Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR142G2334 Punica granatum HOM05D007456 ORTHO05D009411 5.0e-110 402.5 537 100.0
Lj1C1032G4 Lonicera japonica HOM05D007456 ORTHO05D009411 4.5e-18 97.1 58 74.1
Cc11_g03880 Coffea canephora HOM05D007456 ORTHO05D009411 1.0e-14 85.9 52 73.1
TAR375G0715 Trochodendron aralioides HOM05D007456 ORTHO05D009411 4.0e-14 84.0 76 57.9
TAR375G0927 Trochodendron aralioides HOM05D007456 ORTHO05D009411 4.0e-14 84.0 76 57.9
BcaB06g27033 Brassica carinata HOM05D007456 ORTHO05D009411 1.5e-13 82.0 64 62.5
Glyma.11G013600 Glycine max HOM05D007456 ORTHO05D009411 2.0e-13 81.6 64 62.5
FvH4_7g33530 Fragaria vesca HOM05D007456 ORTHO05D009411 2.6e-13 81.3 64 60.9
Gohir.D04G076800 Gossypium hirsutum HOM05D007456 ORTHO05D009411 3.3e-13 80.9 64 59.4
Nn1g09307 Nelumbo nucifera HOM05D007456 ORTHO05D009411 3.3e-13 80.9 64 59.4
AL7G45310 Arabidopsis lyrata HOM05D007456 ORTHO05D009411 4.4e-13 80.5 64 60.9
Glyma.01G230600 Glycine max HOM05D007456 ORTHO05D009411 4.4e-13 80.5 65 60.0
GSVIVG01024456001 Vitis vinifera HOM05D007456 ORTHO05D009411 4.4e-13 80.5 67 59.7
Gohir.A05G338400 Gossypium hirsutum HOM05D007456 ORTHO05D009411 9.7e-13 79.3 64 57.8
Gorai.012G086600 Gossypium raimondii HOM05D007456 ORTHO05D009411 9.7e-13 79.3 64 57.8
Thhalv10004016m.g Eutrema salsugineum HOM05D007456 ORTHO05D009411 1.7e-12 78.6 64 60.9
THA.LOC104823813 Tarenaya hassleriana HOM05D007456 ORTHO05D009411 1.7e-12 78.6 64 59.4
HPP92_008353 Vanilla planifolia HOM05D006705 ORTHO05D008179 1.7e-12 78.6 53 64.2
CDE02G0006 Ceratophyllum demersum HOM05D007456 ORTHO05D009411 2.8e-12 77.8 56 62.5
RcHm_v2.0_Chr1g0383591 Rosa chinensis HOM05D007456 ORTHO05D009411 3.7e-12 77.4 63 58.7
Sp7g05790 Schrenkiella parvula HOM05D007456 ORTHO05D009411 4.8e-12 77.0 64 59.4
CAN.G128.20 Capsicum annuum HOM05D007456 ORTHO05D009411 6.3e-12 76.6 64 59.4
QL09p026466 Quercus lobata HOM05D007456 ORTHO05D009411 6.3e-12 76.6 60 63.3
QL09p026540 Quercus lobata HOM05D007456 ORTHO05D009411 6.3e-12 76.6 60 63.3
A04p10240 Brassica napus HOM05D007456 ORTHO05D009411 8.2e-12 76.3 64 60.9
BraA04t16690Z Brassica rapa HOM05D007456 ORTHO05D009411 8.2e-12 76.3 64 60.9
AUR62036875 Chenopodium quinoa HOM05D006705 ORTHO05D008179 8.2e-12 76.3 53 64.2
PGSC0003DMG400023682 Solanum tuberosum HOM05D007456 ORTHO05D009411 8.2e-12 76.3 65 60.0
Aqoxy3G00913 Aquilegia oxysepala HOM05D007456 ORTHO05D009411 1.1e-11 75.9 67 56.7
MSTRG.26940 Avicennia marina HOM05D007456 ORTHO05D009411 1.4e-11 75.5 64 56.2
Peaxi162Scf00398g00211 Petunia axillaris HOM05D007456 ORTHO05D009411 1.4e-11 75.5 64 60.9
VMungo1309G2580 Vigna mungo HOM05D006705 ORTHO05D008179 1.4e-11 75.5 53 64.2
FvH4_7g33490 Fragaria vesca HOM05D007456 ORTHO05D009411 1.8e-11 75.1 64 59.4
Lsat_1_v5_gn_4_134121 Lactuca sativa HOM05D007456 ORTHO05D009411 1.8e-11 75.1 60 56.7
Lj9A258G53 Lonicera japonica HOM05D007456 ORTHO05D009411 1.8e-11 75.1 80 53.8
Sopen10g030890 Solanum pennellii HOM05D007456 ORTHO05D009411 1.8e-11 75.1 64 60.9
Thecc.05G207800 Theobroma cacao HOM05D007456 ORTHO05D009411 1.8e-11 75.1 64 56.2
CsaV3_4G004450 Cucumis sativus L. HOM05D007456 ORTHO05D009411 2.4e-11 74.7 65 55.4
Oeu055445.1 Olea europaea HOM05D007456 ORTHO05D009411 2.4e-11 74.7 63 57.1
FAN10G0306 Fragaria x ananassa HOM05D007456 ORTHO05D009411 3.1e-11 74.3 73 54.8
FAN10G3274 Fragaria x ananassa HOM05D007456 ORTHO05D009411 3.1e-11 74.3 73 54.8
Cpa.g.sc252.22 Carica papaya HOM05D007456 ORTHO05D009411 4.1e-11 73.9 69 53.6
Sed0026452 Sechium edule HOM05D007456 ORTHO05D009411 4.1e-11 73.9 67 55.2
Eucgr.F03554 Eucalyptus grandis HOM05D006705 ORTHO05D008179 5.3e-11 73.6 53 62.3
Actinidia08731 Actinidia chinensis HOM05D007456 ORTHO05D009411 7.0e-11 73.2 66 54.5
Gohir.D06G036701 Gossypium hirsutum HOM05D006705 ORTHO05D008179 7.0e-11 73.2 53 64.2
Gorai.010G041000 Gossypium raimondii HOM05D006705 ORTHO05D008179 7.0e-11 73.2 53 64.2
MD15G1002100 Malus domestica HOM05D006705 ORTHO05D008179 7.0e-11 73.2 53 64.2
BolC4t25953H Brassica oleracea HOM05D007456 ORTHO05D009411 9.1e-11 72.8 107 45.8
Nitab4.5_0002710g0130 Nicotiana tabacum HOM05D006705 ORTHO05D008179 1.2e-10 72.4 51 66.7
Nitab4.5_0016432g0010 Nicotiana tabacum HOM05D007456 ORTHO05D009411 2.0e-10 71.6 63 58.7
BcaC02g09523 Brassica carinata HOM05D007456 ORTHO05D009411 2.7e-10 71.2 107 45.8
Dinv11972 Davidia involucrata HOM05D007456 ORTHO05D009411 2.7e-10 71.2 60 58.3
SGA_v2.0_scaffold108G30860 Striga asiatica HOM05D006705 ORTHO05D008179 2.7e-10 71.2 50 64.0
CDE02G4098 Ceratophyllum demersum HOM05D006705 ORTHO05D008179 3.5e-10 70.9 52 61.5
CSS0004504 Camellia sinensis var. sinensis HOM05D006705 ORTHO05D008179 4.5e-10 70.5 51 62.7
CSS0019684 Camellia sinensis var. sinensis HOM05D006705 ORTHO05D008179 4.5e-10 70.5 51 62.7
Nitab4.5_0004532g0030 Nicotiana tabacum HOM05D007456 ORTHO05D009411 4.5e-10 70.5 63 57.1
AUR62018885 Chenopodium quinoa HOM05D007456 ORTHO05D009411 5.9e-10 70.1 64 51.6
ClCG07G017250 Citrullus lanatus HOM05D007456 ORTHO05D009411 5.9e-10 70.1 65 52.3
Hma1.2p1_0758F.1_g213530 Hydrangea macrophylla HOM05D007456 ORTHO05D009411 5.9e-10 70.1 58 62.1
C04p43710 Brassica napus HOM05D007456 ORTHO05D009411 1.0e-09 69.3 107 44.9
vmacro06487 Vaccinium macrocarpon HOM05D007456 ORTHO05D009411 1.0e-09 69.3 79 49.4
Ah.07g203680 Amaranthus hybridus HOM05D007456 ORTHO05D009411 1.3e-09 68.9 64 53.1
SGA_v2.0_scaffold44G16881 Striga asiatica HOM05D007456 ORTHO05D009411 2.9e-09 67.8 60 53.3
HanXRQChr09g0260511 Helianthus annuus HOM05D007456 ORTHO05D009411 5.0e-09 67.0 71 56.3
AUR62005926 Chenopodium quinoa HOM05D007456 ORTHO05D009411 6.5e-09 66.6 78 44.9
Gohir.D05G336850 Gossypium hirsutum HOM05D006705 ORTHO05D008179 6.5e-09 66.6 61 55.7
CiPaw.06G020600 Carya illinoinensis HOM05D007456 ORTHO05D009411 8.5e-09 66.2 56 60.7
Rhsim01G0125300 Rhododendron simsii HOM05D007456 ORTHO05D009411 8.5e-09 66.2 70 50.0
vmacro21812 Vaccinium macrocarpon HOM05D006705 ORTHO05D008179 8.5e-09 66.2 49 57.1
ATR0661G389 Amborella trichopoda HOM05D006705 ORTHO05D008179 1.1e-08 65.9 47 63.8
MD12G1003200 Malus domestica HOM05D006705 ORTHO05D008179 1.1e-08 65.9 50 62.0
FAN03G3193 Fragaria x ananassa HOM05D007456 ORTHO05D009411 1.5e-08 65.5 151 36.4
MBI13_g23885_MAGBIO Magnolia biondii HOM05D007456 ORTHO05D009411 1.9e-08 65.1 66 47.0
Nitab4.5_0000337g0230 Nicotiana tabacum HOM05D006705 ORTHO05D008179 1.9e-08 65.1 47 63.8
MBI08_g41522_MAGBIO Magnolia biondii HOM05D006705 ORTHO05D008179 4.2e-08 63.9 47 61.7
Thecc.08G058800 Theobroma cacao HOM05D006705 ORTHO05D008179 5.5e-08 63.5 48 60.4
EL10Ac3g05110 Beta vulgaris HOM05D007456 ORTHO05D009411 7.2e-08 63.2 78 42.3
CDE04G2934 Ceratophyllum demersum HOM05D006705 ORTHO05D008179 7.2e-08 63.2 48 58.3
Hund05113 Selenicereus undatus HOM05D006705 ORTHO05D008179 9.4e-08 62.8 63 49.2
Actinidia15490 Actinidia chinensis HOM05D006705 ORTHO05D008179 1.2e-07 62.4 48 58.3
Prupe.1G354600 Prunus persica HOM05D006705 ORTHO05D008179 1.6e-07 62.0 49 59.2
Peaxi162Scf00400g00113 Petunia axillaris HOM05D006705 ORTHO05D008179 2.1e-07 61.6 46 60.9
Sc19g0000290 Simmondsia chinensis HOM05D007456 ORTHO05D009411 2.1e-07 61.6 71 47.9
ECA232G0132 Erigeron canadensis HOM05D006705 ORTHO05D008179 2.7e-07 61.2 47 59.6
Solyc08g045850.3 Solanum lycopersicum HOM05D006705 ORTHO05D008179 2.7e-07 61.2 47 57.4
Sopen08g014170 Solanum pennellii HOM05D006705 ORTHO05D008179 2.7e-07 61.2 47 57.4
PGSC0003DMG400011663 Solanum tuberosum HOM05D006705 ORTHO05D008179 2.7e-07 61.2 48 56.2
RcHm_v2.0_Chr1g0383651 Rosa chinensis HOM05D007456 ORTHO05D009411 6.1e-07 60.1 52 53.8
Potri.002G010900 Populus trichocarpa HOM05D006705 ORTHO05D008179 8.0e-07 59.7 45 60.0
TAR376G0550 Trochodendron aralioides HOM05D006705 ORTHO05D008179 8.0e-07 59.7 43 62.8
CDE02G0352 Ceratophyllum demersum HOM05D007456 ORTHO05D009411 1.0e-06 59.3 53 54.7
Rhsim06G0007500 Rhododendron simsii HOM05D006705 ORTHO05D008179 1.0e-06 59.3 44 59.1
Cpa.g.sc26.199 Carica papaya HOM05D006705 ORTHO05D008179 1.4e-06 58.9 44 59.1
COL.COLO4_06661 Corchorus olitorius HOM05D006705 ORTHO05D008179 1.4e-06 58.9 44 61.4
CsaV3_6G031600 Cucumis sativus L. HOM05D006705 ORTHO05D008179 1.4e-06 58.9 46 58.7
Potri.005G250200 Populus trichocarpa HOM05D006705 ORTHO05D008179 1.4e-06 58.9 43 60.5
Cfa014075 Carpinus fangiana HOM05D006705 ORTHO05D008179 1.8e-06 58.5 47 57.4
CiPaw.08G072900 Carya illinoinensis HOM05D006705 ORTHO05D008179 2.3e-06 58.2 44 59.1
Manes.05G134500 Manihot esculenta HOM05D006705 ORTHO05D008179 2.3e-06 58.2 44 59.1
Sabra02G0008200 Salix brachista HOM05D006705 ORTHO05D008179 2.3e-06 58.2 40 62.5
Manes.08G164911 Manihot esculenta HOM05D007456 ORTHO05D009411 3.0e-06 57.8 50 58.0
Atru.chr13.134 Acer truncatum HOM05D006705 ORTHO05D008179 4.0e-06 57.4 43 60.5
ClCG08G009460 Citrullus lanatus HOM05D006705 ORTHO05D008179 5.2e-06 57.0 45 57.8
MELO3C026541.2 Cucumis melo HOM05D006705 ORTHO05D008179 5.2e-06 57.0 45 57.8
Phvul.009G010700 Phaseolus vulgaris HOM05D006705 ORTHO05D008179 5.2e-06 57.0 42 59.5
SalBow4G3145 Salvia bowleyana HOM05D007456 ORTHO05D009411 5.2e-06 57.0 51 51.0
EL10Ac1g01967 Beta vulgaris HOM05D006705 ORTHO05D008179 8.8e-06 56.2 43 55.8


User provided reference genes

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