Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR142G2990 Punica granatum HOM05D004263 ORTHO05D004931 0.0e+00 1961.8 987 100.0
Eucgr.K00914 Eucalyptus grandis HOM05D004263 ORTHO05D004931 0.0e+00 1792.7 988 90.1
TWI75G0058 Tripterygium wilfordii HOM05D004263 ORTHO05D004931 0.0e+00 1770.4 989 88.8
COL.COLO4_13682 Corchorus olitorius HOM05D004263 ORTHO05D004931 0.0e+00 1756.9 987 88.3
Manes.12G082900 Manihot esculenta HOM05D004263 ORTHO05D004931 0.0e+00 1755.3 989 87.7
Ciclev10014147m.g Citrus clementina HOM05D004263 ORTHO05D004931 0.0e+00 1752.3 989 87.8
CiPaw.03G169700 Carya illinoinensis HOM05D004263 ORTHO05D004931 0.0e+00 1744.9 990 87.4
GSVIVG01030005001 Vitis vinifera HOM05D004263 ORTHO05D004931 0.0e+00 1742.2 989 87.4
Prupe.3G231000 Prunus persica HOM05D004263 ORTHO05D004931 0.0e+00 1740.3 989 87.0
Thecc.02G171500 Theobroma cacao HOM05D004263 ORTHO05D004931 0.0e+00 1738.4 989 87.7
CANSAT64G2398 Cannabis sativa HOM05D004263 ORTHO05D004931 0.0e+00 1730.7 988 85.9
TAR627G0082 Trochodendron aralioides HOM05D004263 ORTHO05D004931 0.0e+00 1725.7 990 86.4
Gohir.A01G015400 Gossypium hirsutum HOM05D004263 ORTHO05D004931 0.0e+00 1724.9 989 85.9
QL08p037295 Quercus lobata HOM05D004263 ORTHO05D004931 0.0e+00 1724.5 986 86.6
RcHm_v2.0_Chr2g0161771 Rosa chinensis HOM05D004263 ORTHO05D004931 0.0e+00 1724.1 989 86.6
FvH4_6g44560 Fragaria vesca HOM05D004263 ORTHO05D004931 0.0e+00 1723.8 989 86.3
Gorai.002G017100 Gossypium raimondii HOM05D004263 ORTHO05D004931 0.0e+00 1721.4 989 86.0
Gohir.D01G015400 Gossypium hirsutum HOM05D004263 ORTHO05D004931 0.0e+00 1718.4 989 85.9
Cfa010655 Carpinus fangiana HOM05D004263 ORTHO05D004931 0.0e+00 1711.8 989 85.2
MD14G1065300 Malus domestica HOM05D004263 ORTHO05D004931 0.0e+00 1709.5 990 85.5
Potri.013G147600 Populus trichocarpa HOM05D004263 ORTHO05D004931 0.0e+00 1708.3 990 85.5
FAN14G1228 Fragaria x ananassa HOM05D004263 ORTHO05D004931 0.0e+00 1707.6 1013 84.2
FAN02G3638 Fragaria x ananassa HOM05D004263 ORTHO05D004931 0.0e+00 1706.4 1013 84.2
Hma1.2p1_0565F.1_g179560 Hydrangea macrophylla HOM05D004263 ORTHO05D004931 0.0e+00 1706.0 986 86.0
MD17G1084700 Malus domestica HOM05D004263 ORTHO05D004931 0.0e+00 1705.3 989 85.0
Thhalv10006686m.g Eutrema salsugineum HOM05D004263 ORTHO05D004931 0.0e+00 1704.1 990 84.5
Sp1g11070 Schrenkiella parvula HOM05D004263 ORTHO05D004931 0.0e+00 1703.7 990 84.4
CSS0035503 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 0.0e+00 1703.0 990 85.2
CSS0002238 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 0.0e+00 1702.6 999 84.7
CARHR012770 Cardamine hirsuta HOM05D004263 ORTHO05D004931 0.0e+00 1700.6 991 84.4
Lj3g0003932 Lotus japonicus HOM05D004263 ORTHO05D004931 0.0e+00 1700.6 990 85.5
A06p09160 Brassica napus HOM05D004263 ORTHO05D004931 0.0e+00 1696.8 992 84.1
THA.LOC104809434 Tarenaya hassleriana HOM05D004263 ORTHO05D004931 0.0e+00 1696.0 986 84.7
Actinidia39296 Actinidia chinensis HOM05D004263 ORTHO05D004931 0.0e+00 1689.9 990 84.1
BraA06t24102Z Brassica rapa HOM05D004263 ORTHO05D004931 0.0e+00 1689.1 1002 83.0
FAN09G1275 Fragaria x ananassa HOM05D004263 ORTHO05D004931 0.0e+00 1688.3 1013 83.3
Psat2g144400 Pisum sativum HOM05D004263 ORTHO05D004931 0.0e+00 1687.9 989 84.5
Glyma.13G301100 Glycine max HOM05D004263 ORTHO05D004931 0.0e+00 1687.5 988 84.7
Haze_13086 Corylus avellana HOM05D004263 ORTHO05D004931 0.0e+00 1687.2 1084 78.9
arahy.Tifrunner.gnm1.ann1.RA2UAB Arachis hypogaea HOM05D004263 ORTHO05D004931 0.0e+00 1686.4 1016 83.7
AL1G23830 Arabidopsis lyrata HOM05D004263 ORTHO05D004931 0.0e+00 1685.2 991 83.4
Carub.0001s1218 Capsella rubella HOM05D004263 ORTHO05D004931 0.0e+00 1685.2 990 83.6
Phvul.005G107700 Phaseolus vulgaris HOM05D004263 ORTHO05D004931 0.0e+00 1682.2 991 84.8
BolC5t29815H Brassica oleracea HOM05D004263 ORTHO05D004931 0.0e+00 1681.4 992 83.5
AT1G12470 Arabidopsis thaliana HOM05D004263 ORTHO05D004931 0.0e+00 1679.8 990 83.4
BcaB03g13185 Brassica carinata HOM05D004263 ORTHO05D004931 0.0e+00 1679.5 990 83.3
Solyc06g005080.4 Solanum lycopersicum HOM05D004263 ORTHO05D004931 0.0e+00 1678.3 989 83.8
Ca_01536_v3 Cicer arietinum L. HOM05D004263 ORTHO05D004931 0.0e+00 1676.0 989 84.5
CSS0005038 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 0.0e+00 1675.6 998 83.8
Sopen06g001070 Solanum pennellii HOM05D004263 ORTHO05D004931 0.0e+00 1675.2 989 83.8
Aa31LG1G2150 Aethionema arabicum HOM05D004263 ORTHO05D004931 0.0e+00 1672.9 997 83.7
A08p32810 Brassica napus HOM05D004263 ORTHO05D004931 0.0e+00 1670.6 1005 81.8
C05p10740 Brassica napus HOM05D004263 ORTHO05D004931 0.0e+00 1670.2 995 82.9
C08p15450 Brassica napus HOM05D004263 ORTHO05D004931 0.0e+00 1667.1 1005 82.0
Peaxi162Scf00255g01022 Petunia axillaris HOM05D004263 ORTHO05D004931 0.0e+00 1665.2 991 83.5
CSS0035062 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 0.0e+00 1662.9 991 83.8
CsaV3_7G004120 Cucumis sativus L. HOM05D004263 ORTHO05D004931 0.0e+00 1662.5 991 82.8
Medtr8g063380 Medicago truncatula HOM05D004263 ORTHO05D004931 0.0e+00 1661.4 1005 82.9
Sed0028127 Sechium edule HOM05D004263 ORTHO05D004931 0.0e+00 1658.7 989 82.5
vmacro09293 Vaccinium macrocarpon HOM05D004263 ORTHO05D004931 0.0e+00 1658.7 1027 81.4
BraA08t35204Z Brassica rapa HOM05D004263 ORTHO05D004931 0.0e+00 1657.1 1007 81.4
Glyma.12G201100 Glycine max HOM05D004263 ORTHO05D004931 0.0e+00 1657.1 988 83.7
arahy.Tifrunner.gnm1.ann1.0PC56D Arachis hypogaea HOM05D004263 ORTHO05D004931 0.0e+00 1653.6 1078 78.7
SGA_v2.0_scaffold90G27889 Striga asiatica HOM05D004263 ORTHO05D004931 0.0e+00 1645.6 994 82.5
Aqoxy1G01192 Aquilegia oxysepala HOM05D004263 ORTHO05D004931 0.0e+00 1642.1 992 82.3
Cc04_g12270 Coffea canephora HOM05D004263 ORTHO05D004931 0.0e+00 1639.0 997 81.6
Sabra13G0119200 Salix brachista HOM05D004263 ORTHO05D004931 0.0e+00 1637.5 990 82.6
Duzib248G0991 Durio zibethinus HOM05D004263 ORTHO05D004931 0.0e+00 1635.9 988 83.4
Migut.O00120 Erythranthe guttata HOM05D004263 ORTHO05D004931 0.0e+00 1634.0 989 81.6
ECA246G4434 Erigeron canadensis HOM05D004263 ORTHO05D004931 0.0e+00 1630.9 989 81.9
PSO801G0468 Papaver somniferum HOM05D004263 ORTHO05D004931 0.0e+00 1627.5 992 82.3
BolC8t49173H Brassica oleracea HOM05D004263 ORTHO05D004931 0.0e+00 1622.1 1040 78.1
PSO339G5244 Papaver somniferum HOM05D004263 ORTHO05D004931 0.0e+00 1621.7 989 82.0
Oeu001693.1 Olea europaea HOM05D004263 ORTHO05D004931 0.0e+00 1620.5 990 81.8
HanXRQChr07g0200651 Helianthus annuus HOM05D004263 ORTHO05D004931 0.0e+00 1609.7 978 81.6
Lalb_Chr22g0356351 Lupinus albus HOM05D004263 ORTHO05D004931 0.0e+00 1608.6 935 85.0
DCAR_009724 Daucus carota HOM05D004263 ORTHO05D004931 0.0e+00 1606.3 989 80.8
SalBow7G3995 Salvia bowleyana HOM05D004263 ORTHO05D004931 0.0e+00 1599.3 987 80.6
Ah.11g047230 Amaranthus hybridus HOM05D004263 ORTHO05D004931 0.0e+00 1598.9 990 80.4
EL10As1g23122 Beta vulgaris HOM05D004263 ORTHO05D004931 0.0e+00 1593.6 990 80.3
Haze_03591 Corylus avellana HOM05D004263 ORTHO05D004931 0.0e+00 1589.3 1027 78.6
AUR62034472 Chenopodium quinoa HOM05D004263 ORTHO05D004931 0.0e+00 1575.8 987 79.4
Nn2g15850 Nelumbo nucifera HOM05D004263 ORTHO05D004931 0.0e+00 1571.6 938 83.5
ClCG02G001300 Citrullus lanatus HOM05D004263 ORTHO05D004931 0.0e+00 1568.9 1020 77.8
Lsat_1_v5_gn_3_39980 Lactuca sativa HOM05D004263 ORTHO05D004931 0.0e+00 1561.6 966 80.4
Atru.chr6.3077 Acer truncatum HOM05D004263 ORTHO05D004931 0.0e+00 1555.0 924 83.9
HPP92_004167 Vanilla planifolia HOM05D004263 ORTHO05D004931 0.0e+00 1550.0 994 76.6
AUR62041769 Chenopodium quinoa HOM05D004263 ORTHO05D004931 0.0e+00 1507.3 990 76.9
Lj8C117G6 Lonicera japonica HOM05D004263 ORTHO05D004931 0.0e+00 1496.9 989 77.0
Sc08g0004410 Simmondsia chinensis HOM05D004263 ORTHO05D004931 0.0e+00 1496.9 897 82.5
BcaC05g25186 Brassica carinata HOM05D004263 ORTHO05D004931 0.0e+00 1494.9 849 86.3
Os08g0178100 Oryza sativa ssp. japonica HOM05D004263 ORTHO05D004931 0.0e+00 1444.1 988 72.7
Hma1.2p1_0565F.1_g179570 Hydrangea macrophylla HOM05D004263 ORTHO05D004931 0.0e+00 1404.8 818 86.2
CDE05G0585 Ceratophyllum demersum HOM05D004263 ORTHO05D004931 0.0e+00 1402.9 994 71.5
Cfa014543 Carpinus fangiana HOM05D004263 ORTHO05D004931 0.0e+00 1392.1 786 86.8
Actinidia30490 Actinidia chinensis HOM05D004263 ORTHO05D004931 0.0e+00 1370.1 793 86.0
Cpa.g.sc34.88 Carica papaya HOM05D004263 ORTHO05D004931 0.0e+00 1368.2 772 88.2
unitig_0.g1433 Utricularia gibba HOM05D004263 ORTHO05D004931 0.0e+00 1345.5 850 79.2
MBI02_g13236_MAGBIO Magnolia biondii HOM05D004263 ORTHO05D004931 0.0e+00 1342.0 793 84.7
MELO3C018764.2 Cucumis melo HOM05D004263 ORTHO05D004931 0.0e+00 1327.8 793 83.0
Rhsim04G0063000 Rhododendron simsii HOM05D004263 ORTHO05D004931 0.0e+00 1326.2 762 87.1
ATR0737G173 Amborella trichopoda HOM05D004263 ORTHO05D004931 0.0e+00 1320.4 951 70.5
CSS0039065 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 0.0e+00 1313.9 995 69.8
MSTRG.11470 Avicennia marina HOM05D004263 ORTHO05D004931 0.0e+00 1271.9 764 83.5
Medtr5g026090 Medicago truncatula HOM05D004263 ORTHO05D004931 0.0e+00 1214.9 778 80.1
Mapoly0011s0120 Marchantia polymorpha HOM05D004263 ORTHO05D004931 0.0e+00 1192.9 983 60.8
Pp3c14_1240 Physcomitrium patens HOM05D004263 ORTHO05D004931 0.0e+00 1177.9 992 60.0
Lj1C736G5 Lonicera japonica HOM05D004263 ORTHO05D004931 0.0e+00 1177.2 761 79.0
QL08p037237 Quercus lobata HOM05D004263 ORTHO05D004931 1.0e-297 1026.9 647 80.1
SMO239G0082 Selaginella moellendorffii HOM05D004263 ORTHO05D004931 7.2e-296 1020.8 988 52.8
Nitab4.5_0001514g0010 Nicotiana tabacum HOM05D004263 ORTHO05D004931 1.2e-295 1020.0 612 82.8
AagrBONN_evm.TU.Sc2ySwM_228.3812 Anthoceros agrestis HOM05D004263 ORTHO05D004931 1.4e-291 1006.5 791 63.0
Zm00001eb412950 Zea mays HOM05D004263 ORTHO05D004931 3.1e-291 1005.4 675 75.7
Dinv23716 Davidia involucrata HOM05D004263 ORTHO05D004931 7.2e-288 994.2 559 88.9
Nitab4.5_0000025g0490 Nicotiana tabacum HOM05D004263 ORTHO05D004931 2.7e-258 896.0 575 78.6
TPR.G26159 Trifolium pratense HOM05D004263 ORTHO05D004931 1.6e-250 870.2 520 83.3
SHI10474 Sapria himalayana HOM05D004263 ORTHO05D004931 5.9e-250 868.2 612 70.3
Oeu001695.1 Olea europaea HOM05D004263 ORTHO05D004931 1.2e-247 860.5 517 83.6
VMungo1080G0385 Vigna mungo HOM05D004263 ORTHO05D004931 2.4e-203 713.4 418 82.3
Dinv23715 Davidia involucrata HOM05D004263 ORTHO05D004931 3.9e-169 599.7 336 86.6
Nitab4.5_0001514g0020 Nicotiana tabacum HOM05D004263 ORTHO05D004931 1.5e-155 554.7 336 82.4
Nitab4.5_0000025g0510 Nicotiana tabacum HOM05D004263 ORTHO05D004931 1.8e-145 521.2 282 89.4
PRCOL_00001544 Prasinoderma coloniale HOM05D004263 ORTHO05D004931 2.5e-123 447.6 1079 31.2
CAN.G224.16 Capsicum annuum HOM05D004263 ORTHO05D004931 1.1e-121 442.2 249 88.0
Cfa022578 Carpinus fangiana HOM05D004263 ORTHO05D004931 1.2e-104 385.6 1005 29.1
CAN.G2148.2 Capsicum annuum HOM05D004263 ORTHO05D004931 2.0e-104 384.8 269 75.1
MSTRG.11471 Avicennia marina HOM05D004263 ORTHO05D004931 8.4e-103 379.4 230 76.1
CAN.G2148.1 Capsicum annuum HOM05D004263 ORTHO05D004931 5.1e-100 370.2 231 74.9
Cre07.g328550 Chlamydomonas reinhardtii HOM05D004263 ORTHO05D004931 1.9e-99 368.2 1269 26.9
BcaC05g25136 Brassica carinata HOM05D004263 ORTHO05D004931 9.9e-96 355.9 207 81.2
Lj1C736T2 Lonicera japonica HOM05D004263 ORTHO05D004931 7.1e-94 349.7 201 82.1
CAN.G224.18 Capsicum annuum HOM05D004263 ORTHO05D004931 7.1e-86 323.2 231 67.5
PGSC0003DMG400025399 Solanum tuberosum HOM05D004263 ORTHO05D004931 2.4e-81 308.1 176 83.0
TPR.G28496 Trifolium pratense HOM05D004086 ORTHO05D004641 8.4e-79 299.7 197 75.6
CBR_g50947 Chara braunii HOM05D004263 ORTHO05D004931 8.7e-76 289.7 307 52.1
CBR_g40703 Chara braunii HOM05D004263 ORTHO05D004931 3.4e-72 277.7 442 39.4
Cpa.g.sc34.89 Carica papaya HOM05D004263 ORTHO05D004931 1.9e-70 271.9 153 84.3
CSS0037177 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 3.0e-68 264.6 208 65.9
Oeu001692.1 Olea europaea HOM05D004263 ORTHO05D004931 1.8e-57 228.8 153 71.2
Medtr8g471030 Medicago truncatula HOM05D004263 ORTHO05D004931 7.7e-56 223.4 127 81.1
Atru.chr5.268 Acer truncatum HOM05D004263 ORTHO05D004931 1.8e-52 212.2 134 71.6
Atru.chr3.3152 Acer truncatum HOM05D004263 ORTHO05D004931 3.6e-45 188.0 120 75.8
CBR_g40701 Chara braunii HOM05D004263 ORTHO05D004931 4.4e-43 181.0 163 60.1
CSS0002414 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 1.8e-41 175.6 174 61.5
SEGI_30776 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 2.3e-36 158.7 113 68.1
SEGI_15765 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 3.0e-36 158.3 106 72.6
SEGI_40242 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 4.0e-36 157.9 94 78.7
CAN.G224.15 Capsicum annuum HOM05D004263 ORTHO05D004931 1.4e-33 149.4 88 79.5
SEGI_16142 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 5.5e-30 137.5 73 93.2
C09p48310 Brassica napus HOM05D005294 ORTHO05D006720 3.4e-27 128.3 131 59.5
CAN.G224.17 Capsicum annuum HOM05D004263 ORTHO05D004931 3.4e-27 128.3 75 81.3
BolC9t57681H Brassica oleracea HOM05D005294 ORTHO05D006720 9.8e-27 126.7 114 64.0
CAN.G2148.3 Capsicum annuum HOM05D004263 ORTHO05D004931 1.3e-26 126.3 75 80.0
CAN.G666.1 Capsicum annuum HOM05D004263 ORTHO05D004931 2.2e-26 125.6 99 65.7
SEGI_22414 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 1.4e-25 122.9 108 62.0
SEGI_10945 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 5.4e-25 120.9 80 67.5
SEGI_06467 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 9.2e-25 120.2 91 70.3
CSS0009942 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 7.3e-22 110.5 80 77.5
MD02G1222100 Malus domestica HOM05D004263 ORTHO05D004931 2.2e-18 99.0 52 86.5
Nitab4.5_0000025g0500 Nicotiana tabacum HOM05D004263 ORTHO05D004931 7.0e-17 94.0 54 81.5
unitig_0.g1434 Utricularia gibba HOM05D004263 ORTHO05D004931 2.3e-15 89.0 87 55.2
SEGI_34242 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 1.9e-14 85.9 102 48.0
MCO10G067 Micromonas commoda HOM05D004263 ORTHO05D004931 6.2e-13 80.9 224 25.9
arahy.Tifrunner.gnm1.ann1.J1BTWL Arachis hypogaea HOM05D004263 ORTHO05D004931 1.4e-12 79.7 100 45.0
Manes.13G151750 Manihot esculenta HOM05D004263 ORTHO05D004931 1.4e-12 79.7 161 35.4
SEGI_32704 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 3.1e-12 78.6 53 58.5
TPR.G27092 Trifolium pratense HOM05D004263 ORTHO05D004931 7.8e-08 63.9 50 64.0
Glyma.08G214950 Glycine max HOM05D004263 ORTHO05D004931 6.6e-07 60.8 47 66.0


User provided reference genes

Program Settings