Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR142G0634 Punica granatum HOM05D006173 ORTHO05D007685 2.2e-260 901.7 454 100.0
Cfa019941 Carpinus fangiana HOM05D006173 ORTHO05D007685 5.6e-203 711.1 454 76.4
Prupe.7G021600 Prunus persica HOM05D006173 ORTHO05D007685 9.9e-200 700.3 454 77.1
Eucgr.K01689 Eucalyptus grandis HOM05D006173 ORTHO05D007685 1.6e-197 693.0 457 74.8
Ciclev10011725m.g Citrus clementina HOM05D006173 ORTHO05D007685 4.6e-197 691.4 454 73.1
CiPaw.10G124100 Carya illinoinensis HOM05D006173 ORTHO05D007685 6.0e-197 691.0 454 75.3
Manes.10G077600 Manihot esculenta HOM05D006173 ORTHO05D007685 6.0e-197 691.0 452 75.7
Atru.chr1.1516 Acer truncatum HOM05D006173 ORTHO05D007685 1.6e-194 682.9 454 74.2
Potri.016G030400 Populus trichocarpa HOM05D006173 ORTHO05D007685 1.4e-193 679.9 454 72.0
TWI74G0774 Tripterygium wilfordii HOM05D006173 ORTHO05D007685 2.6e-192 675.6 456 73.5
Dinv10196 Davidia involucrata HOM05D006173 ORTHO05D007685 3.2e-190 668.7 451 73.6
Cpa.g.sc33.197 Carica papaya HOM05D006173 ORTHO05D007685 4.1e-190 668.3 457 71.1
Glyma.19G125000 Glycine max HOM05D006173 ORTHO05D007685 6.0e-189 664.5 454 73.3
Lj1g0020171 Lotus japonicus HOM05D006173 ORTHO05D007685 1.0e-188 663.7 452 71.2
Thecc.05G131000 Theobroma cacao HOM05D006173 ORTHO05D007685 8.7e-188 660.6 449 70.4
Sed0007984 Sechium edule HOM05D006173 ORTHO05D007685 9.6e-187 657.1 454 72.5
Gorai.007G351000 Gossypium raimondii HOM05D006173 ORTHO05D007685 1.2e-186 656.8 449 71.7
Gohir.D11G320800 Gossypium hirsutum HOM05D006173 ORTHO05D007685 8.1e-186 654.1 449 71.3
Glyma.03G120400 Glycine max HOM05D006173 ORTHO05D007685 1.8e-185 652.9 454 70.5
Gohir.A11G305400 Gossypium hirsutum HOM05D006173 ORTHO05D007685 1.8e-185 652.9 449 71.3
Medtr7g088540 Medicago truncatula HOM05D006173 ORTHO05D007685 1.8e-185 652.9 456 69.1
AT3G56900 Arabidopsis thaliana HOM05D006173 ORTHO05D007685 3.1e-185 652.1 456 73.0
Haze_20298 Corylus avellana HOM05D006173 ORTHO05D007685 4.0e-185 651.7 475 68.4
MELO3C009724.2 Cucumis melo HOM05D006173 ORTHO05D007685 1.2e-184 650.2 454 71.6
Carub.0005s2364 Capsella rubella HOM05D006173 ORTHO05D007685 2.6e-184 649.0 456 72.1
AL5G38300 Arabidopsis lyrata HOM05D006173 ORTHO05D007685 9.9e-184 647.1 456 72.6
CARHR167050 Cardamine hirsuta HOM05D006173 ORTHO05D007685 8.4e-183 644.0 456 72.6
CsaV3_3G039830 Cucumis sativus L. HOM05D006173 ORTHO05D007685 1.4e-182 643.3 454 69.8
Hma1.2p1_0044F.1_g026020 Hydrangea macrophylla HOM05D006173 ORTHO05D007685 2.4e-182 642.5 468 67.7
Phvul.001G116600 Phaseolus vulgaris HOM05D006173 ORTHO05D007685 1.2e-181 640.2 454 69.8
THA.LOC104814894 Tarenaya hassleriana HOM05D006173 ORTHO05D007685 3.5e-181 638.6 453 71.3
EL10Ac3g07343 Beta vulgaris HOM05D006173 ORTHO05D007685 7.8e-181 637.5 454 68.1
FvH4_7g04320 Fragaria vesca HOM05D006173 ORTHO05D007685 3.9e-180 635.2 454 70.7
Actinidia17973 Actinidia chinensis HOM05D006173 ORTHO05D007685 1.5e-179 633.3 457 68.7
Sp5g05690 Schrenkiella parvula HOM05D006173 ORTHO05D007685 1.5e-179 633.3 456 71.7
Thhalv10005968m.g Eutrema salsugineum HOM05D006173 ORTHO05D007685 2.5e-179 632.5 456 69.1
BcaC07g40109 Brassica carinata HOM05D006173 ORTHO05D007685 1.3e-178 630.2 449 68.6
Duzib106G1718 Durio zibethinus HOM05D006173 ORTHO05D007685 1.6e-178 629.8 449 68.6
Sabra16G0033900 Salix brachista HOM05D006173 ORTHO05D007685 2.1e-178 629.4 499 63.5
A09p49770 Brassica napus HOM05D006173 ORTHO05D007685 6.9e-177 624.4 455 67.3
BraA09t40430Z Brassica rapa HOM05D006173 ORTHO05D007685 6.9e-177 624.4 455 67.3
BolC8t50833H Brassica oleracea HOM05D006173 ORTHO05D007685 9.0e-177 624.0 455 67.9
ClCG10G016510 Citrullus lanatus HOM05D006173 ORTHO05D007685 9.0e-177 624.0 494 63.8
arahy.Tifrunner.gnm1.ann1.NS6SL1 Arachis hypogaea HOM05D006173 ORTHO05D007685 2.6e-176 622.5 464 66.2
C08p32150 Brassica napus HOM05D006173 ORTHO05D007685 7.6e-176 620.9 455 67.9
Migut.K00169 Erythranthe guttata HOM05D006173 ORTHO05D007685 4.9e-175 618.2 448 69.0
PGSC0003DMG400017881 Solanum tuberosum HOM05D006173 ORTHO05D007685 8.4e-175 617.5 455 67.5
BcaC07g40002 Brassica carinata HOM05D006173 ORTHO05D007685 4.2e-174 615.1 449 68.2
VMungo0331G1996 Vigna mungo HOM05D006173 ORTHO05D007685 9.3e-174 614.0 454 66.5
MSTRG.10773 Avicennia marina HOM05D006173 ORTHO05D007685 6.0e-173 611.3 447 68.9
Sopen08g011280 Solanum pennellii HOM05D006173 ORTHO05D007685 6.0e-173 611.3 455 66.8
PSO541G4485 Papaver somniferum HOM05D006173 ORTHO05D007685 7.9e-173 610.9 447 66.0
Solyc08g016801.1 Solanum lycopersicum HOM05D006173 ORTHO05D007685 1.0e-172 610.5 455 66.6
Oeu060754.2 Olea europaea HOM05D006173 ORTHO05D007685 2.1e-170 602.8 491 62.1
PSO675G1003 Papaver somniferum HOM05D006173 ORTHO05D007685 5.3e-169 598.2 447 65.3
FAN10G0117 Fragaria x ananassa HOM05D006173 ORTHO05D007685 3.4e-168 595.5 465 64.9
Aa31LG10G11760 Aethionema arabicum HOM05D006173 ORTHO05D007685 2.2e-167 592.8 530 57.5
Cc06_g22820 Coffea canephora HOM05D006173 ORTHO05D007685 6.4e-167 591.3 477 62.7
TPR.G27968 Trifolium pratense HOM05D006173 ORTHO05D007685 1.2e-165 587.0 414 70.3
arahy.Tifrunner.gnm1.ann1.TSE1DU Arachis hypogaea HOM05D006173 ORTHO05D007685 2.7e-165 585.9 458 64.0
Peaxi162Scf00937g00117 Petunia axillaris HOM05D006173 ORTHO05D007685 3.9e-164 582.0 433 67.0
ECA247G0085 Erigeron canadensis HOM05D006173 ORTHO05D007685 3.3e-163 578.9 453 64.2
CSS0033436 Camellia sinensis var. sinensis HOM05D006173 ORTHO05D007685 9.6e-163 577.4 433 69.1
MD12G1112000 Malus domestica HOM05D006173 ORTHO05D007685 9.0e-161 570.9 531 57.3
FAN01G1644 Fragaria x ananassa HOM05D006173 ORTHO05D007685 2.9e-159 565.8 558 55.0
Zm00001eb405260 Zea mays HOM05D006173 ORTHO05D007685 5.5e-158 561.6 447 60.2
Lsat_1_v5_gn_9_32341 Lactuca sativa HOM05D006173 ORTHO05D007685 2.5e-155 552.7 453 62.9
AUR62020996 Chenopodium quinoa HOM05D006173 ORTHO05D007685 2.8e-154 549.3 439 64.2
Os12g0129400 Oryza sativa ssp. japonica HOM05D006173 ORTHO05D007685 8.2e-154 547.7 451 57.9
Os11g0132700 Oryza sativa ssp. japonica HOM05D006173 ORTHO05D007685 6.9e-153 544.7 451 56.8
FAN06G1001 Fragaria x ananassa HOM05D006173 ORTHO05D007685 3.4e-152 542.3 475 60.0
SEGI_22413 Sequoiadendron giganteum HOM05D006173 ORTHO05D007685 1.1e-150 537.3 470 57.9
TAR623G0939 Trochodendron aralioides HOM05D006173 ORTHO05D007685 1.1e-150 537.3 405 68.6
Hund19061 Selenicereus undatus HOM05D006173 ORTHO05D007685 5.7e-147 525.0 433 60.5
HanXRQChr14g0457301 Helianthus annuus HOM05D006173 ORTHO05D007685 2.8e-146 522.7 451 59.9
CDE02G3082 Ceratophyllum demersum HOM05D006173 ORTHO05D007685 1.7e-143 513.5 459 58.0
vmacro07758 Vaccinium macrocarpon HOM05D006173 ORTHO05D007685 6.7e-140 501.5 486 56.0
Sc19g0007880 Simmondsia chinensis HOM05D006173 ORTHO05D007685 1.3e-138 497.3 404 62.4
Aqoxy3G01734 Aquilegia oxysepala HOM05D006173 ORTHO05D007685 1.4e-134 483.8 333 69.7
Psat3g082320 Pisum sativum HOM05D006173 ORTHO05D007685 9.4e-134 481.1 358 68.7
SalBow1G0987 Salvia bowleyana HOM05D006173 ORTHO05D007685 2.6e-131 473.0 476 52.5
Mapoly0010s0124 Marchantia polymorpha HOM05D006173 ORTHO05D007685 2.3e-124 449.9 479 48.2
AUR62018437 Chenopodium quinoa HOM05D006173 ORTHO05D007685 4.0e-124 449.1 413 58.4
SGA_v2.0_scaffold106G30556 Striga asiatica HOM05D006173 ORTHO05D007685 4.1e-121 439.1 466 52.4
MBI19_g25019_MAGBIO Magnolia biondii HOM05D006173 ORTHO05D007685 5.0e-111 405.6 396 56.1
Ca_08352_v3 Cicer arietinum L. HOM05D006173 ORTHO05D007685 4.0e-108 396.0 305 64.6
SMO116G0186 Selaginella moellendorffii HOM05D006173 ORTHO05D007685 6.8e-108 395.2 460 44.3
RhsimUnG0020600 Rhododendron simsii HOM05D006173 ORTHO05D007685 8.9e-108 394.8 429 51.5
SMO133G0039 Selaginella moellendorffii HOM05D006173 ORTHO05D007685 8.9e-108 394.8 460 44.3
VMungo1383G1641 Vigna mungo HOM05D006173 ORTHO05D007685 8.9e-108 394.8 433 52.9
Solyc08g016808.1 Solanum lycopersicum HOM05D006173 ORTHO05D007685 1.4e-105 387.5 340 60.0
Pp3c11_18220 Physcomitrium patens HOM05D006173 ORTHO05D007685 1.8e-105 387.1 463 43.4
GSVIVG01025850001 Vitis vinifera HOM05D006173 ORTHO05D007685 3.0e-95 353.2 210 78.1
Nitab4.5_0003840g0020 Nicotiana tabacum HOM05D006173 ORTHO05D007685 1.5e-91 340.9 275 60.4
Nitab4.5_0000211g0120 Nicotiana tabacum HOM05D006173 ORTHO05D007685 1.7e-90 337.4 271 62.7
MD14G1101100 Malus domestica HOM05D006173 ORTHO05D007685 5.4e-89 332.4 215 72.6
Lalb_Chr22g0358001 Lupinus albus HOM05D006173 ORTHO05D007685 6.6e-87 325.5 200 76.0
RcHm_v2.0_Chr1g0329271 Rosa chinensis HOM05D006173 ORTHO05D007685 4.3e-86 322.8 200 76.5
QL07p014498 Quercus lobata HOM05D006173 ORTHO05D007685 2.6e-83 313.5 176 81.8
ATR0307G134 Amborella trichopoda HOM05D006173 ORTHO05D007685 1.4e-81 307.8 200 69.0
Lalb_Chr22g0357991 Lupinus albus HOM05D006173 ORTHO05D007685 1.2e-80 304.7 234 63.7
RcHm_v2.0_Chr1g0329281 Rosa chinensis HOM05D006173 ORTHO05D007685 5.1e-79 299.3 234 63.7
Lj1A24G67 Lonicera japonica HOM05D006173 ORTHO05D007685 4.7e-77 292.7 266 59.4
FAN03G1994 Fragaria x ananassa HOM05D006173 ORTHO05D007685 1.1e-76 291.6 242 61.6
MD14G1101000 Malus domestica HOM05D006173 ORTHO05D007685 7.6e-75 285.4 252 59.1
SMO069G0001 Selaginella moellendorffii HOM05D006173 ORTHO05D007685 2.4e-73 280.4 228 56.1
ATR0307G100 Amborella trichopoda HOM05D006173 ORTHO05D007685 1.3e-71 274.6 234 55.1
HPP92_002170 Vanilla planifolia HOM05D006173 ORTHO05D007685 1.6e-69 267.7 168 69.0
Lj1A24G66 Lonicera japonica HOM05D006173 ORTHO05D007685 2.0e-67 260.8 151 80.1
Solyc08g036600.3 Solanum lycopersicum HOM05D006173 ORTHO05D007685 3.2e-65 253.4 215 58.6
QL07p014493 Quercus lobata HOM05D006173 ORTHO05D007685 2.0e-59 234.2 175 66.3
unitig_46.g18486 Utricularia gibba HOM05D006173 ORTHO05D007685 2.9e-58 230.3 201 56.2
HPP92_002168 Vanilla planifolia HOM05D006173 ORTHO05D007685 5.4e-57 226.1 216 54.2
CANSAT64G0701 Cannabis sativa HOM05D006173 ORTHO05D007685 7.1e-57 225.7 138 73.2
DCAR_020632 Daucus carota HOM05D002466 ORTHO05D002668 1.4e-52 211.5 197 55.8
GSVIVG01025851001 Vitis vinifera HOM05D006173 ORTHO05D007685 2.6e-51 207.2 185 57.8
CBR_g54315 Chara braunii HOM05D006173 ORTHO05D007685 3.9e-47 193.4 337 35.3
SGA_v2.0_scaffold106G30559 Striga asiatica HOM05D000268 ORTHO05D000261 2.8e-37 160.6 263 40.3
Nitab4.5_0000275g0010 Nicotiana tabacum HOM05D006173 ORTHO05D007685 1.4e-36 158.3 87 78.2
TAR623G0990 Trochodendron aralioides HOM05D006173 ORTHO05D007685 9.0e-36 155.6 97 75.3
PRCOL_00002577 Prasinoderma coloniale HOM05D006173 ORTHO05D007685 7.9e-32 142.5 274 31.8
Lj2A730T36 Lonicera japonica HOM05D006173 ORTHO05D007685 1.0e-31 142.1 240 40.8
MCO12G281 Micromonas commoda HOM05D006173 ORTHO05D007685 3.3e-30 137.1 448 27.2
Nitab4.5_0000211g0140 Nicotiana tabacum HOM05D006173 ORTHO05D007685 4.1e-28 130.2 82 74.4
Nitab4.5_0003840g0030 Nicotiana tabacum HOM05D006173 ORTHO05D007685 3.2e-25 120.6 70 75.7
Os12g0131300 Oryza sativa ssp. japonica HOM05D006173 ORTHO05D007685 1.4e-15 88.6 54 70.4
Lj2A730T35 Lonicera japonica HOM05D006173 ORTHO05D007685 2.6e-14 84.3 59 67.8
Cre10.g466300 Chlamydomonas reinhardtii HOM05D006173 ORTHO05D007685 2.8e-13 80.9 358 26.3
Lsat_1_v5_gn_4_93961 Lactuca sativa HOM05D006173 ORTHO05D007685 1.1e-12 79.0 52 69.2
Psat7g244360 Pisum sativum HOM05D000821 ORTHO05D000931 1.0e-07 62.4 50 56.0


User provided reference genes

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