Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR142G2067 Punica granatum HOM05D005442 ORTHO05D006450 8.9e-257 889.8 459 100.0
Eucgr.I01451 Eucalyptus grandis HOM05D005442 ORTHO05D006450 7.1e-81 305.4 459 45.3
Dinv41924 Davidia involucrata HOM05D005442 ORTHO05D006450 1.6e-77 294.3 518 41.1
Actinidia39159 Actinidia chinensis HOM05D005442 ORTHO05D006450 3.4e-75 286.6 481 42.0
CSS0044298 Camellia sinensis var. sinensis HOM05D005442 ORTHO05D006450 3.4e-75 286.6 484 43.2
TWI31G1375 Tripterygium wilfordii HOM05D005442 ORTHO05D006450 2.2e-74 283.9 497 43.5
TAR376G0424 Trochodendron aralioides HOM05D005442 ORTHO05D006450 4.2e-73 279.6 380 47.6
GSVIVG01023996001 Vitis vinifera HOM05D005442 ORTHO05D006450 2.1e-72 277.3 527 39.1
vmacro17319 Vaccinium macrocarpon HOM05D005442 ORTHO05D006450 1.5e-70 271.2 465 41.9
Ciclev10028168m.g Citrus clementina HOM05D005442 ORTHO05D006450 7.4e-70 268.9 505 39.6
Actinidia21468 Actinidia chinensis HOM05D005442 ORTHO05D006450 9.7e-70 268.5 487 40.7
TAR369G0572 Trochodendron aralioides HOM05D005442 ORTHO05D006450 3.7e-69 266.5 382 46.6
Thecc.02G056900 Theobroma cacao HOM05D005442 ORTHO05D006450 8.2e-69 265.4 507 39.4
Sed0001500 Sechium edule HOM05D005442 ORTHO05D006450 3.8e-66 256.5 492 40.0
CiPaw.05G084400 Carya illinoinensis HOM05D005442 ORTHO05D006450 1.4e-65 254.6 506 39.7
ClCG02G012030 Citrullus lanatus HOM05D005442 ORTHO05D006450 2.1e-64 250.8 478 40.8
Sc08g0002780 Simmondsia chinensis HOM05D005442 ORTHO05D006450 3.0e-63 246.9 433 43.4
Hund06446 Selenicereus undatus HOM05D005442 ORTHO05D006450 3.9e-63 246.5 505 35.6
QL11p051413 Quercus lobata HOM05D005442 ORTHO05D006450 1.1e-62 245.0 521 39.2
Atru.chr5.3384 Acer truncatum HOM05D005442 ORTHO05D006450 3.3e-62 243.4 315 46.0
Cpa.g.sc20.103 Carica papaya HOM05D005442 ORTHO05D006450 7.4e-62 242.3 504 39.3
Lsat_1_v5_gn_6_13820 Lactuca sativa HOM05D005442 ORTHO05D006450 2.8e-61 240.4 428 41.4
Nn1g06499 Nelumbo nucifera HOM05D005442 ORTHO05D006450 8.2e-61 238.8 306 49.0
Peaxi162Scf00362g00530 Petunia axillaris HOM05D005442 ORTHO05D006450 3.1e-60 236.9 491 37.5
Haze_13370 Corylus avellana HOM05D005442 ORTHO05D006450 2.0e-59 234.2 431 39.7
Sabra09G0106500 Salix brachista HOM05D005442 ORTHO05D006450 2.6e-59 233.8 514 37.0
Solyc01g111720.4 Solanum lycopersicum HOM05D005442 ORTHO05D006450 5.0e-58 229.6 487 37.0
Sopen01g053760 Solanum pennellii HOM05D005442 ORTHO05D006450 5.0e-58 229.6 486 36.6
MELO3C020828.2 Cucumis melo HOM05D005442 ORTHO05D006450 8.5e-58 228.8 407 39.3
Manes.01G140900 Manihot esculenta HOM05D005442 ORTHO05D006450 2.1e-56 224.2 485 37.5
CDE04G0468 Ceratophyllum demersum HOM05D005442 ORTHO05D000996 3.6e-56 223.4 228 56.1
PGSC0003DMG400006166 Solanum tuberosum HOM05D005442 ORTHO05D006450 4.7e-56 223.0 486 36.0
CsaV3_2G016200 Cucumis sativus L. HOM05D005442 ORTHO05D006450 1.4e-55 221.5 420 40.7
Ca_03302_v3 Cicer arietinum L. HOM05D005442 ORTHO05D006450 2.3e-55 220.7 298 44.3
Gohir.A03G205700 Gossypium hirsutum HOM05D005442 ORTHO05D006450 1.1e-54 218.4 401 41.1
EL10Ac9g21351 Beta vulgaris HOM05D005442 ORTHO05D006450 2.0e-54 217.6 437 38.9
Phvul.007G018400 Phaseolus vulgaris HOM05D005442 ORTHO05D006450 2.0e-54 217.6 497 36.8
Gorai.005G254900 Gossypium raimondii HOM05D005442 ORTHO05D006450 2.6e-54 217.2 356 43.8
Gohir.D02G227000 Gossypium hirsutum HOM05D005442 ORTHO05D006450 3.3e-54 216.9 356 43.8
AUR62013010 Chenopodium quinoa HOM05D005442 ORTHO05D006450 4.4e-54 216.5 421 39.7
MBI11_g07617_MAGBIO Magnolia biondii HOM05D005442 ORTHO05D006450 4.4e-54 216.5 249 53.4
MSTRG.16924 Avicennia marina HOM05D005442 ORTHO05D006450 2.2e-53 214.2 422 40.5
Lalb_Chr06g0163701 Lupinus albus HOM05D005442 ORTHO05D006450 2.2e-53 214.2 322 45.3
Actinidia32035 Actinidia chinensis HOM05D005442 ORTHO05D006450 2.8e-53 213.8 453 36.2
AUR62010020 Chenopodium quinoa HOM05D005442 ORTHO05D006450 2.8e-53 213.8 290 46.9
CANSAT56G0103 Cannabis sativa HOM05D005442 ORTHO05D006450 3.7e-53 213.4 369 40.1
Cc09_g09800 Coffea canephora HOM05D005442 ORTHO05D006450 3.7e-53 213.4 473 34.7
ECA233G3196 Erigeron canadensis HOM05D005442 ORTHO05D006450 1.4e-52 211.5 313 44.1
ATR0763G134 Amborella trichopoda HOM05D005442 ORTHO05D006450 1.8e-52 211.1 265 48.7
CDE02G3112 Ceratophyllum demersum HOM05D005442 ORTHO05D006450 5.3e-52 209.5 297 46.5
Glyma.20G106900 Glycine max HOM05D005442 ORTHO05D006450 5.3e-52 209.5 474 35.4
Glyma.10G282700 Glycine max HOM05D005442 ORTHO05D006450 1.2e-51 208.4 471 36.1
Duzib132G0277 Durio zibethinus HOM05D005442 ORTHO05D006450 4.5e-51 206.5 362 41.2
FAN15G0807 Fragaria x ananassa HOM05D005442 ORTHO05D006450 5.9e-51 206.1 265 47.9
Aqoxy6G02079 Aquilegia oxysepala HOM05D005442 ORTHO05D006450 7.7e-51 205.7 370 38.6
PSO541G1416 Papaver somniferum HOM05D005442 ORTHO05D006450 1.3e-50 204.9 444 37.6
arahy.Tifrunner.gnm1.ann1.WUXL4S Arachis hypogaea HOM05D005442 ORTHO05D006450 1.7e-50 204.5 475 36.2
Lj5g0013939 Lotus japonicus HOM05D005442 ORTHO05D006450 1.7e-50 204.5 400 36.2
arahy.Tifrunner.gnm1.ann1.ZGQ44R Arachis hypogaea HOM05D005442 ORTHO05D006450 5.0e-50 203.0 475 36.0
FvH4_2g15550 Fragaria vesca HOM05D005442 ORTHO05D006450 6.5e-50 202.6 310 42.9
FAN24G2500 Fragaria x ananassa HOM05D005442 ORTHO05D006450 1.1e-49 201.8 310 42.6
MD05G1123900 Malus domestica HOM05D005442 ORTHO05D006450 5.5e-49 199.5 484 34.5
Medtr1g112820 Medicago truncatula HOM05D005442 ORTHO05D002291 5.5e-49 199.5 342 40.4
PSO675G1865 Papaver somniferum HOM05D005442 ORTHO05D006450 5.5e-49 199.5 443 37.7
Zm00001eb134390 Zea mays HOM05D005442 ORTHO05D006450 9.4e-49 198.7 470 35.3
SGA_v2.0_scaffold58G20356 Striga asiatica HOM05D002097 ORTHO05D002248 3.6e-48 196.8 403 39.2
unitig_744.g24278 Utricularia gibba HOM05D005442 ORTHO05D006450 3.6e-48 196.8 227 49.8
THA.LOC104807379 Tarenaya hassleriana HOM05D005442 ORTHO05D006450 4.7e-48 196.4 314 43.6
Prupe.8G167900 Prunus persica HOM05D005442 ORTHO05D006450 1.2e-46 191.8 464 34.9
HPP92_022180 Vanilla planifolia HOM05D005442 ORTHO05D006450 1.2e-46 191.8 350 42.3
HPP92_022198 Vanilla planifolia HOM05D005442 ORTHO05D006450 1.5e-46 191.4 356 41.9
FAN27G2972 Fragaria x ananassa HOM05D005442 ORTHO05D006450 2.2e-45 187.6 348 39.1
Psat6g232320 Pisum sativum HOM05D005442 ORTHO05D006450 2.2e-45 187.6 432 35.4
FAN20G2789 Fragaria x ananassa HOM05D005442 ORTHO05D006450 2.8e-45 187.2 289 43.3
COL.COLO4_17367 Corchorus olitorius HOM05D005442 ORTHO05D006450 6.3e-45 186.0 362 36.7
RcHm_v2.0_Chr6g0278721 Rosa chinensis HOM05D005442 ORTHO05D006450 1.4e-44 184.9 467 33.8
Os02g0101100 Oryza sativa ssp. japonica HOM05D005442 ORTHO05D006450 9.1e-44 182.2 287 41.5
DCAR_011887 Daucus carota HOM05D005442 ORTHO05D006450 2.0e-43 181.0 341 35.5
Aa31LG8G14120 Aethionema arabicum HOM05D005442 ORTHO05D006450 4.5e-43 179.9 415 37.3
Rhsim05G0053500 Rhododendron simsii HOM05D005442 ORTHO05D006450 2.5e-41 174.1 371 37.5
Migut.B00066 Erythranthe guttata HOM05D005442 ORTHO05D006450 8.0e-40 169.1 472 35.6
Sp3g30220 Schrenkiella parvula HOM05D005442 ORTHO05D006450 2.3e-39 167.5 384 37.8
BcaB03g16428 Brassica carinata HOM05D005442 ORTHO05D006450 8.8e-39 165.6 357 37.5
Thhalv10022629m.g Eutrema salsugineum HOM05D005442 ORTHO05D006450 8.8e-39 165.6 364 39.3
BraA07t28205Z Brassica rapa HOM05D005442 ORTHO05D006450 1.7e-37 161.4 353 38.0
BcaC06g36199 Brassica carinata HOM05D005442 ORTHO05D006450 2.2e-37 161.0 349 37.8
A07p04140 Brassica napus HOM05D005442 ORTHO05D006450 2.2e-37 161.0 349 37.5
BolC7t41079H Brassica oleracea HOM05D005442 ORTHO05D006450 2.2e-37 161.0 349 37.8
Ah.01g023170 Amaranthus hybridus HOM05D005442 ORTHO05D006450 3.7e-37 160.2 235 44.3
C07p06570 Brassica napus HOM05D005442 ORTHO05D006450 6.3e-37 159.5 349 37.5
CARHR033820 Cardamine hirsuta HOM05D005442 ORTHO05D006450 6.3e-37 159.5 359 38.2
Atru.chr3.3284 Acer truncatum HOM05D005442 ORTHO05D006450 8.3e-37 159.1 152 54.6
Lj5A177G53 Lonicera japonica HOM05D005442 ORTHO05D006450 1.1e-36 158.7 175 47.4
arahy.Tifrunner.gnm1.ann1.U87P2U Arachis hypogaea HOM05D005442 ORTHO05D006450 1.8e-36 157.9 168 53.6
Carub.0001s3251 Capsella rubella HOM05D005442 ORTHO05D006450 2.4e-36 157.5 368 36.7
AL1G48920 Arabidopsis lyrata HOM05D005442 ORTHO05D006450 7.0e-36 156.0 366 36.6
HanXRQChr08g0227271 Helianthus annuus HOM05D005442 ORTHO05D006450 1.3e-34 151.8 192 50.0
AT1G34360 Arabidopsis thaliana HOM05D005442 ORTHO05D006450 2.9e-34 150.6 380 36.3
SalBow1G0486 Salvia bowleyana HOM05D005442 ORTHO05D006450 2.5e-33 147.5 421 33.3
TWI79G1761 Tripterygium wilfordii HOM05D005442 ORTHO05D006450 5.2e-31 139.8 217 42.9
HPP92_028071 Vanilla planifolia HOM05D005442 ORTHO05D006450 3.7e-29 133.7 435 33.3
TPR.G2470 Trifolium pratense HOM05D005442 ORTHO05D006450 8.3e-29 132.5 373 32.2
Cc02_g27640 Coffea canephora HOM05D005442 ORTHO05D006450 1.3e-26 125.2 331 31.7
Mapoly0037s0141 Marchantia polymorpha HOM05D005442 ORTHO05D006450 3.8e-26 123.6 232 34.1
VMungo0720G2182 Vigna mungo HOM05D005442 ORTHO05D006450 8.6e-26 122.5 358 33.2
Pp3c16_14950 Physcomitrium patens HOM05D005442 ORTHO05D006450 1.4e-23 115.2 206 39.8
Oeu015514.1 Olea europaea HOM05D005442 ORTHO05D006450 4.0e-23 113.6 420 28.6
Pp3c27_2790 Physcomitrium patens HOM05D005442 ORTHO05D006450 4.0e-23 113.6 193 39.4
Lj5A177G54 Lonicera japonica HOM05D005442 ORTHO05D006450 2.0e-22 111.3 288 36.5
SHI05769 Sapria himalayana HOM05D005442 ORTHO05D006450 5.8e-22 109.8 315 30.5
CAN.G588.93 Capsicum annuum HOM05D005442 ORTHO05D006450 7.0e-20 102.8 175 39.4
Cfa023336 Carpinus fangiana HOM05D005442 ORTHO05D006450 5.0e-18 96.7 245 34.3
SMO171G0119 Selaginella moellendorffii HOM05D005442 ORTHO05D006450 1.9e-17 94.7 199 33.7
Rhsim05G0053300 Rhododendron simsii HOM05D005442 ORTHO05D006450 6.2e-16 89.7 126 46.0
C03p57670 Brassica napus HOM05D005442 ORTHO05D006450 1.2e-14 85.5 113 46.0
AagrBONN_evm.TU.Sc2ySwM_344.3952 Anthoceros agrestis HOM05D005442 ORTHO05D006450 2.0e-14 84.7 217 32.7
BcaC01g02969 Brassica carinata HOM05D005442 ORTHO05D006450 4.4e-14 83.6 107 45.8
BolC3t18042H Brassica oleracea HOM05D005442 ORTHO05D013811 6.4e-13 79.7 110 44.5
Oeu032532.1 Olea europaea HOM05D005442 ORTHO05D006450 2.4e-12 77.8 181 34.8
CAN.G588.92 Capsicum annuum HOM05D005442 ORTHO05D006450 3.2e-12 77.4 287 31.7
C03p57690 Brassica napus HOM05D005442 ORTHO05D013811 4.6e-11 73.6 112 42.9
MD10G1126600 Malus domestica HOM05D005442 ORTHO05D006450 4.6e-11 73.6 80 45.0
Cfa021053 Carpinus fangiana HOM05D004690 ORTHO05D005527 7.8e-11 72.8 180 33.9
MCO13G079 Micromonas commoda HOM05D005442 ORTHO05D006450 1.3e-10 72.0 200 28.5
Potri.009G137000 Populus trichocarpa HOM05D005442 ORTHO05D006450 2.3e-10 71.2 266 32.3
Mapoly0090s0068 Marchantia polymorpha HOM05D004690 ORTHO05D005527 1.9e-09 68.2 183 30.1
Pp3c14_5800 Physcomitrium patens HOM05D004690 ORTHO05D005527 1.9e-09 68.2 205 30.2
Actinidia39161 Actinidia chinensis HOM05D005442 ORTHO05D006450 3.3e-09 67.4 282 30.9
CBR_g29438 Chara braunii HOM05D005442 ORTHO05D006450 3.3e-09 67.4 186 30.1
Rhsim09G0155200 Rhododendron simsii HOM05D005442 ORTHO05D006450 9.5e-09 65.9 59 52.5
COL.COLO4_23958 Corchorus olitorius HOM05D004690 ORTHO05D005527 4.7e-08 63.5 245 28.2
Sed0014938 Sechium edule HOM05D004690 ORTHO05D005527 8.1e-08 62.8 188 27.1
CBR_g7972 Chara braunii HOM05D004690 ORTHO05D005527 1.4e-07 62.0 201 29.9
AagrBONN_evm.TU.Sc2ySwM_228.3886 Anthoceros agrestis HOM05D004690 ORTHO05D005527 5.2e-07 60.1 178 30.3
Actinidia21470 Actinidia chinensis HOM05D005442 ORTHO05D006450 6.8e-07 59.7 223 30.5
Pp3c2_19940 Physcomitrium patens HOM05D004690 ORTHO05D005527 8.9e-07 59.3 225 28.9
CsaV3_2G007620 Cucumis sativus L. HOM05D004690 ORTHO05D005527 1.2e-06 58.9 186 28.5
Hma1.2p1_0028F.1_g017650 Hydrangea macrophylla HOM05D004690 ORTHO05D005527 1.2e-06 58.9 159 28.9
GSVIVG01023642001 Vitis vinifera HOM05D004690 ORTHO05D005527 1.2e-06 58.9 183 27.3
Gohir.A07G037900 Gossypium hirsutum HOM05D004690 ORTHO05D005527 1.5e-06 58.5 244 25.4
Gohir.D07G042000 Gossypium hirsutum HOM05D004690 ORTHO05D005527 1.5e-06 58.5 244 25.4
Gorai.001G044800 Gossypium raimondii HOM05D004690 ORTHO05D005527 1.5e-06 58.5 244 25.4
DCAR_017916 Daucus carota HOM05D004690 ORTHO05D005527 2.6e-06 57.8 165 26.7
BolC3t18043H Brassica oleracea HOM05D008551 ORTHO05D006450 3.4e-06 57.4 74 47.3
Sed0017216 Sechium edule HOM05D004690 ORTHO05D005527 3.4e-06 57.4 186 25.3
THA.LOC104803547 Tarenaya hassleriana HOM05D004690 ORTHO05D005527 3.4e-06 57.4 181 25.4
Solyc07g005830.3 Solanum lycopersicum HOM05D004690 ORTHO05D005527 9.9e-06 55.8 159 27.7
Sopen07g001930 Solanum pennellii HOM05D004690 ORTHO05D005527 9.9e-06 55.8 159 27.7
PGSC0003DMG400011147 Solanum tuberosum HOM05D004690 ORTHO05D005527 9.9e-06 55.8 159 27.7


User provided reference genes

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