Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR142G1836 Punica granatum HOM05D003655 ORTHO05D004065 0.0e+00 1738.8 921 100.0
Manes.15G166100 Manihot esculenta HOM05D003655 ORTHO05D004065 6.6e-243 844.7 955 54.1
Manes.17G115600 Manihot esculenta HOM05D003655 ORTHO05D004065 3.6e-241 839.0 954 54.4
Eucgr.I01752 Eucalyptus grandis HOM05D003655 ORTHO05D004065 4.4e-239 832.0 949 54.8
CiPaw.03G042300 Carya illinoinensis HOM05D003655 ORTHO05D004065 5.2e-232 808.5 941 53.9
Thecc.04G015700 Theobroma cacao HOM05D003655 ORTHO05D004065 7.8e-228 794.7 948 51.4
QL02p075116 Quercus lobata HOM05D003655 ORTHO05D004065 1.0e-227 794.3 1016 50.6
Ciclev10014173m.g Citrus clementina HOM05D003655 ORTHO05D004065 1.4e-224 783.9 955 52.5
Prupe.3G290100 Prunus persica HOM05D003655 ORTHO05D004065 8.9e-224 781.2 954 52.7
Dinv35101 Davidia involucrata HOM05D003655 ORTHO05D004065 1.5e-223 780.4 904 52.7
CSS0048500 Camellia sinensis var. sinensis HOM05D003655 ORTHO05D004065 1.4e-221 773.9 953 52.4
RcHm_v2.0_Chr2g0173051 Rosa chinensis HOM05D003655 ORTHO05D004065 1.9e-221 773.5 949 52.2
Potri.017G072100 Populus trichocarpa HOM05D003655 ORTHO05D004065 5.1e-219 765.4 950 51.6
COL.COLO4_29094 Corchorus olitorius HOM05D003655 ORTHO05D004065 1.1e-218 764.2 949 51.2
FAN14G5704 Fragaria x ananassa HOM05D003655 ORTHO05D004065 1.9e-218 763.5 950 51.5
FvH4_6g51350 Fragaria vesca HOM05D003655 ORTHO05D004065 3.3e-218 762.7 949 51.5
MD09G1028400 Malus domestica HOM05D003655 ORTHO05D004065 5.6e-218 761.9 951 51.5
MD17G1029900 Malus domestica HOM05D003655 ORTHO05D004065 9.5e-218 761.1 948 52.1
FAN05G2840 Fragaria x ananassa HOM05D003655 ORTHO05D004065 2.8e-217 759.6 951 51.5
Haze_14727 Corylus avellana HOM05D003655 ORTHO05D004065 4.4e-215 752.3 943 51.9
CSS0034547 Camellia sinensis var. sinensis HOM05D003655 ORTHO05D004065 7.6e-215 751.5 949 50.8
FAN09G1146 Fragaria x ananassa HOM05D003655 ORTHO05D004065 6.4e-214 748.4 950 51.4
CSS0046674 Camellia sinensis var. sinensis HOM05D003655 ORTHO05D004065 1.9e-213 746.9 949 50.6
Sabra16G0231200 Salix brachista HOM05D003655 ORTHO05D004065 1.3e-211 740.7 1009 49.1
TWI56G0063 Tripterygium wilfordii HOM05D003655 ORTHO05D004065 1.7e-211 740.3 958 49.8
Duzib187G1135 Durio zibethinus HOM05D003655 ORTHO05D004065 1.5e-210 737.3 944 49.5
FAN02G0206 Fragaria x ananassa HOM05D003655 ORTHO05D004065 1.5e-210 737.3 952 51.3
Gohir.D04G057000 Gossypium hirsutum HOM05D003655 ORTHO05D004065 5.2e-208 728.8 949 48.4
Gorai.012G063700 Gossypium raimondii HOM05D003655 ORTHO05D004065 6.9e-208 728.4 949 48.4
Gohir.A05G356200 Gossypium hirsutum HOM05D003655 ORTHO05D004065 3.4e-207 726.1 949 48.3
vmacro18276 Vaccinium macrocarpon HOM05D003655 ORTHO05D004065 8.4e-206 721.5 943 48.9
Rhsim08G0051400 Rhododendron simsii HOM05D003655 ORTHO05D004065 1.4e-205 720.7 921 49.4
Potri.001G351532 Populus trichocarpa HOM05D003655 ORTHO05D004065 2.4e-205 719.9 956 49.6
Glyma.19G004000 Glycine max HOM05D003655 ORTHO05D004065 1.5e-202 710.7 949 50.3
Gohir.D09G028200 Gossypium hirsutum HOM05D003655 ORTHO05D004065 1.9e-202 710.3 952 46.3
TAR622G0533 Trochodendron aralioides HOM05D003655 ORTHO05D004065 2.5e-202 709.9 964 50.5
Gorai.006G032800 Gossypium raimondii HOM05D003655 ORTHO05D004065 3.3e-202 709.5 954 46.3
Glyma.05G004100 Glycine max HOM05D003655 ORTHO05D004065 9.0e-200 701.4 949 50.1
Nn4g22660 Nelumbo nucifera HOM05D003655 ORTHO05D004065 4.9e-198 695.7 956 49.6
MBI10_g00730_MAGBIO Magnolia biondii HOM05D003655 ORTHO05D004065 2.7e-196 689.9 927 48.2
Gohir.A09G028600 Gossypium hirsutum HOM05D003655 ORTHO05D004065 4.6e-196 689.1 950 45.9
CANSAT64G1680 Cannabis sativa HOM05D003655 ORTHO05D004065 7.9e-196 688.3 948 49.3
Cc07_g01820 Coffea canephora HOM05D003655 ORTHO05D004065 3.9e-195 686.0 939 48.2
Duzib264G1220 Durio zibethinus HOM05D003655 ORTHO05D004065 1.1e-194 684.5 942 45.9
Phvul.004G007600 Phaseolus vulgaris HOM05D003655 ORTHO05D004065 1.6e-193 680.6 952 48.3
Psat1g054960 Pisum sativum HOM05D003655 ORTHO05D004065 2.6e-191 673.3 925 48.4
VMungo0464G0503 Vigna mungo HOM05D003655 ORTHO05D004065 1.7e-190 670.6 957 48.4
Dinv33450 Davidia involucrata HOM05D003655 ORTHO05D004065 6.4e-190 668.7 674 59.9
Medtr6g004970 Medicago truncatula HOM05D003655 ORTHO05D004065 2.4e-189 666.8 930 48.3
Nitab4.5_0000419g0080 Nicotiana tabacum HOM05D003655 ORTHO05D004065 4.6e-188 662.5 919 47.7
Sed0000390 Sechium edule HOM05D003655 ORTHO05D004065 2.3e-187 660.2 938 46.7
Gohir.A07G222600 Gossypium hirsutum HOM05D003655 ORTHO05D004065 3.0e-187 659.8 918 44.8
Sabra17G0060300 Salix brachista HOM05D003655 ORTHO05D004065 3.9e-187 659.4 946 47.3
arahy.Tifrunner.gnm1.ann1.MY3LMM Arachis hypogaea HOM05D003655 ORTHO05D004065 1.5e-186 657.5 946 46.7
Gorai.001G264400 Gossypium raimondii HOM05D003655 ORTHO05D004065 4.3e-186 656.0 869 46.3
MELO3C009984.2 Cucumis melo HOM05D003655 ORTHO05D004065 8.2e-185 651.7 938 47.1
Gohir.D07G229300 Gossypium hirsutum HOM05D003655 ORTHO05D004065 3.1e-184 649.8 869 46.1
Lj2g0025004 Lotus japonicus HOM05D003655 ORTHO05D004065 1.5e-183 647.5 953 46.8
Sopen12g014870 Solanum pennellii HOM05D003655 ORTHO05D004065 7.6e-183 645.2 844 47.6
MSTRG.24033 Avicennia marina HOM05D003655 ORTHO05D004065 1.7e-182 644.0 949 46.5
CsaV3_3G042720 Cucumis sativus L. HOM05D003655 ORTHO05D004065 2.2e-182 643.7 936 46.9
Actinidia35766 Actinidia chinensis HOM05D003655 ORTHO05D004065 1.4e-181 641.0 927 47.6
PGSC0003DMG400004231 Solanum tuberosum HOM05D003655 ORTHO05D004065 1.2e-180 637.9 889 47.2
Lalb_Chr06g0175811 Lupinus albus HOM05D003655 ORTHO05D004065 1.6e-180 637.5 927 48.2
Solyc12g035250.3 Solanum lycopersicum HOM05D003655 ORTHO05D004065 1.6e-180 637.5 844 47.3
Peaxi162Scf00700g00429 Petunia axillaris HOM05D003655 ORTHO05D004065 7.9e-180 635.2 917 46.5
DCAR_011248 Daucus carota HOM05D003655 ORTHO05D004065 1.0e-179 634.8 953 46.4
MSTRG.3149 Avicennia marina HOM05D003655 ORTHO05D004065 6.7e-179 632.1 878 47.8
Sc03g0007560 Simmondsia chinensis HOM05D003655 ORTHO05D004065 1.1e-178 631.3 901 46.6
TAR629G1826 Trochodendron aralioides HOM05D003655 ORTHO05D004065 7.4e-178 628.6 974 46.5
ClCG10G013970 Citrullus lanatus HOM05D003655 ORTHO05D004065 1.3e-177 627.9 940 46.5
EL10Ac2g04412 Beta vulgaris HOM05D003655 ORTHO05D004065 2.8e-177 626.7 914 47.7
Sed0015855 Sechium edule HOM05D003655 ORTHO05D004065 1.1e-176 624.8 907 47.4
Migut.H00084 Erythranthe guttata HOM05D003655 ORTHO05D004065 1.4e-176 624.4 920 46.5
Actinidia36106 Actinidia chinensis HOM05D003655 ORTHO05D004065 1.8e-176 624.0 790 51.4
Lj4C88T15 Lonicera japonica HOM05D003655 ORTHO05D004065 1.8e-176 624.0 954 44.8
PGSC0003DMG400012599 Solanum tuberosum HOM05D003655 ORTHO05D004065 5.3e-176 622.5 868 45.4
Sopen02g031240 Solanum pennellii HOM05D003655 ORTHO05D004065 6.9e-176 622.1 868 45.7
AUR62023138 Chenopodium quinoa HOM05D003655 ORTHO05D004065 5.5e-173 612.5 916 47.6
Peaxi162Scf00129g01426 Petunia axillaris HOM05D003655 ORTHO05D004065 5.5e-173 612.5 926 45.0
FAN05G1583 Fragaria x ananassa HOM05D003655 ORTHO05D004065 1.8e-171 607.4 949 44.9
Hund16251 Selenicereus undatus HOM05D003655 ORTHO05D004065 2.3e-171 607.1 907 45.8
SGA_v2.0_scaffold135G34898 Striga asiatica HOM05D003655 ORTHO05D004065 1.1e-170 604.7 938 44.9
Oeu063478.1 Olea europaea HOM05D003655 ORTHO05D004065 1.3e-169 601.3 900 44.2
SalBow6G0256 Salvia bowleyana HOM05D003655 ORTHO05D004065 2.8e-169 600.1 918 46.1
TPR.G14089 Trifolium pratense HOM05D003655 ORTHO05D004065 1.1e-168 598.2 1019 43.1
AUR62009456 Chenopodium quinoa HOM05D003655 ORTHO05D004065 5.9e-167 592.4 944 45.8
PSO832G3537 Papaver somniferum HOM05D003655 ORTHO05D004065 5.0e-166 589.3 975 44.5
Gohir.D11G070750 Gossypium hirsutum HOM05D003655 ORTHO05D004065 8.5e-166 588.6 931 44.5
Nitab4.5_0002385g0010 Nicotiana tabacum HOM05D003655 ORTHO05D004065 7.2e-165 585.5 921 44.8
Ah.10g038310 Amaranthus hybridus HOM05D003655 ORTHO05D004065 1.8e-163 580.9 917 45.0
Lj4A88G37 Lonicera japonica HOM05D003655 ORTHO05D004065 3.4e-159 566.6 947 44.2
PSO063G4513 Papaver somniferum HOM05D003655 ORTHO05D004065 1.3e-158 564.7 899 45.9
ECA238G4588 Erigeron canadensis HOM05D003655 ORTHO05D004065 2.9e-158 563.5 933 42.1
HanXRQChr14g0450511 Helianthus annuus HOM05D003655 ORTHO05D004065 3.0e-155 553.5 917 44.2
Ca_04156_v3 Cicer arietinum L. HOM05D003655 ORTHO05D004065 1.1e-154 551.6 678 53.4
Lsat_1_v5_gn_2_91520 Lactuca sativa HOM05D003655 ORTHO05D004065 1.5e-154 551.2 917 42.9
Cpa.g.sc108.55 Carica papaya HOM05D003655 ORTHO05D004065 2.2e-153 547.4 614 54.6
SGA_v2.0_scaffold481G52311 Striga asiatica HOM05D003655 ORTHO05D004065 1.4e-152 544.7 901 44.2
ATR0568G013 Amborella trichopoda HOM05D003655 ORTHO05D004065 1.6e-151 541.2 899 41.5
THA.LOC104805377 Tarenaya hassleriana HOM05D003655 ORTHO05D004065 1.5e-149 534.6 895 41.9
AL5G17140 Arabidopsis lyrata HOM05D003655 ORTHO05D004065 4.2e-149 533.1 858 44.6
CARHR149170 Cardamine hirsuta HOM05D003655 ORTHO05D004065 2.1e-148 530.8 918 43.0
THA.LOC104823948 Tarenaya hassleriana HOM05D003655 ORTHO05D004065 4.7e-148 529.6 927 41.1
Carub.0005s0625 Capsella rubella HOM05D003655 ORTHO05D004065 1.0e-147 528.5 973 41.4
Hma1.2p1_1291F.1_g273550 Hydrangea macrophylla HOM05D003655 ORTHO05D004065 1.4e-147 528.1 887 42.6
AT3G27700 Arabidopsis thaliana HOM05D003655 ORTHO05D004065 1.7e-145 521.2 866 44.3
Nitab4.5_0006802g0070 Nicotiana tabacum HOM05D003655 ORTHO05D004065 8.2e-145 518.8 911 40.5
HanXRQChr07g0198951 Helianthus annuus HOM05D003655 ORTHO05D004065 1.4e-144 518.1 884 43.3
Thhalv10003632m.g Eutrema salsugineum HOM05D003655 ORTHO05D004065 2.0e-143 514.2 949 41.8
Sp2g16820 Schrenkiella parvula HOM05D003655 ORTHO05D004065 2.0e-143 514.2 942 41.7
Aa31LG2G4980 Aethionema arabicum HOM05D003655 ORTHO05D004065 1.4e-139 501.5 934 39.1
Actinidia39401 Actinidia chinensis HOM05D003655 ORTHO05D004065 1.2e-138 498.4 932 40.6
GSVIVG01032423001 Vitis vinifera HOM05D003655 ORTHO05D004065 3.4e-138 496.9 853 42.2
A06p40940 Brassica napus HOM05D003655 ORTHO05D004065 1.7e-137 494.6 938 41.2
Solyc02g086510.4 Solanum lycopersicum HOM05D003655 ORTHO05D004065 3.7e-137 493.4 703 47.5
BraA06t27015Z Brassica rapa HOM05D003655 ORTHO05D004065 1.4e-136 491.5 934 40.9
Aa31LG2G4970 Aethionema arabicum HOM05D003655 ORTHO05D004065 1.2e-135 488.4 929 40.9
A02p35600 Brassica napus HOM05D003655 ORTHO05D004065 2.7e-135 487.3 957 41.2
BolC2t11504H Brassica oleracea HOM05D003655 ORTHO05D004065 5.9e-135 486.1 937 40.9
BraA02t08562Z Brassica rapa HOM05D003655 ORTHO05D004065 7.7e-135 485.7 959 41.1
C07p36880 Brassica napus HOM05D003655 ORTHO05D004065 1.0e-134 485.3 967 40.6
BolC7t44200H Brassica oleracea HOM05D003655 ORTHO05D004065 1.0e-134 485.3 967 40.6
PGR083G1229 Punica granatum HOM05D003655 ORTHO05D004065 1.7e-134 484.6 830 41.8
unitig_0.g1601 Utricularia gibba HOM05D003655 ORTHO05D004065 6.5e-134 482.6 921 41.8
BcaC03g17479 Brassica carinata HOM05D003655 ORTHO05D004065 8.6e-134 482.3 958 40.6
C02p54430 Brassica napus HOM05D003655 ORTHO05D004065 4.2e-133 479.9 937 40.8
Ah.16g100890 Amaranthus hybridus HOM05D003655 ORTHO05D004065 5.5e-133 479.6 943 40.8
BcaB07g30148 Brassica carinata HOM05D003655 ORTHO05D004065 1.6e-132 478.0 919 40.2
Os04g0394300 Oryza sativa ssp. japonica HOM05D003655 ORTHO05D004065 2.8e-132 477.2 818 42.1
Aqoxy3G01151 Aquilegia oxysepala HOM05D003655 ORTHO05D004065 1.3e-129 468.4 680 49.6
HanXRQChr09g0255101 Helianthus annuus HOM05D003655 ORTHO05D004065 4.1e-128 463.4 865 40.7
Zm00001eb085110 Zea mays HOM05D003655 ORTHO05D004065 4.1e-128 463.4 837 41.2
unitig_748.g6986 Utricularia gibba HOM05D003655 ORTHO05D004065 1.5e-125 454.9 931 39.4
CDE06G2242 Ceratophyllum demersum HOM05D003655 ORTHO05D004065 1.6e-124 451.4 929 40.0
Atru.chr6.2366 Acer truncatum HOM05D003655 ORTHO05D004065 7.0e-120 436.0 478 56.1
Gorai.007G075900 Gossypium raimondii HOM05D003655 ORTHO05D004065 2.0e-119 434.5 640 45.2
Actinidia06004 Actinidia chinensis HOM05D003655 ORTHO05D004065 2.8e-116 424.1 707 44.0
CiPaw.04G027900 Carya illinoinensis HOM05D003655 ORTHO05D004065 8.3e-113 412.5 493 52.1
SEGI_17646 Sequoiadendron giganteum HOM05D003655 ORTHO05D004065 9.9e-106 389.0 998 35.4
Lsat_1_v5_gn_4_183501 Lactuca sativa HOM05D003655 ORTHO05D004065 1.3e-102 378.6 857 36.2
BcaC06g30963 Brassica carinata HOM05D003655 ORTHO05D004065 6.6e-102 376.3 591 45.5
CDE04G0669 Ceratophyllum demersum HOM05D003655 ORTHO05D004065 6.2e-100 369.8 860 38.8
HPP92_000306 Vanilla planifolia HOM05D003655 ORTHO05D004065 2.9e-89 334.3 550 42.0
Nitab4.5_0002682g0090 Nicotiana tabacum HOM05D003655 ORTHO05D004065 8.7e-86 322.8 907 32.3
Mapoly0078s0024 Marchantia polymorpha HOM05D003655 ORTHO05D004065 9.6e-85 319.3 997 32.0
Gohir.A11G066766 Gossypium hirsutum HOM05D003655 ORTHO05D004065 2.1e-84 318.2 412 47.6
Pp3c2_22950 Physcomitrium patens HOM05D003655 ORTHO05D004065 1.2e-82 312.4 833 32.4
Pp3c2_21410 Physcomitrium patens HOM05D003655 ORTHO05D004065 1.3e-81 308.9 772 33.5
SEGI_07755 Sequoiadendron giganteum HOM05D003655 ORTHO05D004065 1.1e-80 305.8 893 33.3
Pp3c1_17760 Physcomitrium patens HOM05D003655 ORTHO05D004065 1.2e-79 302.4 810 32.6
Atru.chr6.2365 Acer truncatum HOM05D003655 ORTHO05D004065 1.9e-69 268.5 289 55.7
Actinidia16938 Actinidia chinensis HOM05D003655 ORTHO05D004065 4.8e-68 263.8 337 48.7
Medtr2g449870 Medicago truncatula HOM05D003655 ORTHO05D004065 1.2e-63 249.2 371 45.8
Prupe.3G289600 Prunus persica HOM05D003655 ORTHO05D004065 1.3e-62 245.7 356 49.4
SMO367G0495 Selaginella moellendorffii HOM05D003655 ORTHO05D004065 1.0e-57 229.6 816 30.1
Nn3g16761 Nelumbo nucifera HOM05D003655 ORTHO05D004065 8.2e-52 209.9 272 51.5
Sopen02g031230 Solanum pennellii HOM05D003655 ORTHO05D004065 1.8e-51 208.8 368 42.4
Atru.chr6.2272 Acer truncatum HOM05D003655 ORTHO05D004065 5.3e-51 207.2 226 56.2
SHI22312 Sapria himalayana HOM05D003655 ORTHO05D004065 8.5e-49 199.9 398 40.2
Pp3c1_20440 Physcomitrium patens HOM05D003655 ORTHO05D004065 2.3e-46 191.8 561 31.2
Cpa.g.sc108.56 Carica papaya HOM05D003655 ORTHO05D004065 2.9e-41 174.9 295 43.4
PSO017G6373 Papaver somniferum HOM05D003655 ORTHO05D004065 2.7e-39 168.3 490 30.4
SHI22307 Sapria himalayana HOM05D003655 ORTHO05D004065 6.1e-39 167.2 272 46.0
Haze_14709 Corylus avellana HOM05D003655 ORTHO05D004065 1.3e-36 159.5 114 66.7
CiPaw.04G028000 Carya illinoinensis HOM05D003655 ORTHO05D004065 2.7e-31 141.7 174 48.3
Gohir.A11G066633 Gossypium hirsutum HOM05D003655 ORTHO05D004065 9.7e-29 133.3 271 39.9
Ca_06248_v3 Cicer arietinum L. HOM05D003655 ORTHO05D004065 1.4e-27 129.4 274 37.2
Cfa007935 Carpinus fangiana HOM05D003655 ORTHO05D004065 3.5e-26 124.8 105 58.1
Medtr2g449950 Medicago truncatula HOM05D003655 ORTHO05D004065 1.9e-24 119.0 163 46.6
Sopen01g024710 Solanum pennellii HOM05D003655 ORTHO05D004065 8.8e-22 110.2 118 53.4
CBR_g4653 Chara braunii HOM05D003655 ORTHO05D004065 1.4e-14 86.3 210 35.2
Medtr2g449970 Medicago truncatula HOM05D003655 ORTHO05D004065 4.1e-11 74.7 41 80.5
Peaxi162Scf00417g00004 Petunia axillaris HOM05D003655 ORTHO05D004065 9.2e-11 73.6 158 36.1
Sopen01g024690 Solanum pennellii HOM05D000006 ORTHO05D000695 2.7e-10 72.0 129 38.0
Actinidia25101 Actinidia chinensis HOM05D003655 ORTHO05D004065 1.3e-09 69.7 114 40.4
Atru.chr6.2364 Acer truncatum HOM05D003655 ORTHO05D004065 2.3e-09 68.9 88 56.8
Solyc01g058690.1 Solanum lycopersicum HOM05D003655 ORTHO05D004065 2.9e-09 68.6 119 42.0
Ca_31040_v3 Cicer arietinum L. HOM05D003655 ORTHO05D004065 3.9e-09 68.2 125 37.6
Ca_29533_v3 Cicer arietinum L. HOM05D003655 ORTHO05D004065 5.0e-09 67.8 125 40.0
CBR_g57010 Chara braunii HOM05D003655 ORTHO05D004065 9.5e-08 63.5 66 43.9


User provided reference genes

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