Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR142G2973 Punica granatum HOM05D006287 ORTHO05D008192 3.1e-178 629.8 487 100.0
CSS0042508 Camellia sinensis var. sinensis HOM05D006287 ORTHO05D008192 6.3e-54 216.9 420 46.4
Thecc.09G149000 Theobroma cacao HOM05D006287 ORTHO05D008192 2.6e-52 211.5 498 44.8
Ciclev10010816m.g Citrus clementina HOM05D006287 ORTHO05D008192 5.5e-50 203.8 483 51.6
Atru.chr7.2375 Acer truncatum HOM05D006287 ORTHO05D008192 1.6e-46 192.2 486 51.0
Haze_21571 Corylus avellana HOM05D006287 ORTHO05D008192 8.2e-46 189.9 259 42.1
Oeu008766.1 Olea europaea HOM05D006287 ORTHO05D008192 2.4e-45 188.3 470 45.1
CiPaw.06G059600 Carya illinoinensis HOM05D006287 ORTHO05D008192 1.4e-42 179.1 496 46.0
MSTRG.25851 Avicennia marina HOM05D006287 ORTHO05D008192 5.1e-40 170.6 473 37.8
CSS0048694 Camellia sinensis var. sinensis HOM05D006287 ORTHO05D008192 7.7e-36 156.8 182 42.9
Cc11_g01810 Coffea canephora HOM05D006287 ORTHO05D008192 5.5e-34 150.6 164 43.9
SGA_v2.0_scaffold22G09931 Striga asiatica HOM05D006287 ORTHO05D008192 7.9e-33 146.7 476 38.2
PGSC0003DMG400023145 Solanum tuberosum HOM05D006287 ORTHO05D008192 1.5e-31 142.5 226 35.8
Oeu032501.2 Olea europaea HOM05D006287 ORTHO05D008192 4.4e-31 141.0 252 36.5
Hma1.2p1_0007F.1_g005110 Hydrangea macrophylla HOM05D006287 ORTHO05D008192 5.7e-31 140.6 164 42.7
CAN.G98.23 Capsicum annuum HOM05D006287 ORTHO05D008192 7.4e-31 140.2 175 39.4
Duzib168G0154 Durio zibethinus HOM05D006287 ORTHO05D008192 2.2e-30 138.7 211 39.3
DCAR_006447 Daucus carota HOM05D006287 ORTHO05D008192 3.7e-30 137.9 275 30.5
Nn5g27729 Nelumbo nucifera HOM05D006287 ORTHO05D008192 3.7e-30 137.9 212 37.7
Prupe.6G275900 Prunus persica HOM05D006287 ORTHO05D008192 4.8e-30 137.5 235 37.0
Sopen08g021010 Solanum pennellii HOM05D006287 ORTHO05D008192 8.2e-30 136.7 182 38.5
Cpa.g.sc1.269 Carica papaya HOM05D006287 ORTHO05D008192 2.4e-29 135.2 141 46.8
Solyc08g067060.2 Solanum lycopersicum HOM05D006287 ORTHO05D008192 2.4e-29 135.2 183 37.7
Dinv11617 Davidia involucrata HOM05D006287 ORTHO05D008192 1.2e-28 132.9 125 50.4
VMungo0331G1641 Vigna mungo HOM05D006287 ORTHO05D008192 1.2e-28 132.9 180 36.7
GSVIVG01035807001 Vitis vinifera HOM05D006287 ORTHO05D008192 4.5e-28 131.0 121 47.9
Nitab4.5_0001669g0010 Nicotiana tabacum HOM05D006287 ORTHO05D008192 1.0e-27 129.8 242 33.5
CANSAT11G2472 Cannabis sativa HOM05D006287 ORTHO05D008192 2.9e-27 128.3 156 42.3
QL08p000602 Quercus lobata HOM05D006287 ORTHO05D008192 2.9e-27 128.3 193 35.8
Eucgr.I01690 Eucalyptus grandis HOM05D006287 ORTHO05D008192 6.5e-27 127.1 186 40.9
Nitab4.5_0000151g0190 Nicotiana tabacum HOM05D006287 ORTHO05D008192 8.5e-27 126.7 205 35.1
TWI63G1321 Tripterygium wilfordii HOM05D006287 ORTHO05D008192 8.5e-27 126.7 217 35.0
QL05p049822 Quercus lobata HOM05D006287 ORTHO05D008192 1.5e-26 125.9 201 37.3
ClCG02G013330 Citrullus lanatus HOM05D006287 ORTHO05D008192 1.9e-26 125.6 477 40.0
AT3G54980 Arabidopsis thaliana HOM05D006287 ORTHO05D008192 3.2e-26 124.8 474 42.6
Gorai.011G097400 Gossypium raimondii HOM05D006287 ORTHO05D008192 3.2e-26 124.8 201 34.3
Nn3g20345 Nelumbo nucifera HOM05D006287 ORTHO05D008192 3.2e-26 124.8 175 39.4
Psat7g237040 Pisum sativum HOM05D006287 ORTHO05D008192 4.2e-26 124.4 153 38.6
Sc25g0000480 Simmondsia chinensis HOM05D006287 ORTHO05D008192 4.2e-26 124.4 267 30.7
Duzib150G0458 Durio zibethinus HOM05D006287 ORTHO05D008192 5.5e-26 124.0 217 35.9
A09p47970 Brassica napus HOM05D006287 ORTHO05D008192 9.4e-26 123.2 468 45.5
TPR.G5606 Trifolium pratense HOM05D006287 ORTHO05D008192 1.2e-25 122.9 238 35.3
arahy.Tifrunner.gnm1.ann1.VPFI8Q Arachis hypogaea HOM05D006287 ORTHO05D008192 2.7e-25 121.7 198 34.3
Lalb_Chr07g0185941 Lupinus albus HOM05D006287 ORTHO05D008192 8.0e-25 120.2 163 39.9
MD12G1164900 Malus domestica HOM05D006287 ORTHO05D008192 8.0e-25 120.2 185 36.8
COL.COLO4_23984 Corchorus olitorius HOM05D006287 ORTHO05D008192 1.4e-24 119.4 204 34.8
CARHR164980 Cardamine hirsuta HOM05D006287 ORTHO05D008192 1.8e-24 119.0 471 42.0
AL5G36090 Arabidopsis lyrata HOM05D006287 ORTHO05D008192 3.0e-24 118.2 476 45.2
Ca_26550_v3 Cicer arietinum L. HOM05D006287 ORTHO05D008192 8.8e-24 116.7 119 42.9
Actinidia15687 Actinidia chinensis HOM05D006287 ORTHO05D008192 1.1e-23 116.3 154 38.3
BraA09t40252Z Brassica rapa HOM05D006287 ORTHO05D008192 1.1e-23 116.3 466 45.5
MD04G1151000 Malus domestica HOM05D006287 ORTHO05D008192 1.5e-23 115.9 132 43.2
MSTRG.11775 Avicennia marina HOM05D006287 ORTHO05D008192 2.0e-23 115.5 240 32.1
Sp4g21560 Schrenkiella parvula HOM05D006287 ORTHO05D008192 3.3e-23 114.8 298 26.8
SpUn0018_0110 Schrenkiella parvula HOM05D006287 ORTHO05D008192 3.3e-23 114.8 298 26.8
THA.LOC104824237 Tarenaya hassleriana HOM05D006287 ORTHO05D008192 7.5e-23 113.6 237 32.5
LjContig00081g0002723 Lotus japonicus HOM05D006287 ORTHO05D008192 1.3e-22 112.8 121 37.2
Sed0001816 Sechium edule HOM05D006287 ORTHO05D008192 1.3e-22 112.8 441 50.3
HPP92_023171 Vanilla planifolia HOM05D006287 ORTHO05D008192 2.2e-22 112.1 211 34.6
BolC8t50627H Brassica oleracea HOM05D006287 ORTHO05D008192 3.7e-22 111.3 472 35.6
CsaV3_2G017510 Cucumis sativus L. HOM05D006287 ORTHO05D008192 1.8e-21 109.0 475 40.6
C08p30210 Brassica napus HOM05D006287 ORTHO05D008192 2.4e-21 108.6 472 35.2
Phvul.009G090400 Phaseolus vulgaris HOM05D006287 ORTHO05D008192 2.4e-21 108.6 123 39.8
Aa31sc33G30 Aethionema arabicum HOM05D006287 ORTHO05D008192 5.3e-21 107.5 181 32.6
BcaB01g00140 Brassica carinata HOM05D006287 ORTHO05D008192 9.1e-21 106.7 263 31.2
BcaNung04649 Brassica carinata HOM05D006287 ORTHO05D008192 9.1e-21 106.7 289 30.1
TPR.G5411 Trifolium pratense HOM05D008207 ORTHO05D010373 1.2e-20 106.3 107 43.0
Medtr4g076540 Medicago truncatula HOM05D006287 ORTHO05D008192 1.6e-20 105.9 118 39.8
Potri.006G250700 Populus trichocarpa HOM05D006287 ORTHO05D008192 1.6e-20 105.9 204 32.4
AUR62015978 Chenopodium quinoa HOM05D006287 ORTHO05D008192 2.0e-20 105.5 310 27.1
Aqoxy7G02057 Aquilegia oxysepala HOM05D006287 ORTHO05D008192 3.5e-20 104.8 169 33.7
AUR62021186 Chenopodium quinoa HOM05D006287 ORTHO05D008192 4.5e-20 104.4 225 29.8
RcHm_v2.0_Chr7g0216391 Rosa chinensis HOM05D006287 ORTHO05D008192 5.9e-20 104.0 149 36.2
RcHm_v2.0_Chr4g0410561 Rosa chinensis HOM05D006287 ORTHO05D008192 1.0e-19 103.2 361 50.1
Sabra06G0196000 Salix brachista HOM05D001686 ORTHO05D008192 1.0e-19 103.2 235 29.8
Ah.13g068920 Amaranthus hybridus HOM05D006287 ORTHO05D008192 2.9e-19 101.7 240 29.6
Thhalv10010921m.g Eutrema salsugineum HOM05D006287 ORTHO05D008192 5.0e-19 100.9 237 32.9
MBI08_g04815_MAGBIO Magnolia biondii HOM05D006287 ORTHO05D008192 1.9e-18 99.0 133 40.6
Lj7C718G17 Lonicera japonica HOM05D006287 ORTHO05D008192 3.2e-18 98.2 156 37.2
AT2G39230 Arabidopsis thaliana HOM05D006287 ORTHO05D008192 4.2e-18 97.8 295 31.5
Sed0018262 Sechium edule HOM05D006287 ORTHO05D008192 4.2e-18 97.8 227 29.5
Glyma.07G068500 Glycine max HOM05D006287 ORTHO05D008192 5.5e-18 97.4 122 35.2
Peaxi162Scf00341g00062 Petunia axillaris HOM05D006287 ORTHO05D008192 2.1e-17 95.5 120 37.5
FvH4_5g25890 Fragaria vesca HOM05D006287 ORTHO05D008192 4.7e-17 94.4 139 36.0
FAN18G3351 Fragaria x ananassa HOM05D006287 ORTHO05D008192 4.7e-17 94.4 139 36.0
ATR0782G042 Amborella trichopoda HOM05D006287 ORTHO05D008192 1.8e-16 92.4 240 29.6
DCAR_006446 Daucus carota HOM05D006287 ORTHO05D008192 3.0e-16 91.7 218 29.8
CDE03G0083 Ceratophyllum demersum HOM05D006287 ORTHO05D008192 8.8e-16 90.1 149 32.2
Nitab4.5_0008089g0010 Nicotiana tabacum HOM05D006287 ORTHO05D008192 1.5e-15 89.4 110 40.0
MELO3C020947.2 Cucumis melo HOM05D006287 ORTHO05D008192 2.6e-15 88.6 121 33.9
Thhalv10017602m.g Eutrema salsugineum HOM05D006287 ORTHO05D008192 2.6e-15 88.6 243 28.0
CAN.G1030.29 Capsicum annuum HOM05D006287 ORTHO05D008192 3.4e-15 88.2 112 40.2
Hund04746 Selenicereus undatus HOM05D006287 ORTHO05D008192 4.4e-15 87.8 143 35.7
Gohir.D10G088500 Gossypium hirsutum HOM05D006287 ORTHO05D008192 1.3e-14 86.3 291 61.9
THA.LOC104809984 Tarenaya hassleriana HOM05D006287 ORTHO05D008192 1.7e-14 85.9 201 30.8
AUR62021185 Chenopodium quinoa HOM05D006287 ORTHO05D008192 2.8e-14 85.1 329 24.3
MBI01_g07128_MAGBIO Magnolia biondii HOM05D006287 ORTHO05D008192 7.0e-13 80.5 122 36.9
Carub.0005s2160 Capsella rubella HOM05D006287 ORTHO05D008192 2.7e-12 78.6 201 30.3
AL4G36540 Arabidopsis lyrata HOM05D006287 ORTHO05D008192 7.7e-12 77.0 155 29.0
Gohir.A10G099700 Gossypium hirsutum HOM05D006287 ORTHO05D008192 2.2e-11 75.5 266 55.3
ATR0782G035 Amborella trichopoda HOM05D006287 ORTHO05D008192 1.5e-10 72.8 121 30.6
AUR62015977 Chenopodium quinoa HOM05D006287 ORTHO05D008192 1.5e-10 72.8 259 23.9
Carub.0004s2128 Capsella rubella HOM05D006287 ORTHO05D008192 5.5e-10 70.9 129 31.0
FAN08G1130 Fragaria x ananassa HOM05D006287 ORTHO05D008192 7.2e-10 70.5 51 56.9
HanXRQChr02g0050751 Helianthus annuus HOM05D006287 ORTHO05D008192 7.2e-10 70.5 51 56.9
RcHm_v2.0_Chr6g0264781 Rosa chinensis HOM05D006287 ORTHO05D008192 7.2e-10 70.5 116 35.3
EL10Ac3g05636 Beta vulgaris HOM05D006287 ORTHO05D008192 1.4e-08 66.2 122 33.6
Nitab4.5_0003498g0100 Nicotiana tabacum HOM05D006287 ORTHO05D008192 1.4e-08 66.2 73 45.2
AT2G02150 Arabidopsis thaliana HOM05D007496 ORTHO05D009479 3.0e-08 65.1 174 26.4
Lsat_1_v5_gn_6_22161 Lactuca sativa HOM05D006287 ORTHO05D008192 3.0e-08 65.1 155 27.7
Aqoxy5G03884 Aquilegia oxysepala HOM05D007496 ORTHO05D009479 4.0e-08 64.7 156 27.6
AL5G11430 Arabidopsis lyrata HOM05D007496 ORTHO05D009479 6.8e-08 63.9 174 26.4
MBI02_g19249_MAGBIO Magnolia biondii HOM05D000286 ORTHO05D000170 1.5e-07 62.8 134 31.3
Carub.0005s0122 Capsella rubella HOM05D007496 ORTHO05D009479 2.0e-07 62.4 176 25.0
ECA233G4604 Erigeron canadensis HOM05D005914 ORTHO05D007361 2.0e-07 62.4 50 50.0
TWI63G0498 Tripterygium wilfordii HOM05D002890 ORTHO05D009847 2.0e-07 62.4 153 26.1
Atru.chr11.1049 Acer truncatum HOM05D007496 ORTHO05D009479 2.6e-07 62.0 161 24.8
SEGI_04297 Sequoiadendron giganteum HOM05D007212 ORTHO05D009094 2.6e-07 62.0 170 25.3
Manes.10G064000 Manihot esculenta HOM05D007496 ORTHO05D009479 3.4e-07 61.6 174 25.9
SEGI_12665 Sequoiadendron giganteum HOM05D007455 ORTHO05D009431 7.5e-07 60.5 157 28.7
Lalb_Chr13g0293071 Lupinus albus HOM05D007496 ORTHO05D009479 9.8e-07 60.1 161 26.7
Sp2g13565 Schrenkiella parvula HOM05D007496 ORTHO05D009479 9.8e-07 60.1 174 24.1
EL10Ac6g15406 Beta vulgaris HOM05D007496 ORTHO05D009479 1.3e-06 59.7 162 28.4
Lj3A877T95 Lonicera japonica HOM05D007426 ORTHO05D009167 1.3e-06 59.7 165 31.5
Oeu030203.1 Olea europaea HOM05D006287 ORTHO05D000003 1.3e-06 59.7 283 21.6
TAR624G0355 Trochodendron aralioides HOM05D002890 ORTHO05D009847 1.3e-06 59.7 154 27.3
Nn1g01012 Nelumbo nucifera HOM05D007496 ORTHO05D009479 1.7e-06 59.3 155 27.1
BcaNung04644 Brassica carinata HOM05D006287 ORTHO05D008192 2.2e-06 58.9 166 30.1
Aa31LG2G7790 Aethionema arabicum HOM05D007496 ORTHO05D009479 2.8e-06 58.5 168 25.6
MSTRG.10708 Avicennia marina HOM05D007291 ORTHO05D009038 3.7e-06 58.2 157 26.1
PSO339G3988 Papaver somniferum HOM05D007212 ORTHO05D009094 4.9e-06 57.8 185 24.9
SGA_v2.0_scaffold169G38601 Striga asiatica HOM05D007496 ORTHO05D009479 4.9e-06 57.8 164 27.4
AUR62009526 Chenopodium quinoa HOM05D005764 ORTHO05D006600 6.3e-06 57.4 155 25.2
Thhalv10003688m.g Eutrema salsugineum HOM05D007496 ORTHO05D009479 6.3e-06 57.4 174 23.0
Eucgr.J02064 Eucalyptus grandis HOM05D007212 ORTHO05D009094 8.3e-06 57.0 221 27.1


User provided reference genes

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