Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR142G1812 Punica granatum HOM05D003492 ORTHO05D005115 0.0e+00 3539.6 1781 100.0
Dinv10611 Davidia involucrata HOM05D003492 ORTHO05D005115 0.0e+00 2470.7 1849 68.9
Manes.07G131200 Manihot esculenta HOM05D003492 ORTHO05D005115 0.0e+00 2459.9 1828 69.0
Prupe.2G252000 Prunus persica HOM05D003492 ORTHO05D005115 0.0e+00 2448.3 1823 68.3
MD07G1223400 Malus domestica HOM05D003492 ORTHO05D005115 0.0e+00 2438.7 1829 67.4
Gohir.D10G252000 Gossypium hirsutum HOM05D003492 ORTHO05D005115 0.0e+00 2430.6 1828 68.4
CANSAT56G1673 Cannabis sativa HOM05D003492 ORTHO05D005115 0.0e+00 2429.8 1836 67.6
Potri.008G070300 Populus trichocarpa HOM05D003492 ORTHO05D005115 0.0e+00 2429.4 1828 68.3
QL08p063313 Quercus lobata HOM05D003492 ORTHO05D005115 0.0e+00 2427.9 1938 65.4
Gorai.011G292500 Gossypium raimondii HOM05D003492 ORTHO05D005115 0.0e+00 2426.7 1828 68.4
Atru.chr12.67 Acer truncatum HOM05D003492 ORTHO05D005115 0.0e+00 2414.0 1834 67.5
TWI09G0940 Tripterygium wilfordii HOM05D003492 ORTHO05D005115 0.0e+00 2411.7 1831 66.8
vmacro10035 Vaccinium macrocarpon HOM05D003492 ORTHO05D005115 0.0e+00 2405.6 1944 64.7
Duzib106G0351 Durio zibethinus HOM05D003492 ORTHO05D005115 0.0e+00 2404.8 1825 67.5
Cfa001305 Carpinus fangiana HOM05D003492 ORTHO05D005115 0.0e+00 2401.7 1792 68.8
GSVIVG01032797001 Vitis vinifera HOM05D003492 ORTHO05D005115 0.0e+00 2393.2 1933 65.0
RcHm_v2.0_Chr1g0370461 Rosa chinensis HOM05D003492 ORTHO05D005115 0.0e+00 2383.6 1834 66.4
FvH4_7g24630 Fragaria vesca HOM05D003492 ORTHO05D005115 0.0e+00 2375.9 1834 66.4
Rhsim09G0177900 Rhododendron simsii HOM05D003492 ORTHO05D005115 0.0e+00 2371.3 1926 64.5
Eucgr.G03070 Eucalyptus grandis HOM05D003492 ORTHO05D005115 0.0e+00 2364.7 1728 69.0
FAN06G4945 Fragaria x ananassa HOM05D003492 ORTHO05D005115 0.0e+00 2358.9 1840 66.0
Nn2g10890 Nelumbo nucifera HOM05D003492 ORTHO05D005115 0.0e+00 2352.0 1824 66.0
FAN10G4174 Fragaria x ananassa HOM05D003492 ORTHO05D005115 0.0e+00 2349.7 1852 65.5
Thecc.10G014500 Theobroma cacao HOM05D003492 ORTHO05D005115 0.0e+00 2340.1 1701 70.3
Sabra08G0051700 Salix brachista HOM05D003492 ORTHO05D005115 0.0e+00 2333.9 1963 63.0
FAN01G1605 Fragaria x ananassa HOM05D003492 ORTHO05D005115 0.0e+00 2324.3 1887 63.9
Haze_17240 Corylus avellana HOM05D003492 ORTHO05D005115 0.0e+00 2307.7 1893 64.2
Lalb_Chr04g0250511 Lupinus albus HOM05D003492 ORTHO05D005115 0.0e+00 2297.7 1824 64.5
TPR.G38386 Trifolium pratense HOM05D003492 ORTHO05D005115 0.0e+00 2296.9 1824 64.3
LjContig00357g0011776 Lotus japonicus HOM05D003492 ORTHO05D005115 0.0e+00 2295.0 1824 64.3
Glyma.02G258100 Glycine max HOM05D003492 ORTHO05D005115 0.0e+00 2290.4 1832 64.1
Phvul.008G222900 Phaseolus vulgaris HOM05D003492 ORTHO05D005115 0.0e+00 2278.8 1822 63.7
MELO3C026794.2 Cucumis melo HOM05D003492 ORTHO05D005115 0.0e+00 2278.1 1828 64.3
Medtr5g082890 Medicago truncatula HOM05D003492 ORTHO05D005115 0.0e+00 2277.3 1821 64.0
Ca_05974_v3 Cicer arietinum L. HOM05D003492 ORTHO05D005115 0.0e+00 2273.4 1824 63.8
Sed0003450 Sechium edule HOM05D003492 ORTHO05D005115 0.0e+00 2269.6 1829 63.9
PSO339G2087 Papaver somniferum HOM05D003492 ORTHO05D005115 0.0e+00 2267.7 1824 63.5
arahy.Tifrunner.gnm1.ann1.J7W2E5 Arachis hypogaea HOM05D003492 ORTHO05D005115 0.0e+00 2266.9 1827 64.3
CsaV3_5G010260 Cucumis sativus L. HOM05D003492 ORTHO05D005115 0.0e+00 2260.0 1828 64.1
ClCG07G004320 Citrullus lanatus HOM05D003492 ORTHO05D005115 0.0e+00 2259.2 1828 64.1
Psat2g032000 Pisum sativum HOM05D003492 ORTHO05D005115 0.0e+00 2253.8 1838 62.8
PSO384G0172 Papaver somniferum HOM05D003492 ORTHO05D005115 0.0e+00 2252.2 1824 63.3
arahy.Tifrunner.gnm1.ann1.V2YUX7 Arachis hypogaea HOM05D003492 ORTHO05D005115 0.0e+00 2248.8 1860 63.2
Aqoxy4G02502 Aquilegia oxysepala HOM05D003492 ORTHO05D005115 0.0e+00 2248.4 1827 62.8
Glyma.14G058400 Glycine max HOM05D003492 ORTHO05D005115 0.0e+00 2238.4 1825 63.0
CSS0013780 Camellia sinensis var. sinensis HOM05D003492 ORTHO05D005115 0.0e+00 2238.0 1827 64.3
Lsat_1_v5_gn_2_124500 Lactuca sativa HOM05D003492 ORTHO05D005115 0.0e+00 2235.7 1830 63.1
Sc11g0005130 Simmondsia chinensis HOM05D003492 ORTHO05D005115 0.0e+00 2222.2 1820 62.5
VMungo0647G1152 Vigna mungo HOM05D003492 ORTHO05D005115 0.0e+00 2202.2 1825 62.2
Sopen06g014600 Solanum pennellii HOM05D003492 ORTHO05D005115 0.0e+00 2200.6 1823 62.9
AUR62012268 Chenopodium quinoa HOM05D003492 ORTHO05D005115 0.0e+00 2176.4 1820 62.1
MSTRG.8339 Avicennia marina HOM05D003492 ORTHO05D005115 0.0e+00 2173.3 1823 61.8
Gohir.A10G240100 Gossypium hirsutum HOM05D003492 ORTHO05D005115 0.0e+00 2168.7 1593 69.2
THA.LOC104816541 Tarenaya hassleriana HOM05D003492 ORTHO05D005115 0.0e+00 2167.9 1827 61.3
HanXRQChr14g0459601 Helianthus annuus HOM05D003492 ORTHO05D005115 0.0e+00 2166.0 1827 60.9
ECA238G3428 Erigeron canadensis HOM05D003492 ORTHO05D005115 0.0e+00 2162.5 1822 61.4
Migut.F01404 Erythranthe guttata HOM05D003492 ORTHO05D005115 0.0e+00 2149.4 1828 60.5
Sp6g37310 Schrenkiella parvula HOM05D003492 ORTHO05D005115 0.0e+00 2122.8 1824 60.2
AUR62022903 Chenopodium quinoa HOM05D003492 ORTHO05D005115 0.0e+00 2121.7 1834 61.1
BcaB01g05759 Brassica carinata HOM05D003492 ORTHO05D005115 0.0e+00 2121.3 1823 60.2
AL6G15450 Arabidopsis lyrata HOM05D003492 ORTHO05D005115 0.0e+00 2112.8 1827 59.9
DCAR_011823 Daucus carota HOM05D003492 ORTHO05D005115 0.0e+00 2108.2 1723 63.3
Carub.0006s0446 Capsella rubella HOM05D003492 ORTHO05D005115 0.0e+00 2107.8 1831 60.1
Solyc06g048460.2 Solanum lycopersicum HOM05D003492 ORTHO05D005115 0.0e+00 2106.3 1695 64.6
AT5G05560 Arabidopsis thaliana HOM05D003492 ORTHO05D005115 0.0e+00 2105.9 1825 59.9
EL10Ac2g04850 Beta vulgaris HOM05D003492 ORTHO05D005115 0.0e+00 2100.9 1945 57.4
C02p02390 Brassica napus HOM05D003492 ORTHO05D005115 0.0e+00 2090.1 1837 59.4
BraA03t09597Z Brassica rapa HOM05D003492 ORTHO05D005115 0.0e+00 2076.2 1833 59.3
CARHR207700 Cardamine hirsuta HOM05D003492 ORTHO05D005115 0.0e+00 2067.4 1823 59.5
BraA02t04853Z Brassica rapa HOM05D003492 ORTHO05D005115 0.0e+00 2062.0 1863 58.9
BcaB01g05953 Brassica carinata HOM05D003492 ORTHO05D005115 0.0e+00 2039.6 1825 58.8
C03p02660 Brassica napus HOM05D003492 ORTHO05D005115 0.0e+00 2039.2 1847 58.5
A03p02330 Brassica napus HOM05D003492 ORTHO05D005115 0.0e+00 2034.6 1805 59.4
SGA_v2.0_scaffold365G49997 Striga asiatica HOM05D003492 ORTHO05D005115 0.0e+00 2022.7 1845 57.6
BolC2t06204H Brassica oleracea HOM05D003492 ORTHO05D005115 0.0e+00 2015.4 1838 58.3
BolC3t12820H Brassica oleracea HOM05D003492 ORTHO05D005115 0.0e+00 2007.3 1857 57.6
Aa31LG11G6620 Aethionema arabicum HOM05D003492 ORTHO05D005115 0.0e+00 1995.7 1857 57.1
ATR0681G383 Amborella trichopoda HOM05D003492 ORTHO05D005115 0.0e+00 1961.8 1835 55.3
Ciclev10030498m.g Citrus clementina HOM05D003492 ORTHO05D005115 0.0e+00 1955.6 1447 68.7
Ah.16g103640 Amaranthus hybridus HOM05D003492 ORTHO05D005115 0.0e+00 1952.9 1832 57.4
Cpa.g.sc19.161 Carica papaya HOM05D003492 ORTHO05D005115 0.0e+00 1925.6 1858 56.9
Thhalv10012420m.g Eutrema salsugineum HOM05D003492 ORTHO05D005115 0.0e+00 1902.1 1840 56.2
Nitab4.5_0000797g0050 Nicotiana tabacum HOM05D003492 ORTHO05D005115 0.0e+00 1901.7 1768 58.8
TAR623G0495 Trochodendron aralioides HOM05D003492 ORTHO05D005115 0.0e+00 1857.0 1445 66.9
BcaB05g21711 Brassica carinata HOM05D003492 ORTHO05D005115 0.0e+00 1691.8 1491 60.4
FAN03G1412 Fragaria x ananassa HOM05D003492 ORTHO05D005115 0.0e+00 1584.3 1211 66.3
Hund15919 Selenicereus undatus HOM05D003492 ORTHO05D005115 0.0e+00 1558.5 1222 64.6
Cc02_g06280 Coffea canephora HOM05D003492 ORTHO05D005115 0.0e+00 1556.6 1326 61.8
unitig_60.g25675 Utricularia gibba HOM05D003492 ORTHO05D005115 0.0e+00 1506.9 1730 48.9
Oeu049666.1 Olea europaea HOM05D003492 ORTHO05D005115 0.0e+00 1494.6 1409 57.5
Pp3c11_19460 Physcomitrium patens HOM05D003492 ORTHO05D005115 0.0e+00 1363.6 1946 41.3
CiPaw.01G300000 Carya illinoinensis HOM05D003492 ORTHO05D005115 0.0e+00 1355.1 968 71.2
Mapoly0044s0071 Marchantia polymorpha HOM05D003492 ORTHO05D005115 0.0e+00 1338.2 1892 41.3
Actinidia13945 Actinidia chinensis HOM05D003492 ORTHO05D005115 0.0e+00 1331.6 1053 65.7
AagrBONN_evm.TU.Sc2ySwM_344.5492 Anthoceros agrestis HOM05D003492 ORTHO05D005115 0.0e+00 1303.1 1783 42.6
Nitab4.5_0011089g0010 Nicotiana tabacum HOM05D003492 ORTHO05D005115 0.0e+00 1189.1 1348 51.7
Os05g0354300 Oryza sativa ssp. japonica HOM05D003492 ORTHO05D005115 0.0e+00 1130.2 930 60.8
MBI15_g19421_MAGBIO Magnolia biondii HOM05D003492 ORTHO05D005115 0.0e+00 1114.0 1154 54.6
Zm00001eb286110 Zea mays HOM05D003492 ORTHO05D005115 0.0e+00 1113.6 1208 50.9
SMO331G0080 Selaginella moellendorffii HOM05D003492 ORTHO05D005115 0.0e+00 1083.2 1852 38.1
Peaxi162Scf00284g00913 Petunia axillaris HOM05D003492 ORTHO05D005115 9.6e-299 1031.2 785 66.8
HPP92_012039 Vanilla planifolia HOM05D003492 ORTHO05D005115 1.1e-294 1017.7 903 57.6
Peaxi162Scf00284g00912 Petunia axillaris HOM05D003492 ORTHO05D005115 1.0e-276 958.0 912 57.6
Lj8C65G6 Lonicera japonica HOM05D003492 ORTHO05D005115 3.3e-275 953.0 918 58.0
CBR_g22845 Chara braunii HOM05D003492 ORTHO05D005115 1.1e-273 948.0 2149 32.9
CAN.G78.68 Capsicum annuum HOM05D003492 ORTHO05D005115 5.0e-247 859.4 815 56.7
CiPaw.01G300100 Carya illinoinensis HOM05D003492 ORTHO05D005115 1.2e-216 758.4 636 63.7
Actinidia13944 Actinidia chinensis HOM05D003492 ORTHO05D005115 6.1e-213 746.1 521 69.5
CDE12G0911 Ceratophyllum demersum HOM05D003492 ORTHO05D005115 2.7e-208 730.7 722 51.4
CAN.G1193.3 Capsicum annuum HOM05D003492 ORTHO05D005115 7.3e-206 722.6 514 68.9
SMO105G0008 Selaginella moellendorffii HOM05D003492 ORTHO05D005115 7.3e-206 722.6 860 47.1
FAN03G1608 Fragaria x ananassa HOM05D003492 ORTHO05D005115 9.8e-203 712.2 624 61.2
SHI03328 Sapria himalayana HOM05D003492 ORTHO05D005115 4.4e-195 686.8 511 65.9
Rhsim05G0134800 Rhododendron simsii HOM05D003492 ORTHO05D005115 5.6e-182 643.3 837 47.8
SEGI_27844 Sequoiadendron giganteum HOM05D003492 ORTHO05D005115 2.5e-174 617.8 526 56.5
CDE12G0028 Ceratophyllum demersum HOM05D003492 ORTHO05D005115 1.1e-164 585.9 1078 36.7
MCO04G065 Micromonas commoda HOM05D003492 ORTHO05D005115 2.3e-159 568.2 890 39.4
Rhsim10G0095300 Rhododendron simsii HOM05D003492 ORTHO05D005115 2.5e-150 538.1 552 56.7
SEGI_00595 Sequoiadendron giganteum HOM05D003492 ORTHO05D005115 1.9e-142 511.9 728 42.3
Cc02_g06300 Coffea canephora HOM05D003492 ORTHO05D005115 2.5e-142 511.5 391 65.7
CAN.G78.71 Capsicum annuum HOM05D003492 ORTHO05D005115 8.8e-135 486.5 322 73.0
Hund29345 Selenicereus undatus HOM05D003492 ORTHO05D005115 9.7e-134 483.0 534 50.6
CAN.G1782.1 Capsicum annuum HOM05D003492 ORTHO05D005115 9.1e-132 476.5 439 58.8
SHI03332 Sapria himalayana HOM05D003492 ORTHO05D005115 7.4e-126 456.8 431 58.2
Hund28567 Selenicereus undatus HOM05D003492 ORTHO05D005115 2.8e-125 454.9 514 49.8
Lj8A65G43 Lonicera japonica HOM05D003492 ORTHO05D005115 1.1e-121 443.0 308 70.5
SalBow5G5368 Salvia bowleyana HOM05D003492 ORTHO05D005115 5.2e-119 434.1 369 59.3
TAR623G0911 Trochodendron aralioides HOM05D003492 ORTHO05D005115 3.0e-103 381.7 313 62.9
Hma1.2p1_0235F.1_g098570 Hydrangea macrophylla HOM05D003492 ORTHO05D005115 5.4e-100 370.9 350 56.9
HPP92_012038 Vanilla planifolia HOM05D003492 ORTHO05D005115 1.6e-99 369.4 374 53.7
Cre13.g579100 Chlamydomonas reinhardtii HOM05D003492 ORTHO05D005115 1.2e-94 353.2 818 33.3
Nitab4.5_0011089g0020 Nicotiana tabacum HOM05D003492 ORTHO05D005115 5.8e-94 350.9 396 50.5
Ca_30996_v3 Cicer arietinum L. HOM05D003492 ORTHO05D005115 2.4e-84 318.9 312 54.5
Gorai.011G292700 Gossypium raimondii HOM05D003492 ORTHO05D005115 2.4e-84 318.9 234 70.1
Cfa022850 Carpinus fangiana HOM05D003492 ORTHO05D005115 5.8e-78 297.7 1013 26.7
Psat3g009720 Pisum sativum HOM05D003492 ORTHO05D005540 2.2e-77 295.8 421 42.8
Actinidia35642 Actinidia chinensis HOM05D003492 ORTHO05D005115 1.3e-74 286.6 428 43.5
Psat2g110320 Pisum sativum HOM05D003492 ORTHO05D005115 2.5e-65 255.8 331 45.6
Lj8A65T41 Lonicera japonica HOM05D003492 ORTHO05D005115 6.9e-63 247.7 164 71.3
CAN.G78.70 Capsicum annuum HOM05D003492 ORTHO05D005115 1.3e-61 243.4 186 69.4
Lsat_1_v5_gn_2_57160 Lactuca sativa HOM05D003492 ORTHO05D022499 2.0e-46 193.0 231 47.6
HPP92_012036 Vanilla planifolia HOM05D003492 ORTHO05D005115 4.6e-43 181.8 235 46.0
Psat1g148680 Pisum sativum HOM05D003492 ORTHO05D024801 1.4e-39 170.2 132 65.2
Psat7g005400 Pisum sativum HOM05D003492 ORTHO05D024801 1.4e-39 170.2 186 51.6
Thhalv10015394m.g Eutrema salsugineum HOM05D003492 ORTHO05D035223 1.3e-37 163.7 143 58.0
MBI08_g18764_MAGBIO Magnolia biondii HOM05D003492 ORTHO05D005115 2.9e-37 162.5 169 53.8
CAN.G78.73 Capsicum annuum HOM05D003492 ORTHO05D005115 1.9e-36 159.8 300 37.3
SHI03333 Sapria himalayana HOM05D003492 ORTHO05D005115 7.9e-35 154.5 178 51.1
HPP92_012037 Vanilla planifolia HOM05D003492 ORTHO05D005115 3.0e-34 152.5 154 50.6
Cc02_g06290 Coffea canephora HOM05D003492 ORTHO05D005115 5.1e-34 151.8 101 69.3
MBI12_g24829_MAGBIO Magnolia biondii HOM05D003492 ORTHO05D011152 1.1e-33 150.6 160 53.8
Duzib114G0096 Durio zibethinus HOM05D003492 ORTHO05D005115 3.1e-31 142.5 126 62.7
Lsat_1_v5_gn_4_75100 Lactuca sativa HOM05D003492 ORTHO05D016080 4.5e-30 138.7 107 62.6
SEGI_23081 Sequoiadendron giganteum HOM05D003492 ORTHO05D019467 8.5e-29 134.4 200 37.5
Lj8C65T9 Lonicera japonica HOM05D003492 ORTHO05D019467 3.2e-28 132.5 123 55.3
SHI03327 Sapria himalayana HOM05D003492 ORTHO05D000001 2.1e-27 129.8 455 25.9
SEGI_03313 Sequoiadendron giganteum HOM05D003492 ORTHO05D005115 2.1e-27 129.8 211 38.4
Rhsim10G0095400 Rhododendron simsii HOM05D003492 ORTHO05D005115 5.1e-26 125.2 103 64.1
Lsat_1_v5_gn_1_82880 Lactuca sativa HOM05D003492 ORTHO05D005115 1.1e-25 124.0 109 60.6
Psat2g065680 Pisum sativum HOM05D003492 ORTHO05D005115 4.3e-25 122.1 124 49.2
Psat4g081200 Pisum sativum HOM05D003492 ORTHO05D000696 3.4e-22 112.5 202 40.1
CAN.G78.72 Capsicum annuum HOM05D003492 ORTHO05D019467 1.3e-21 110.5 164 39.6
Psat7g097320 Pisum sativum HOM05D003492 ORTHO05D024801 4.7e-19 102.1 97 54.6
BcaB01g05927 Brassica carinata HOM05D003492 ORTHO05D016080 1.8e-18 100.1 124 50.0
Actinidia00955 Actinidia chinensis HOM05D003492 ORTHO05D019467 2.3e-18 99.8 117 48.7
SHI03336 Sapria himalayana HOM05D003492 ORTHO05D005115 2.0e-17 96.7 132 44.7
Lsat_1_v5_gn_9_80501 Lactuca sativa HOM05D003662 ORTHO05D001824 1.3e-16 94.0 144 45.8
Psat5g059840 Pisum sativum HOM05D000434 ORTHO05D007220 1.7e-16 93.6 73 58.9
SHI03335 Sapria himalayana HOM05D003492 ORTHO05D005115 1.7e-16 93.6 86 50.0
Lj8A65T40 Lonicera japonica HOM05D003492 ORTHO05D005115 4.1e-15 89.0 73 60.3
Lsat_1_v5_gn_7_99341 Lactuca sativa HOM05D003492 ORTHO05D016080 5.3e-15 88.6 86 47.7
CAN.G1193.2 Capsicum annuum HOM05D003492 ORTHO05D019467 1.5e-14 87.0 131 38.9
CAN.G78.69 Capsicum annuum HOM05D003492 ORTHO05D024801 1.0e-13 84.3 71 62.0
DCAR_011824 Daucus carota HOM05D003492 ORTHO05D005115 1.0e-13 84.3 75 54.7
GSVIVG01034775001 Vitis vinifera HOM05D003492 ORTHO05D035223 1.1e-12 80.9 54 75.9
Actinidia02211 Actinidia chinensis HOM05D003492 ORTHO05D005115 4.2e-12 79.0 86 50.0
MBI18_g01105_MAGBIO Magnolia biondii HOM05D001642 ORTHO05D010488 6.7e-10 71.6 61 65.6
Lsat_1_v5_gn_0_22080 Lactuca sativa HOM05D005223 ORTHO05D006449 2.8e-08 66.2 50 58.0
Potri.010G187201 Populus trichocarpa HOM05D003492 ORTHO05D019467 7.0e-07 61.6 63 54.0
Actinidia02220 Actinidia chinensis HOM05D003492 ORTHO05D005115 2.6e-06 59.7 38 68.4


User provided reference genes

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