Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR142G2472 Punica granatum HOM05D004013 ORTHO05D004710 6.7e-268 926.8 469 100.0
Dinv28066 Davidia involucrata HOM05D004013 ORTHO05D004710 1.4e-169 600.1 446 68.2
Gohir.D12G001900 Gossypium hirsutum HOM05D004013 ORTHO05D004710 9.3e-169 597.4 455 66.6
Gorai.008G001300 Gossypium raimondii HOM05D004013 ORTHO05D004710 1.6e-168 596.7 448 66.7
COL.COLO4_06916 Corchorus olitorius HOM05D004013 ORTHO05D004710 1.3e-167 593.6 463 66.1
Duzib147G1378 Durio zibethinus HOM05D004013 ORTHO05D004710 1.8e-167 593.2 449 67.3
Atru.chr3.2025 Acer truncatum HOM05D004013 ORTHO05D004710 6.7e-167 591.3 443 66.8
Gohir.A12G002200 Gossypium hirsutum HOM05D004013 ORTHO05D004710 6.7e-167 591.3 456 66.4
Potri.007G147100 Populus trichocarpa HOM05D004013 ORTHO05D004710 1.1e-166 590.5 445 67.0
Prupe.2G000200 Prunus persica HOM05D004013 ORTHO05D004710 1.1e-166 590.5 455 66.6
Duzib264G0158 Durio zibethinus HOM05D004013 ORTHO05D004710 2.5e-166 589.3 455 65.5
Thecc.01G234100 Theobroma cacao HOM05D004013 ORTHO05D004710 2.8e-165 585.9 453 65.8
MD00G1055200 Malus domestica HOM05D004013 ORTHO05D004710 3.7e-165 585.5 455 65.9
Cfa000589 Carpinus fangiana HOM05D004013 ORTHO05D004710 6.2e-165 584.7 460 64.6
Eucgr.K03157 Eucalyptus grandis HOM05D004013 ORTHO05D004710 6.2e-165 584.7 455 67.5
CsaV3_2G011360 Cucumis sativus L. HOM05D004013 ORTHO05D004710 8.1e-165 584.3 445 66.7
MELO3C008520.2 Cucumis melo HOM05D004013 ORTHO05D004710 9.0e-164 580.9 444 66.7
MD07G1000400 Malus domestica HOM05D004013 ORTHO05D004710 1.3e-162 577.0 453 65.3
GSVIVG01003913001 Vitis vinifera HOM05D004013 ORTHO05D004710 2.2e-162 576.2 451 64.1
Potri.017G000500 Populus trichocarpa HOM05D004013 ORTHO05D004710 4.9e-162 575.1 445 64.7
CANSAT78G0639 Cannabis sativa HOM05D004013 ORTHO05D004710 6.4e-162 574.7 440 64.5
CiPaw.10G057600 Carya illinoinensis HOM05D004013 ORTHO05D004710 1.9e-161 573.2 418 67.9
QL05p046231 Quercus lobata HOM05D004013 ORTHO05D004710 3.2e-161 572.4 457 63.7
Ciclev10019906m.g Citrus clementina HOM05D004013 ORTHO05D004710 1.6e-160 570.1 445 64.5
Hma1.2p1_0940F.1_g239620 Hydrangea macrophylla HOM05D004013 ORTHO05D004710 1.8e-159 566.6 446 63.7
Lj1g0014615 Lotus japonicus HOM05D004013 ORTHO05D004710 1.8e-159 566.6 448 63.2
VMungo1383G0353 Vigna mungo HOM05D004013 ORTHO05D004710 3.9e-159 565.5 445 63.8
Phvul.008G048900 Phaseolus vulgaris HOM05D004013 ORTHO05D004710 1.3e-157 560.5 445 63.4
CSS0003826 Camellia sinensis var. sinensis HOM05D004013 ORTHO05D004710 2.1e-157 559.7 456 62.3
CSS0048139 Camellia sinensis var. sinensis HOM05D004013 ORTHO05D004710 2.1e-157 559.7 456 62.3
CiPaw.09G068100 Carya illinoinensis HOM05D004013 ORTHO05D004710 3.7e-157 558.9 402 68.4
Sed0016347 Sechium edule HOM05D004013 ORTHO05D004710 4.8e-157 558.5 453 63.6
TPR.G29111 Trifolium pratense HOM05D004013 ORTHO05D004710 1.4e-156 557.0 449 63.3
Medtr7g081230 Medicago truncatula HOM05D004013 ORTHO05D004710 3.1e-156 555.8 446 63.9
TAR633G1686 Trochodendron aralioides HOM05D004013 ORTHO05D004710 1.5e-155 553.5 458 62.7
Glyma.09G244800 Glycine max HOM05D004013 ORTHO05D004710 3.4e-155 552.4 446 62.6
Manes.01G009000 Manihot esculenta HOM05D004013 ORTHO05D004710 1.3e-154 550.4 403 68.5
Ca_08048_v3 Cicer arietinum L. HOM05D004013 ORTHO05D004710 1.7e-154 550.1 449 63.0
Ca_08054_v3 Cicer arietinum L. HOM05D004013 ORTHO05D004710 1.7e-154 550.1 449 63.0
TWI15G0551 Tripterygium wilfordii HOM05D004013 ORTHO05D004710 2.2e-154 549.7 453 61.1
Glyma.18G248400 Glycine max HOM05D004013 ORTHO05D004710 3.8e-154 548.9 445 62.5
ECA233G0032 Erigeron canadensis HOM05D004013 ORTHO05D004710 4.9e-154 548.5 449 62.4
Lalb_Chr01g0021691 Lupinus albus HOM05D004013 ORTHO05D004710 8.4e-154 547.7 446 62.3
Lsat_1_v5_gn_8_45601 Lactuca sativa HOM05D004013 ORTHO05D004710 1.9e-153 546.6 439 64.2
TWI63G0479 Tripterygium wilfordii HOM05D004013 ORTHO05D004710 5.5e-153 545.0 454 60.8
vmacro09116 Vaccinium macrocarpon HOM05D004013 ORTHO05D004710 7.1e-153 544.7 446 61.9
ECA232G0201 Erigeron canadensis HOM05D004013 ORTHO05D004710 2.1e-152 543.1 448 62.9
arahy.Tifrunner.gnm1.ann1.M4STP7 Arachis hypogaea HOM05D004013 ORTHO05D004710 2.7e-152 542.7 447 61.3
Lj3C865T7 Lonicera japonica HOM05D004013 ORTHO05D004710 7.9e-152 541.2 443 62.1
Psat0s3112g0040 Pisum sativum HOM05D004013 ORTHO05D004710 1.8e-151 540.0 421 63.7
arahy.Tifrunner.gnm1.ann1.LVD0DC Arachis hypogaea HOM05D004013 ORTHO05D004710 2.3e-151 539.7 446 61.4
TAR365G0341 Trochodendron aralioides HOM05D004013 ORTHO05D004710 3.0e-151 539.3 447 60.9
Cpa.g.sc9.235 Carica papaya HOM05D004013 ORTHO05D004710 3.9e-151 538.9 412 65.0
PSO732G0206 Papaver somniferum HOM05D004013 ORTHO05D004710 1.5e-150 537.0 457 60.2
PSO675G0050 Papaver somniferum HOM05D004013 ORTHO05D004710 5.7e-150 535.0 450 60.7
DCAR_023584 Daucus carota HOM05D004013 ORTHO05D004710 9.7e-150 534.3 449 60.6
CDE06G1594 Ceratophyllum demersum HOM05D004013 ORTHO05D004710 1.6e-149 533.5 448 60.9
arahy.Tifrunner.gnm1.ann1.ERJ0Z2 Arachis hypogaea HOM05D004013 ORTHO05D004710 2.8e-149 532.7 457 60.2
CDE04G0030 Ceratophyllum demersum HOM05D004013 ORTHO05D004710 1.8e-148 530.0 446 61.0
Aa31LG1G25800 Aethionema arabicum HOM05D004013 ORTHO05D004710 3.1e-148 529.3 446 59.9
Migut.L00278 Erythranthe guttata HOM05D004013 ORTHO05D004710 6.9e-148 528.1 432 61.8
Sp4g26220 Schrenkiella parvula HOM05D004013 ORTHO05D004710 6.9e-148 528.1 446 60.3
AL4G43020 Arabidopsis lyrata HOM05D004013 ORTHO05D004710 1.0e-146 524.2 446 59.4
ATR0706G248 Amborella trichopoda HOM05D004013 ORTHO05D004710 8.5e-146 521.2 451 58.1
Lj6A740G51 Lonicera japonica HOM05D004013 ORTHO05D004710 8.5e-146 521.2 449 61.5
HanXRQChr12g0363401 Helianthus annuus HOM05D004013 ORTHO05D004710 1.1e-145 520.8 398 66.3
HanXRQChr08g0212421 Helianthus annuus HOM05D004013 ORTHO05D004710 2.5e-145 519.6 404 65.6
Hund22667 Selenicereus undatus HOM05D004013 ORTHO05D004710 7.2e-145 518.1 457 58.9
Lalb_Chr03g0040611 Lupinus albus HOM05D004013 ORTHO05D004710 2.1e-144 516.5 447 59.5
Nn1g09391 Nelumbo nucifera HOM05D004013 ORTHO05D004710 2.1e-144 516.5 394 64.2
AT2G44140 Arabidopsis thaliana HOM05D004013 ORTHO05D004710 3.6e-144 515.8 445 58.4
Migut.L00578 Erythranthe guttata HOM05D004013 ORTHO05D004710 4.6e-144 515.4 411 63.0
BcaC02g12335 Brassica carinata HOM05D004013 ORTHO05D004710 7.9e-144 514.6 443 59.1
C04p05030 Brassica napus HOM05D004013 ORTHO05D004710 7.9e-144 514.6 443 59.1
BolC4t22136H Brassica oleracea HOM05D004013 ORTHO05D004710 7.9e-144 514.6 443 59.1
MBI15_g08971_MAGBIO Magnolia biondii HOM05D004013 ORTHO05D004710 1.4e-143 513.8 416 63.2
PGSC0003DMG400032144 Solanum tuberosum HOM05D004013 ORTHO05D004710 3.9e-143 512.3 483 55.7
Oeu011024.1 Olea europaea HOM05D004013 ORTHO05D004710 8.8e-143 511.1 398 63.8
MSTRG.23493 Avicennia marina HOM05D004013 ORTHO05D004710 5.7e-142 508.4 431 60.8
FvH4_2g06800 Fragaria vesca HOM05D004013 ORTHO05D004710 7.4e-142 508.1 423 62.4
Rhsim09G0091900 Rhododendron simsii HOM05D004013 ORTHO05D004710 7.4e-142 508.1 517 53.8
Nitab4.5_0001568g0070 Nicotiana tabacum HOM05D004013 ORTHO05D004710 1.7e-141 506.9 408 62.0
SalBow7G0073 Salvia bowleyana HOM05D004013 ORTHO05D004710 2.2e-141 506.5 510 54.5
BcaB02g08917 Brassica carinata HOM05D004013 ORTHO05D004710 3.7e-141 505.8 445 58.0
Sp5g03230 Schrenkiella parvula HOM05D004013 ORTHO05D004710 3.7e-141 505.8 443 58.2
Sopen01g002230 Solanum pennellii HOM05D004013 ORTHO05D004710 3.7e-141 505.8 480 56.0
arahy.Tifrunner.gnm1.ann1.AL59ZJ Arachis hypogaea HOM05D004013 ORTHO05D004710 8.2e-141 504.6 447 58.6
Solyc01g006230.3 Solanum lycopersicum HOM05D004013 ORTHO05D004710 8.2e-141 504.6 480 55.8
FAN20G2928 Fragaria x ananassa HOM05D004013 ORTHO05D004710 1.1e-140 504.2 421 62.2
Nitab4.5_0005132g0050 Nicotiana tabacum HOM05D004013 ORTHO05D004710 1.1e-140 504.2 408 62.3
SHI01175 Sapria himalayana HOM05D004013 ORTHO05D004710 1.1e-140 504.2 447 58.4
FAN24G3388 Fragaria x ananassa HOM05D004013 ORTHO05D004710 1.8e-140 503.4 421 61.5
Os04g0682000 Oryza sativa ssp. japonica HOM05D004013 ORTHO05D004710 3.1e-140 502.7 445 56.9
A05p04250 Brassica napus HOM05D004013 ORTHO05D004710 5.3e-140 501.9 447 57.9
BraA05t19410Z Brassica rapa HOM05D004013 ORTHO05D004710 6.9e-140 501.5 447 57.9
CAN.G140.48 Capsicum annuum HOM05D004013 ORTHO05D004710 6.9e-140 501.5 482 55.6
AUR62002510 Chenopodium quinoa HOM05D004013 ORTHO05D004710 6.9e-140 501.5 463 56.6
RcHm_v2.0_Chr6g0259021 Rosa chinensis HOM05D004013 ORTHO05D004710 6.9e-140 501.5 422 62.6
CARHR139300 Cardamine hirsuta HOM05D004013 ORTHO05D004710 9.1e-140 501.1 435 58.9
CSS0004368 Camellia sinensis var. sinensis HOM05D004013 ORTHO05D004710 2.0e-139 500.0 428 61.0
Carub.0004s2669 Capsella rubella HOM05D004013 ORTHO05D004710 2.0e-139 500.0 404 62.1
FAN27G1923 Fragaria x ananassa HOM05D004013 ORTHO05D004710 2.6e-139 499.6 409 62.8
Ah.07g203370 Amaranthus hybridus HOM05D004013 ORTHO05D004710 4.5e-139 498.8 424 59.7
Os03g0391000 Oryza sativa ssp. japonica HOM05D004013 ORTHO05D004710 7.7e-139 498.0 444 58.1
FAN15G0687 Fragaria x ananassa HOM05D004013 ORTHO05D004710 1.0e-138 497.7 407 63.1
CARHR170260 Cardamine hirsuta HOM05D004013 ORTHO05D004710 1.3e-138 497.3 405 60.2
SGA_v2.0_scaffold37G14795 Striga asiatica HOM05D004013 ORTHO05D004710 1.1e-137 494.2 410 60.5
AL5G42130 Arabidopsis lyrata HOM05D004013 ORTHO05D004710 1.9e-137 493.4 445 56.9
Carub.0005s2667 Capsella rubella HOM05D004013 ORTHO05D004710 9.4e-137 491.1 401 60.1
AUR62023683 Chenopodium quinoa HOM05D004013 ORTHO05D004710 1.6e-136 490.3 405 61.0
AT3G59950 Arabidopsis thaliana HOM05D004013 ORTHO05D004710 2.1e-136 490.0 415 58.3
Zm00001eb065800 Zea mays HOM05D004013 ORTHO05D004710 1.8e-135 486.9 451 57.0
Haze_06261 Corylus avellana HOM05D004013 ORTHO05D004710 3.0e-135 486.1 700 42.3
BraA09t40658Z Brassica rapa HOM05D004013 ORTHO05D004710 8.8e-135 484.6 409 57.9
BraA04t15923Z Brassica rapa HOM05D004013 ORTHO05D004710 1.1e-134 484.2 397 58.2
Thhalv10005940m.g Eutrema salsugineum HOM05D004013 ORTHO05D004710 1.1e-134 484.2 404 59.4
HPP92_020809 Vanilla planifolia HOM05D004013 ORTHO05D004710 1.5e-134 483.8 448 56.2
BcaC07g40539 Brassica carinata HOM05D004013 ORTHO05D004710 2.6e-134 483.0 397 58.9
SGA_v2.0_scaffold3G01797 Striga asiatica HOM05D004013 ORTHO05D004710 4.4e-134 482.3 471 55.4
BcaB02g08204 Brassica carinata HOM05D004013 ORTHO05D004710 5.7e-134 481.9 404 58.7
EL10Ac3g06192 Beta vulgaris HOM05D004013 ORTHO05D004710 7.4e-134 481.5 486 53.1
BcaC02g10096 Brassica carinata HOM05D004013 ORTHO05D004710 7.4e-134 481.5 404 58.4
BolC4t24846H Brassica oleracea HOM05D004013 ORTHO05D004710 7.4e-134 481.5 404 58.4
C04p32840 Brassica napus HOM05D004013 ORTHO05D004710 9.7e-134 481.1 404 58.2
A04p01980 Brassica napus HOM05D004013 ORTHO05D004710 6.3e-133 478.4 399 57.9
Thhalv10001432m.g Eutrema salsugineum HOM05D004013 ORTHO05D004710 2.4e-132 476.5 397 59.2
BcaC07g40400 Brassica carinata HOM05D004013 ORTHO05D004710 2.6e-131 473.0 397 58.4
unitig_748.g8760 Utricularia gibba HOM05D004013 ORTHO05D004710 4.5e-131 472.2 419 56.3
BolC8t51099H Brassica oleracea HOM05D004013 ORTHO05D004710 5.9e-131 471.9 402 57.5
A09p52290 Brassica napus HOM05D004013 ORTHO05D004710 1.3e-130 470.7 434 54.6
DCAR_026793 Daucus carota HOM05D004013 ORTHO05D004710 6.5e-130 468.4 403 59.8
Zm00001eb433950 Zea mays HOM05D004013 ORTHO05D004710 3.2e-129 466.1 363 63.1
vmacro10687 Vaccinium macrocarpon HOM05D004013 ORTHO05D004710 4.2e-129 465.7 517 50.1
Ah.13g073110 Amaranthus hybridus HOM05D004013 ORTHO05D004710 1.2e-128 464.2 391 58.8
SEGI_37986 Sequoiadendron giganteum HOM05D004013 ORTHO05D004710 3.0e-127 459.5 452 54.2
Dinv18636 Davidia involucrata HOM05D004013 ORTHO05D004710 1.5e-126 457.2 318 71.7
Oeu034368.2 Olea europaea HOM05D004013 ORTHO05D004710 7.4e-126 454.9 582 46.2
ClCG06G010000 Citrullus lanatus HOM05D004013 ORTHO05D004710 6.3e-125 451.8 329 67.8
Pp3c11_22820 Physcomitrium patens HOM05D004013 ORTHO05D004710 1.8e-124 450.3 398 55.0
Sed0011939 Sechium edule HOM05D004013 ORTHO05D004710 1.6e-123 447.2 329 66.9
Pp3c7_280 Physcomitrium patens HOM05D004013 ORTHO05D004710 1.6e-120 437.2 398 53.3
Peaxi162Scf00441g00621 Petunia axillaris HOM05D004013 ORTHO05D004710 2.2e-117 426.8 404 55.7
Mapoly0153s0038 Marchantia polymorpha HOM05D004013 ORTHO05D004710 3.1e-116 422.9 399 53.4
Sc08g0007990 Simmondsia chinensis HOM05D004013 ORTHO05D004710 3.8e-114 416.0 333 60.4
THA.LOC104808419 Tarenaya hassleriana HOM05D004013 ORTHO05D004710 2.8e-109 399.8 300 63.0
SMO145G0104 Selaginella moellendorffii HOM05D004013 ORTHO05D004710 4.1e-108 396.0 377 54.1
Oeu053147.1 Olea europaea HOM05D004013 ORTHO05D004710 4.1e-84 316.2 267 60.3
Zm00001eb419970 Zea mays HOM05D004013 ORTHO05D004710 1.7e-77 294.3 236 60.2
Actinidia29462 Actinidia chinensis HOM05D004013 ORTHO05D004710 2.4e-76 290.4 223 62.8
Sabra17G0005400 Salix brachista HOM05D004013 ORTHO05D004710 1.2e-72 278.1 227 61.7
C08p34940 Brassica napus HOM05D004013 ORTHO05D004710 4.4e-70 269.6 217 58.1
CBR_g21952 Chara braunii HOM05D004013 ORTHO05D004710 4.6e-67 259.6 312 44.2
Hma1.2p1_1910F.1_g307280 Hydrangea macrophylla HOM05D004013 ORTHO05D004710 5.6e-65 252.7 238 56.3
Zm00001eb264230 Zea mays HOM05D004013 ORTHO05D004710 7.3e-65 252.3 261 51.3
Actinidia29461 Actinidia chinensis HOM05D004013 ORTHO05D004710 9.6e-65 251.9 202 60.9
PRCOL_00001711 Prasinoderma coloniale HOM05D004013 ORTHO05D004710 7.3e-57 225.7 478 33.3
Actinidia36638 Actinidia chinensis HOM05D004013 ORTHO05D004710 4.0e-47 193.4 411 37.0
Oeu037862.1 Olea europaea HOM05D004013 ORTHO05D004710 4.5e-46 189.9 297 39.1
unitig_32.g11897 Utricularia gibba HOM05D004013 ORTHO05D004710 8.7e-42 175.6 267 41.2
C08p34950 Brassica napus HOM05D004013 ORTHO05D004710 5.1e-34 149.8 122 59.0
MCO13G568 Micromonas commoda HOM05D004013 ORTHO05D004710 6.7e-34 149.4 287 33.1
THA.LOC104804900 Tarenaya hassleriana HOM05D004013 ORTHO05D004710 3.3e-33 147.1 178 47.2
Cre12.g510100 Chlamydomonas reinhardtii HOM05D004013 ORTHO05D004710 4.2e-28 130.2 637 24.3
ClCG06G009970 Citrullus lanatus HOM05D004013 ORTHO05D004710 4.2e-28 130.2 99 65.7
Actinidia03474 Actinidia chinensis HOM05D004013 ORTHO05D004710 2.8e-24 117.5 105 55.2
Peaxi162Scf00271g00518 Petunia axillaris HOM05D004013 ORTHO05D004710 3.1e-23 114.0 115 53.0
arahy.Tifrunner.gnm1.ann1.MVA4LE Arachis hypogaea HOM05D004013 ORTHO05D004710 1.3e-21 108.6 127 52.0
arahy.Tifrunner.gnm1.ann1.AC7664 Arachis hypogaea HOM05D004013 ORTHO05D004710 1.1e-15 89.0 108 50.0
Cfa022146 Carpinus fangiana HOM05D004013 ORTHO05D124891 5.5e-12 76.6 347 25.4
Actinidia03477 Actinidia chinensis HOM05D004013 ORTHO05D004710 7.2e-12 76.3 87 44.8
ATR0807G232 Amborella trichopoda HOM05D004013 ORTHO05D004710 3.0e-10 70.9 44 68.2
ATR0807G053 Amborella trichopoda HOM05D004013 ORTHO05D004710 3.5e-06 57.4 43 55.8


User provided reference genes

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