Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR142G2770 Punica granatum HOM05D002306 ORTHO05D005773 4.8e-227 790.8 395 100.0
Eucgr.K00394 Eucalyptus grandis HOM05D002306 ORTHO05D005773 1.3e-171 606.7 397 75.3
CiPaw.06G045200 Carya illinoinensis HOM05D002306 ORTHO05D005773 1.1e-167 593.6 406 71.4
GSVIVG01038567001 Vitis vinifera HOM05D002306 ORTHO05D005773 3.6e-166 588.6 400 71.5
MD07G1293200 Malus domestica HOM05D002306 ORTHO05D005773 8.1e-166 587.4 405 71.4
Dinv29264 Davidia involucrata HOM05D002306 ORTHO05D005773 2.4e-165 585.9 404 70.0
Cfa016243 Carpinus fangiana HOM05D002306 ORTHO05D005773 4.0e-165 585.1 406 72.4
QL09p008623 Quercus lobata HOM05D002306 ORTHO05D005773 1.3e-163 580.1 383 72.6
MD01G1222600 Malus domestica HOM05D002306 ORTHO05D005773 2.2e-163 579.3 406 70.4
CANSAT21G2187 Cannabis sativa HOM05D002306 ORTHO05D005773 8.4e-163 577.4 404 70.0
Prupe.2G313000 Prunus persica HOM05D002306 ORTHO05D005773 5.4e-162 574.7 390 71.8
Nn3g18949 Nelumbo nucifera HOM05D002306 ORTHO05D005773 3.5e-161 572.0 405 69.1
FvH4_7g31980 Fragaria vesca HOM05D002306 ORTHO05D005773 1.7e-160 569.7 402 70.1
FAN01G0065 Fragaria x ananassa HOM05D002306 ORTHO05D005773 6.6e-160 567.8 402 69.9
Duzib084G0543 Durio zibethinus HOM05D002306 ORTHO05D005773 1.1e-159 567.0 404 70.0
FAN03G1878 Fragaria x ananassa HOM05D002306 ORTHO05D005773 1.1e-159 567.0 404 69.3
FAN06G4818 Fragaria x ananassa HOM05D002306 ORTHO05D005773 1.9e-159 566.2 402 69.7
vmacro10129 Vaccinium macrocarpon HOM05D002306 ORTHO05D005773 3.3e-159 565.5 402 69.2
RcHm_v2.0_Chr1g0381481 Rosa chinensis HOM05D002306 ORTHO05D005773 9.6e-159 563.9 407 69.3
FAN10G2791 Fragaria x ananassa HOM05D002306 ORTHO05D005773 3.6e-158 562.0 430 66.0
TWI39G0548 Tripterygium wilfordii HOM05D002306 ORTHO05D005773 6.2e-158 561.2 409 68.7
Nn1g00292 Nelumbo nucifera HOM05D002306 ORTHO05D005773 8.1e-158 560.8 407 67.3
Duzib205G1406 Durio zibethinus HOM05D002306 ORTHO05D005773 1.8e-157 559.7 404 69.3
Nitab4.5_0005491g0070 Nicotiana tabacum HOM05D002306 ORTHO05D005773 3.1e-157 558.9 404 69.6
Haze_00198 Corylus avellana HOM05D002306 ORTHO05D005773 4.0e-157 558.5 388 72.4
Glyma.19G065800 Glycine max HOM05D002306 ORTHO05D005773 4.0e-157 558.5 389 71.0
CSS0036676 Camellia sinensis var. sinensis HOM05D002306 ORTHO05D005773 5.3e-157 558.1 407 67.8
FAN10G0091 Fragaria x ananassa HOM05D002306 ORTHO05D005773 5.3e-157 558.1 430 65.8
VMungo0647G1725 Vigna mungo HOM05D002306 ORTHO05D005773 5.3e-157 558.1 389 69.7
Nitab4.5_0000548g0060 Nicotiana tabacum HOM05D002306 ORTHO05D005773 6.9e-157 557.8 404 68.3
THA.LOC104799971 Tarenaya hassleriana HOM05D002306 ORTHO05D005773 1.2e-156 557.0 406 67.7
Glyma.14G162400 Glycine max HOM05D002306 ORTHO05D005773 1.5e-156 556.6 401 68.8
ClCG01G000390 Citrullus lanatus HOM05D002306 ORTHO05D005773 2.0e-156 556.2 392 69.1
Solyc03g083010.3 Solanum lycopersicum HOM05D002306 ORTHO05D005773 3.4e-156 555.4 404 69.6
Sopen03g022820 Solanum pennellii HOM05D002306 ORTHO05D005773 3.8e-155 552.0 404 69.3
Cc02_g01380 Coffea canephora HOM05D002306 ORTHO05D005773 4.9e-155 551.6 405 67.4
Phvul.001G075000 Phaseolus vulgaris HOM05D002306 ORTHO05D005773 6.4e-155 551.2 389 68.4
PGSC0003DMG401018530 Solanum tuberosum HOM05D002306 ORTHO05D005773 8.4e-155 550.8 404 69.6
Thecc.03G200900 Theobroma cacao HOM05D002306 ORTHO05D005773 8.4e-155 550.8 410 66.6
Potri.012G017100 Populus trichocarpa HOM05D002306 ORTHO05D005773 1.1e-154 550.4 391 70.6
Actinidia06142 Actinidia chinensis HOM05D002306 ORTHO05D005773 5.4e-154 548.1 404 66.3
Lalb_Chr01g0013731 Lupinus albus HOM05D002306 ORTHO05D005773 5.4e-154 548.1 383 68.4
Manes.01G185000 Manihot esculenta HOM05D002306 ORTHO05D005773 5.4e-154 548.1 408 67.4
Peaxi162Scf00740g00143 Petunia axillaris HOM05D002306 ORTHO05D005773 7.1e-154 547.7 404 67.8
CAN.G481.26 Capsicum annuum HOM05D002306 ORTHO05D005773 1.2e-153 547.0 404 67.8
MELO3C005890.2 Cucumis melo HOM05D002306 ORTHO05D005773 1.2e-153 547.0 405 66.4
AT5G53050 Arabidopsis thaliana HOM05D002306 ORTHO05D005773 2.1e-153 546.2 405 66.9
CARHR266070 Cardamine hirsuta HOM05D002306 ORTHO05D005773 2.1e-153 546.2 406 66.0
CiPaw.05G198100 Carya illinoinensis HOM05D002306 ORTHO05D005773 3.5e-153 545.4 357 74.8
Rhsim09G0206400 Rhododendron simsii HOM05D002306 ORTHO05D005773 6.0e-153 544.7 403 66.0
AL8G27680 Arabidopsis lyrata HOM05D002306 ORTHO05D005773 1.0e-152 543.9 448 61.8
Ciclev10020415m.g Citrus clementina HOM05D002306 ORTHO05D005773 1.3e-152 543.5 402 67.4
Migut.F00200 Erythranthe guttata HOM05D002306 ORTHO05D005773 1.3e-152 543.5 387 68.5
Aa31LG3G9420 Aethionema arabicum HOM05D002306 ORTHO05D005773 3.0e-152 542.3 444 61.3
CsaV3_5G000460 Cucumis sativus L. HOM05D002306 ORTHO05D005773 3.0e-152 542.3 405 65.7
Gorai.008G267900 Gossypium raimondii HOM05D002306 ORTHO05D005773 3.9e-152 542.0 400 66.5
SalBow4G3229 Salvia bowleyana HOM05D002306 ORTHO05D005773 8.7e-152 540.8 415 65.1
Gohir.D12G249800 Gossypium hirsutum HOM05D002306 ORTHO05D005773 1.1e-151 540.4 400 66.2
Gohir.A12G249000 Gossypium hirsutum HOM05D002306 ORTHO05D005773 1.5e-151 540.0 400 66.2
Oeu037052.1 Olea europaea HOM05D002306 ORTHO05D005773 2.5e-151 539.3 405 67.7
EL10Ac3g05271 Beta vulgaris HOM05D002306 ORTHO05D005773 3.3e-151 538.9 401 66.8
Thhalv10013609m.g Eutrema salsugineum HOM05D002306 ORTHO05D005773 4.3e-151 538.5 405 66.2
BraA03t10835Z Brassica rapa HOM05D002306 ORTHO05D005773 5.6e-151 538.1 407 64.4
Carub.0008s1325 Capsella rubella HOM05D002306 ORTHO05D005773 7.4e-151 537.7 405 65.7
Hund11654 Selenicereus undatus HOM05D002306 ORTHO05D005773 7.4e-151 537.7 396 67.2
Sed0011455 Sechium edule HOM05D002306 ORTHO05D005773 1.3e-150 537.0 399 66.7
Potri.015G011300 Populus trichocarpa HOM05D002306 ORTHO05D005773 4.8e-150 535.0 414 65.0
A03p15450 Brassica napus HOM05D002306 ORTHO05D005773 8.1e-150 534.3 407 63.9
BcaB01g04217 Brassica carinata HOM05D002306 ORTHO05D005773 1.1e-149 533.9 406 64.5
BraA03t10837Z Brassica rapa HOM05D002306 ORTHO05D005773 6.9e-149 531.2 413 63.2
PSO135G0144 Papaver somniferum HOM05D002306 ORTHO05D005773 1.2e-148 530.4 399 65.2
PSO384G1073 Papaver somniferum HOM05D002306 ORTHO05D005773 2.0e-148 529.6 398 64.8
Manes.05G190400 Manihot esculenta HOM05D002306 ORTHO05D005773 2.6e-148 529.3 340 75.6
A03p15420 Brassica napus HOM05D002306 ORTHO05D005773 4.5e-148 528.5 406 64.0
DCAR_020335 Daucus carota HOM05D002306 ORTHO05D005773 4.5e-148 528.5 398 64.1
Aqoxy6G02068 Aquilegia oxysepala HOM05D002306 ORTHO05D005773 5.8e-148 528.1 406 63.3
Eucgr.A01449 Eucalyptus grandis HOM05D002306 ORTHO05D005773 5.8e-148 528.1 394 65.5
C03p18010 Brassica napus HOM05D002306 ORTHO05D005773 1.3e-147 526.9 406 63.5
BolC3t14206H Brassica oleracea HOM05D002306 ORTHO05D005773 1.3e-147 526.9 406 63.5
Sabra15G0009300 Salix brachista HOM05D002306 ORTHO05D005773 1.3e-147 526.9 478 58.6
Sp6g15210 Schrenkiella parvula HOM05D002306 ORTHO05D005773 2.2e-147 526.2 405 64.2
Actinidia08661 Actinidia chinensis HOM05D002306 ORTHO05D005773 2.9e-147 525.8 392 66.3
Lj1g0011159 Lotus japonicus HOM05D002306 ORTHO05D005773 4.9e-147 525.0 380 69.2
BcaC01g06217 Brassica carinata HOM05D002306 ORTHO05D005773 8.4e-147 524.2 406 63.3
Ca_12784_v3 Cicer arietinum L. HOM05D002306 ORTHO05D005773 1.1e-146 523.9 383 67.6
Ca_12788_v3 Cicer arietinum L. HOM05D002306 ORTHO05D005773 1.1e-146 523.9 383 67.6
Medtr1g007860 Medicago truncatula HOM05D002306 ORTHO05D005773 5.5e-146 521.5 390 65.4
MBI06_g46366_MAGBIO Magnolia biondii HOM05D002306 ORTHO05D005773 9.3e-146 520.8 405 64.0
BcaC04g20512 Brassica carinata HOM05D002306 ORTHO05D005773 2.1e-145 519.6 406 63.1
A10p10540 Brassica napus HOM05D002306 ORTHO05D005773 2.1e-145 519.6 405 62.7
BolC9t57152H Brassica oleracea HOM05D002306 ORTHO05D005773 2.1e-145 519.6 406 63.1
Sp7g25780 Schrenkiella parvula HOM05D002306 ORTHO05D005773 2.1e-145 519.6 402 64.7
Cpa.g.sc3.100 Carica papaya HOM05D002306 ORTHO05D005773 2.7e-145 519.2 365 70.1
ECA232G4612 Erigeron canadensis HOM05D002306 ORTHO05D005773 7.9e-145 517.7 406 62.6
BraA10t43138Z Brassica rapa HOM05D002306 ORTHO05D005773 2.3e-144 516.2 405 62.5
BcaB08g35665 Brassica carinata HOM05D002306 ORTHO05D005773 3.0e-144 515.8 405 62.7
SGA_v2.0_scaffold44G16812 Striga asiatica HOM05D002306 ORTHO05D005773 3.0e-144 515.8 427 61.8
arahy.Tifrunner.gnm1.ann1.FPLI9C Arachis hypogaea HOM05D002306 ORTHO05D005773 1.5e-143 513.5 383 67.6
Actinidia34230 Actinidia chinensis HOM05D002306 ORTHO05D005773 9.6e-143 510.8 343 72.0
Hma1.2p1_1587F.1_g292250 Hydrangea macrophylla HOM05D002306 ORTHO05D005773 2.1e-142 509.6 347 72.3
arahy.Tifrunner.gnm1.ann1.4T5RFS Arachis hypogaea HOM05D002306 ORTHO05D005773 4.8e-142 508.4 383 67.1
Atru.chr12.2238 Acer truncatum HOM05D002306 ORTHO05D005773 2.4e-141 506.1 348 71.3
Lsat_1_v5_gn_9_49801 Lactuca sativa HOM05D002306 ORTHO05D005773 2.4e-141 506.1 406 61.3
PGR042G0827 Punica granatum HOM05D002306 ORTHO05D005773 9.0e-141 504.2 338 72.2
C09p42760 Brassica napus HOM05D002306 ORTHO05D005773 1.5e-140 503.4 434 58.8
Hund21009 Selenicereus undatus HOM05D002306 ORTHO05D005773 2.0e-140 503.1 337 72.7
Sc13g0009860 Simmondsia chinensis HOM05D002306 ORTHO05D005773 6.5e-139 498.0 338 72.2
HanXRQChr15g0485691 Helianthus annuus HOM05D002306 ORTHO05D005773 1.9e-138 496.5 406 61.3
AUR62019412 Chenopodium quinoa HOM05D002306 ORTHO05D005773 4.6e-137 491.9 342 70.8
Oeu060994.1 Olea europaea HOM05D002306 ORTHO05D005773 6.0e-137 491.5 410 62.7
HanXRQChr04g0100471 Helianthus annuus HOM05D002306 ORTHO05D005773 1.3e-136 490.3 401 58.9
CDE04G0267 Ceratophyllum demersum HOM05D002306 ORTHO05D005773 1.8e-136 490.0 393 61.6
Ah.13g070360 Amaranthus hybridus HOM05D002306 ORTHO05D005773 6.7e-136 488.0 335 70.1
AUR62006082 Chenopodium quinoa HOM05D002306 ORTHO05D005773 6.7e-136 488.0 344 70.6
Psat6g034960 Pisum sativum HOM05D002306 ORTHO05D005773 1.3e-134 483.8 325 72.3
Lsat_1_v5_gn_2_136261 Lactuca sativa HOM05D002306 ORTHO05D005773 8.2e-134 481.1 395 60.8
Actinidia08663 Actinidia chinensis HOM05D002306 ORTHO05D005773 4.1e-133 478.8 341 70.4
Sabra12G0015300 Salix brachista HOM05D002306 ORTHO05D005773 4.1e-133 478.8 401 62.8
Os05g0542200 Oryza sativa ssp. japonica HOM05D002306 ORTHO05D005773 7.6e-132 474.6 402 60.9
Zm00001eb294430 Zea mays HOM05D002306 ORTHO05D005773 5.0e-131 471.9 404 59.7
ATR0602G226 Amborella trichopoda HOM05D002306 ORTHO05D005773 7.2e-130 468.0 398 60.6
HPP92_010499 Vanilla planifolia HOM05D002306 ORTHO05D005773 1.1e-127 460.7 399 57.6
unitig_748.g7291 Utricularia gibba HOM05D002306 ORTHO05D005773 1.6e-121 440.3 340 63.8
Sed0009393 Sechium edule HOM05D002306 ORTHO05D005773 1.0e-120 437.6 313 68.1
Lj3C903G6 Lonicera japonica HOM05D002306 ORTHO05D005773 3.1e-117 426.0 292 69.2
Zm00001eb342430 Zea mays HOM05D002306 ORTHO05D005773 2.2e-115 419.9 386 56.7
Mapoly0155s0003 Marchantia polymorpha HOM05D002306 ORTHO05D005773 2.0e-100 370.2 362 51.1
AagrBONN_evm.TU.Sc2ySwM_228.3658 Anthoceros agrestis HOM05D002306 ORTHO05D005773 1.3e-91 340.9 319 52.7
Pp3c4_28770 Physcomitrium patens HOM05D002306 ORTHO05D005773 1.9e-90 337.0 315 50.8
CBR_g39074 Chara braunii HOM05D002306 ORTHO05D005773 2.8e-89 333.2 389 45.2
QL05p052295 Quercus lobata HOM05D002306 ORTHO05D005773 6.1e-89 332.0 220 71.8
COL.COLO4_16788 Corchorus olitorius HOM05D002306 ORTHO05D005773 6.8e-88 328.6 196 79.1
CBR_g52250 Chara braunii HOM05D002306 ORTHO05D005773 3.7e-86 322.8 330 50.0
SHI02360 Sapria himalayana HOM05D002306 ORTHO05D005773 7.8e-84 315.1 286 57.3
SMO147G0069 Selaginella moellendorffii HOM05D002306 ORTHO05D005773 1.7e-75 287.3 271 53.1
SGA_v2.0_scaffold192G40528 Striga asiatica HOM05D005626 ORTHO05D007032 6.2e-73 278.9 341 47.2
unitig_0.g2458 Utricularia gibba HOM05D000451 ORTHO05D000351 6.2e-73 278.9 282 53.9
MBI06_g36471_MAGBIO Magnolia biondii HOM05D002306 ORTHO05D005773 2.2e-70 270.4 243 58.0
Ciclev10023844m.g Citrus clementina HOM05D002306 ORTHO05D005773 1.1e-48 198.4 191 56.0
CDE03G0512 Ceratophyllum demersum HOM05D002306 ORTHO05D005773 1.5e-47 194.5 181 52.5
Cre11.g481250 Chlamydomonas reinhardtii HOM05D002306 ORTHO05D005773 4.4e-47 193.0 306 39.2
Lsat_1_v5_gn_7_80100 Lactuca sativa HOM05D002306 ORTHO05D005773 1.0e-43 181.8 135 60.7
Cre02.g077451 Chlamydomonas reinhardtii HOM05D002306 ORTHO05D005773 9.3e-37 158.7 318 33.0
Lj3C903G5 Lonicera japonica HOM05D002306 ORTHO05D005773 3.2e-29 133.7 109 59.6
PRCOL_00002303 Prasinoderma coloniale HOM05D002306 ORTHO05D005773 4.2e-29 133.3 337 30.0
COL.COLO4_16789 Corchorus olitorius HOM05D002476 ORTHO05D002652 2.3e-27 127.5 109 56.9
Actinidia03176 Actinidia chinensis HOM05D002306 ORTHO05D005773 3.7e-25 120.2 77 71.4
TPR.G40491 Trifolium pratense HOM05D002306 ORTHO05D005773 1.0e-22 112.1 61 85.2
CDE03G0170 Ceratophyllum demersum HOM05D002306 ORTHO05D005773 1.4e-21 108.2 89 62.9
SEGI_37240 Sequoiadendron giganteum HOM05D002306 ORTHO05D005773 2.5e-21 107.5 59 81.4
Lsat_1_v5_gn_5_184380 Lactuca sativa HOM05D000942 ORTHO05D014303 2.5e-18 97.4 61 70.5
SEGI_13792 Sequoiadendron giganteum HOM05D002306 ORTHO05D005773 2.5e-18 97.4 68 61.8
SEGI_09966 Sequoiadendron giganteum HOM05D002306 ORTHO05D005773 1.3e-17 95.1 127 43.3
Oeu053931.1 Olea europaea HOM05D002306 ORTHO05D005773 9.0e-16 89.0 68 61.8
TAR629G2756 Trochodendron aralioides HOM05D002306 ORTHO05D005773 8.5e-14 82.4 68 60.3
Medtr5g071310 Medicago truncatula HOM05D000009 ORTHO05D000008 1.1e-13 82.0 125 44.8
SEGI_03713 Sequoiadendron giganteum HOM05D002306 ORTHO05D036569 2.2e-09 67.8 50 58.0
Lsat_1_v5_gn_7_88240 Lactuca sativa HOM05D000942 ORTHO05D014303 6.9e-08 62.8 120 35.0
Medtr5g070490 Medicago truncatula HOM05D000009 ORTHO05D000008 1.5e-07 61.6 98 42.9
Thecc.01G026800 Theobroma cacao HOM05D000363 ORTHO05D000236 2.0e-07 61.2 335 24.5
Aqoxy2G02903 Aquilegia oxysepala HOM05D000363 ORTHO05D000236 7.7e-07 59.3 144 34.0
CiPaw.08G137800 Carya illinoinensis HOM05D000363 ORTHO05D000236 1.0e-06 58.9 140 33.6
Medtr5g070470 Medicago truncatula HOM05D000009 ORTHO05D000008 2.2e-06 57.8 121 40.5
Gorai.007G199500 Gossypium raimondii HOM05D000363 ORTHO05D000236 2.9e-06 57.4 76 42.1
Gohir.A11G181100 Gossypium hirsutum HOM05D000363 ORTHO05D000236 3.8e-06 57.0 76 42.1
CDE09G0813 Ceratophyllum demersum HOM05D000363 ORTHO05D005067 6.5e-06 56.2 141 31.2
CDE08G0389 Ceratophyllum demersum HOM05D000363 ORTHO05D000236 8.5e-06 55.8 76 39.5
PSO063G4478 Papaver somniferum HOM05D000363 ORTHO05D000236 8.5e-06 55.8 76 38.2


User provided reference genes

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