 3.4e-184 648.7 599 57.4
CAN.G1305.22 Capsicum annuum HOM05D004762 ORTHO05D005972 4.5e-184 648.3 445 69.2
FAN01G2296 Fragaria x ananassa HOM05D004762 ORTHO05D005972 4.5e-184 648.3 503 64.0
Zm00001eb030250 Zea mays HOM05D004762 ORTHO05D005972 4.5e-184 648.3 453 69.1
Nitab4.5_0013304g0010 Nicotiana tabacum HOM05D004762 ORTHO05D005972 1.7e-183 646.4 448 69.2
Lj8A64T49 Lonicera japonica HOM05D004762 ORTHO05D005972 2.9e-183 645.6 450 71.1
DCAR_007786 Daucus carota HOM05D004762 ORTHO05D005972 1.9e-182 642.9 442 71.0
FAN03G0495 Fragaria x ananassa HOM05D004762 ORTHO05D005972 1.6e-181 639.8 475 67.2
AL4G37920 Arabidopsis lyrata HOM05D004762 ORTHO05D005972 2.0e-179 632.9 446 68.4
Oeu043882.1 Olea europaea HOM05D004762 ORTHO05D005972 3.7e-178 628.6 502 62.9
HPP92_020134 Vanilla planifolia HOM05D004762 ORTHO05D005972 1.1e-177 627.1 423 70.9
Lsat_1_v5_gn_2_124101 Lactuca sativa HOM05D004762 ORTHO05D005972 2.6e-176 622.5 450 68.4
Oeu011273.2 Olea europaea HOM05D004762 ORTHO05D005972 7.7e-176 620.9 537 59.2
AUR62022908 Chenopodium quinoa HOM05D004762 ORTHO05D005972 2.7e-165 585.9 376 73.4
Hma1.2p1_2705F.1_g327160 Hydrangea macrophylla HOM05D004762 ORTHO05D005972 2.3e-164 582.8 360 77.5
DCAR_024818 Daucus carota HOM05D004762 ORTHO05D005972 1.4e-161 573.5 454 61.5
MELO3C018365.2 Cucumis melo HOM05D004762 ORTHO05D005972 1.6e-160 570.1 382 72.0
TPR.G15355 Trifolium pratense HOM05D004762 ORTHO05D005972 4.2e-158 562.0 358 74.9
SGA_v2.0_scaffold44G16679 Striga asiatica HOM05D004762 ORTHO05D005972 4.9e-154 548.5 381 69.8
AagrBONN_evm.TU.Sc2ySwM_228.3247 Anthoceros agrestis HOM05D004762 ORTHO05D005972 2.7e-152 542.7 436 62.2
Mapoly0096s0017 Marchantia polymorpha HOM05D004762 ORTHO05D005972 1.3e-151 540.4 440 62.3
Pp3c14_26870 Physcomitrium patens HOM05D004762 ORTHO05D005972 9.8e-147 524.2 443 59.6
Actinidia33916 Actinidia chinensis HOM05D004762 ORTHO05D005972 7.0e-145 518.1 395 66.3
SMO358G0322 Selaginella moellendorffii HOM05D004762 ORTHO05D005972 4.6e-144 515.4 424 63.0
unitig_748.g8448 Utricularia gibba HOM05D004762 ORTHO05D005972 1.3e-143 513.8 438 58.9
SGA_v2.0_scaffold60G20982 Striga asiatica HOM05D004762 ORTHO05D005972 2.9e-138 496.1 470 55.7
CBR_g12682 Chara braunii HOM05D004762 ORTHO05D005972 1.0e-135 487.6 471 55.0
BcaC02g12136 Brassica carinata HOM05D004762 ORTHO05D005972 2.2e-130 469.9 431 58.5
Hund15913 Selenicereus undatus HOM05D004762 ORTHO05D005972 3.8e-122 442.6 455 52.7
Dinv21748 Davidia involucrata HOM05D004762 ORTHO05D005972 1.9e-121 440.3 281 72.6
Sopen10g028440 Solanum pennellii HOM05D004762 ORTHO05D005972 5.1e-111 405.6 270 70.0
CARHR135230 Cardamine hirsuta HOM05D004762 ORTHO05D005972 7.3e-110 401.7 276 67.8
MCO10G125 Micromonas commoda HOM05D004762 ORTHO05D005972 4.6e-104 382.5 523 42.6
PRCOL_00001728 Prasinoderma coloniale HOM05D004762 ORTHO05D005972 7.4e-102 375.2 447 47.0
PSO017G2836 Papaver somniferum HOM05D004762 ORTHO05D005972 9.0e-100 368.2 249 67.5
Os12g0583000 Oryza sativa ssp. japonica HOM05D004762 ORTHO05D005972 4.5e-99 365.9 253 70.8
Gohir.D06G056233 Gossypium hirsutum HOM05D004762 ORTHO05D005972 1.7e-98 364.0 250 72.0
Cre01.g058521 Chlamydomonas reinhardtii HOM05D004762 ORTHO05D005972 9.3e-97 358.2 507 42.4
Haze_26859 Corylus avellana HOM05D004762 ORTHO05D005972 9.0e-92 341.7 453 40.0
Gorai.004G138800 Gossypium raimondii HOM05D004762 ORTHO05D005972 1.9e-86 323.9 250 65.2
Gohir.D08G135600 Gossypium hirsutum HOM05D004762 ORTHO05D005972 3.3e-86 323.2 244 66.0
BraA04t18511Z Brassica rapa HOM05D004762 ORTHO05D001193 2.2e-69 267.3 237 60.3
BcaB01g03555 Brassica carinata HOM05D004762 ORTHO05D005972 4.5e-67 259.6 195 69.2
Potri.015G093000 Populus trichocarpa HOM05D004762 ORTHO05D005972 2.6e-62 243.8 178 68.0
Aqoxy4G02490 Aquilegia oxysepala HOM05D004762 ORTHO05D005972 4.4e-62 243.0 163 71.8
TAR633G0702 Trochodendron aralioides HOM05D003030 ORTHO05D003610 4.1e-60 236.5 142 81.0
Cpa.g.sc1441.3 Carica papaya HOM05D004762 ORTHO05D005972 1.2e-56 224.9 160 65.6
Aqoxy4G02491 Aquilegia oxysepala HOM05D004762 ORTHO05D005972 5.2e-55 219.5 184 61.4
A04p29970 Brassica napus HOM05D004762 ORTHO05D001193 3.7e-53 213.4 237 52.3
Nitab4.5_0006049g0030 Nicotiana tabacum HOM05D004762 ORTHO05D005972 1.9e-41 174.5 120 71.7
SEGI_20752 Sequoiadendron giganteum HOM05D004762 ORTHO05D005972 1.4e-39 168.3 113 72.6
QL11p009420 Quercus lobata HOM05D004762 ORTHO05D005972 6.8e-39 166.0 104 80.8
Aqoxy4G02489 Aquilegia oxysepala HOM05D004762 ORTHO05D005972 9.8e-38 162.2 106 75.5
EL10Ac2g03328 Beta vulgaris HOM05D004762 ORTHO05D005972 8.3e-37 159.1 106 75.5
Phvul.010G113266 Phaseolus vulgaris HOM05D004762 ORTHO05D005972 1.4e-36 158.3 119 61.3
BcaB06g29139 Brassica carinata HOM05D004762 ORTHO05D005972 1.7e-34 151.4 106 69.8
EL10Ac6g13956 Beta vulgaris HOM05D004762 ORTHO05D005972 4.7e-32 143.3 90 78.9
Hma1.2p1_0812F.1_g222370 Hydrangea macrophylla HOM05D004762 ORTHO05D005972 8.0e-32 142.5 328 31.4
TPR.G10834 Trifolium pratense HOM05D004762 ORTHO05D005972 2.9e-29 134.0 90 65.6
Nitab4.5_0001180g0090 Nicotiana tabacum HOM05D004762 ORTHO05D005972 6.2e-24 116.3 90 56.7
EL10Ac6g14685 Beta vulgaris HOM05D004762 ORTHO05D005972 9.8e-22 109.0 104 56.7
BcaC01g05421 Brassica carinata HOM05D002909 ORTHO05D000493 8.3e-21 105.9 71 77.5
C03p26800 Brassica napus HOM05D000223 ORTHO05D001193 8.3e-21 105.9 71 77.5
BolC3t15065H Brassica oleracea HOM05D000223 ORTHO05D001193 8.3e-21 105.9 71 77.5
SEGI_02041 Sequoiadendron giganteum HOM05D004762 ORTHO05D005972 1.1e-20 105.5 97 52.6
arahy.Tifrunner.gnm1.ann1.38D1EG Arachis hypogaea HOM05D005637 ORTHO05D006983 7.8e-19 99.4 74 63.5
arahy.Tifrunner.gnm1.ann1.SGI312 Arachis hypogaea HOM05D004762 ORTHO05D005972 3.3e-17 94.0 68 64.7
EL10Ac3g06411 Beta vulgaris HOM05D004762 ORTHO05D005972 9.9e-14 82.4 44 88.6
SMO200G0224 Selaginella moellendorffii HOM05D004141 ORTHO05D005416 1.3e-13 82.0 305 26.6
Nitab4.5_0004804g0050 Nicotiana tabacum HOM05D004762 ORTHO05D005972 1.5e-09 68.6 51 60.8
MD13G1267900 Malus domestica HOM05D004762 ORTHO05D005972 5.6e-09 66.6 41 75.6
Gohir.D05G318650 Gossypium hirsutum HOM05D004762 ORTHO05D005972 3.6e-08 63.9 37 83.8
Gorai.012G079400 Gossypium raimondii HOM05D004762 ORTHO05D046822 3.6e-08 63.9 37 83.8
Sed0021837 Sechium edule HOM05D004762 ORTHO05D005972 4.7e-08 63.5 52 61.5
CDE06G2415 Ceratophyllum demersum HOM05D004141 ORTHO05D005416 1.1e-07 62.4 202 31.2
Gohir.D07G108366 Gossypium hirsutum HOM05D004762 ORTHO05D046822 1.1e-07 62.4 37 81.1
Lsat_1_v5_gn_3_79340 Lactuca sativa HOM05D004762 ORTHO05D231769 1.1e-07 62.4 67 50.7
Os04g0589600 Oryza sativa ssp. japonica HOM05D004141 ORTHO05D005416 1.1e-07 62.4 185 31.9
MCO01G083 Micromonas commoda HOM05D004141 ORTHO05D005416 2.4e-07 61.2 186 30.6
arahy.Tifrunner.gnm1.ann1.9BEE5S Arachis hypogaea HOM05D004141 ORTHO05D005416 2.0e-06 58.2 169 30.2
BraA03t11487Z Brassica rapa HOM05D000223 ORTHO05D001193 3.4e-06 57.4 46 71.7
Medtr1g104880 Medicago truncatula HOM05D004141 ORTHO05D005416 3.4e-06 57.4 293 23.9


User provided reference genes

Program Settings