Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR119G2011 Punica granatum HOM05D006465 ORTHO05D008207 6.2e-76 287.3 141 100.0
MD07G1057500 Malus domestica HOM05D006465 ORTHO05D008207 1.3e-52 209.9 141 70.2
Duzib187G1992 Durio zibethinus HOM05D006465 ORTHO05D008207 1.4e-51 206.5 118 75.4
Thecc.01G132600 Theobroma cacao HOM05D006465 ORTHO05D008207 1.8e-51 206.1 143 68.5
TWI79G1280 Tripterygium wilfordii HOM05D006465 ORTHO05D008207 2.4e-51 205.7 143 69.9
Dinv07122 Davidia involucrata HOM05D006465 ORTHO05D008207 3.1e-51 205.3 139 68.3
Potri.005G063100 Populus trichocarpa HOM05D006465 ORTHO05D008207 5.3e-51 204.5 140 68.6
THA.LOC104800074 Tarenaya hassleriana HOM05D006465 ORTHO05D008207 2.0e-50 202.6 139 69.8
Ca_16948_v3 Cicer arietinum L. HOM05D002517 ORTHO05D003040 4.5e-50 201.4 127 71.7
Ca_16968_v3 Cicer arietinum L. HOM05D006465 ORTHO05D008207 4.5e-50 201.4 127 71.7
Medtr3g096320 Medicago truncatula HOM05D006465 ORTHO05D008207 4.5e-50 201.4 112 78.6
Manes.03G123050 Manihot esculenta HOM05D006465 ORTHO05D008207 7.6e-50 200.7 116 76.7
Prupe.4G271100 Prunus persica HOM05D006465 ORTHO05D008207 1.3e-49 199.9 112 78.6
Ciclev10002814m.g Citrus clementina HOM05D006465 ORTHO05D008207 2.2e-49 199.1 142 66.2
Psat5g062320 Pisum sativum HOM05D006465 ORTHO05D008207 2.2e-49 199.1 141 66.0
TWI75G0808 Tripterygium wilfordii HOM05D006465 ORTHO05D008207 2.2e-49 199.1 138 70.3
Glyma.06G153700 Glycine max HOM05D006465 ORTHO05D008207 4.9e-49 198.0 118 76.3
TAR381G0246 Trochodendron aralioides HOM05D006465 ORTHO05D008207 8.4e-49 197.2 112 78.6
Sabra05G0052300 Salix brachista HOM05D006465 ORTHO05D008207 1.4e-48 196.4 116 73.3
TPR.G28231 Trifolium pratense HOM05D006465 ORTHO05D008207 1.9e-48 196.1 141 66.0
Ah.02g121490 Amaranthus hybridus HOM05D006465 ORTHO05D008207 3.2e-48 195.3 132 66.7
RcHm_v2.0_Chr6g0264391 Rosa chinensis HOM05D006465 ORTHO05D008207 4.2e-48 194.9 131 68.7
Hund23271 Selenicereus undatus HOM05D006465 ORTHO05D008207 4.2e-48 194.9 108 79.6
BolC3t12987H Brassica oleracea HOM05D006465 ORTHO05D008207 5.5e-48 194.5 139 66.9
BraA10t44842Z Brassica rapa HOM05D006465 ORTHO05D008207 5.5e-48 194.5 141 65.2
CANSAT01G2296 Cannabis sativa HOM05D006465 ORTHO05D008207 7.1e-48 194.1 118 75.4
CARHR204090 Cardamine hirsuta HOM05D006465 ORTHO05D008207 7.1e-48 194.1 144 66.0
Hma1.2p1_0476F.1_g160840 Hydrangea macrophylla HOM05D006465 ORTHO05D008207 7.1e-48 194.1 110 78.2
Lj4A839G53 Lonicera japonica HOM05D006465 ORTHO05D008207 7.1e-48 194.1 133 64.7
Lalb_Chr08g0238351 Lupinus albus HOM05D006465 ORTHO05D008207 7.1e-48 194.1 129 70.5
A03p04100 Brassica napus HOM05D006465 ORTHO05D008207 1.2e-47 193.4 137 67.2
A10p27930 Brassica napus HOM05D006465 ORTHO05D008207 1.2e-47 193.4 141 65.2
C03p04560 Brassica napus HOM05D006465 ORTHO05D008207 1.2e-47 193.4 139 65.5
BraA03t09753Z Brassica rapa HOM05D006465 ORTHO05D008207 1.2e-47 193.4 137 67.2
Atru.chr4.901 Acer truncatum HOM05D006465 ORTHO05D008207 1.6e-47 193.0 141 66.0
BcaB08g37219 Brassica carinata HOM05D006465 ORTHO05D008207 1.6e-47 193.0 143 65.0
Phvul.009G150900 Phaseolus vulgaris HOM05D006465 ORTHO05D008207 1.6e-47 193.0 112 76.8
Sed0005537 Sechium edule HOM05D006465 ORTHO05D008207 2.1e-47 192.6 114 74.6
arahy.Tifrunner.gnm1.ann1.X6LXMM Arachis hypogaea HOM05D006465 ORTHO05D008207 2.7e-47 192.2 128 68.0
Glyma.04G212600 Glycine max HOM05D006465 ORTHO05D008207 2.7e-47 192.2 118 74.6
Gohir.A05G384500 Gossypium hirsutum HOM05D005188 ORTHO05D006153 2.7e-47 192.2 114 73.7
Sc07g0001830 Simmondsia chinensis HOM05D006465 ORTHO05D008207 2.7e-47 192.2 108 76.9
Aa31LG3G17710 Aethionema arabicum HOM05D003132 ORTHO05D003736 3.5e-47 191.8 134 65.7
Dinv24364 Davidia involucrata HOM05D006465 ORTHO05D008207 3.5e-47 191.8 109 77.1
AUR62003565 Chenopodium quinoa HOM05D006465 ORTHO05D008207 4.6e-47 191.4 140 63.6
Thhalv10014951m.g Eutrema salsugineum HOM05D006465 ORTHO05D008207 4.6e-47 191.4 144 63.2
Lj1g0025116 Lotus japonicus HOM05D006465 ORTHO05D008207 6.0e-47 191.0 141 62.4
AUR62017880 Chenopodium quinoa HOM05D006465 ORTHO05D008207 7.9e-47 190.7 127 67.7
FvH4_2g08820 Fragaria vesca HOM05D006465 ORTHO05D008207 7.9e-47 190.7 133 67.7
FAN10G0435 Fragaria x ananassa HOM05D006465 ORTHO05D008207 7.9e-47 190.7 133 67.7
FAN15G0521 Fragaria x ananassa HOM05D006465 ORTHO05D008207 7.9e-47 190.7 133 67.7
Gohir.D04G031000 Gossypium hirsutum HOM05D006465 ORTHO05D008207 7.9e-47 190.7 114 71.9
Gorai.012G035200 Gossypium raimondii HOM05D005188 ORTHO05D006153 7.9e-47 190.7 114 71.9
Sp6g34010 Schrenkiella parvula HOM05D006465 ORTHO05D008207 1.0e-46 190.3 140 63.6
CiPaw.04G082200 Carya illinoinensis HOM05D006465 ORTHO05D008207 1.3e-46 189.9 112 73.2
GSVIVG01026483001 Vitis vinifera HOM05D006465 ORTHO05D008207 1.8e-46 189.5 112 74.1
AL6G19700 Arabidopsis lyrata HOM05D006465 ORTHO05D008207 5.1e-46 188.0 144 66.7
Nn5g28548 Nelumbo nucifera HOM05D006465 ORTHO05D008207 5.1e-46 188.0 112 75.0
AT5G09310 Arabidopsis thaliana HOM05D006465 ORTHO05D008207 6.7e-46 187.6 144 67.4
CsaV3_2G018330 Cucumis sativus L. HOM05D006465 ORTHO05D008207 6.7e-46 187.6 141 66.0
Carub.0006s0786 Capsella rubella HOM05D006465 ORTHO05D008207 1.1e-45 186.8 144 65.3
Aqoxy5G02229 Aquilegia oxysepala HOM05D006465 ORTHO05D000054 1.5e-45 186.4 135 64.4
Haze_25235 Corylus avellana HOM05D006465 ORTHO05D008207 1.9e-45 186.0 113 72.6
arahy.Tifrunner.gnm1.ann1.Q2CXKS Arachis hypogaea HOM05D006465 ORTHO05D008207 2.5e-45 185.7 144 60.4
CSS0043698 Camellia sinensis var. sinensis HOM05D006465 ORTHO05D008207 3.3e-45 185.3 111 71.2
EL10Ac6g15303 Beta vulgaris HOM05D006465 ORTHO05D008207 4.3e-45 184.9 116 69.8
Actinidia06618 Actinidia chinensis HOM05D006465 ORTHO05D008207 7.4e-45 184.1 110 70.9
ClCG02G000500 Citrullus lanatus HOM05D006465 ORTHO05D008207 7.4e-45 184.1 141 66.0
Cc07_g18520 Coffea canephora HOM05D006465 ORTHO05D008207 7.4e-45 184.1 110 73.6
vmacro12798 Vaccinium macrocarpon HOM05D006465 ORTHO05D008207 9.6e-45 183.7 110 71.8
TAR625G1289 Trochodendron aralioides HOM05D006465 ORTHO05D008207 1.6e-44 183.0 109 74.3
Lsat_1_v5_gn_9_25981 Lactuca sativa HOM05D006465 ORTHO05D008207 2.1e-44 182.6 108 73.1
HanXRQChr15g0491331 Helianthus annuus HOM05D006465 ORTHO05D008207 1.1e-43 180.3 109 72.5
CDE04G1235 Ceratophyllum demersum HOM05D006465 ORTHO05D008207 2.4e-43 179.1 118 66.1
Peaxi162Scf00270g01115 Petunia axillaris HOM05D006465 ORTHO05D008207 3.1e-43 178.7 110 69.1
VMungo1309G0274 Vigna mungo HOM05D006465 ORTHO05D008207 3.1e-43 178.7 110 71.8
Sopen06g005870 Solanum pennellii HOM05D006465 ORTHO05D008207 9.0e-43 177.2 138 60.1
Nitab4.5_0000181g0060 Nicotiana tabacum HOM05D006465 ORTHO05D008207 1.5e-42 176.4 110 70.9
PSO017G4081 Papaver somniferum HOM05D006465 ORTHO05D008207 1.5e-42 176.4 119 68.1
PGSC0003DMG400030138 Solanum tuberosum HOM05D006465 ORTHO05D008207 5.8e-42 174.5 110 69.1
PSO170G5905 Papaver somniferum HOM05D006465 ORTHO05D008207 7.6e-42 174.1 119 66.4
unitig_88.g27767 Utricularia gibba HOM05D006465 ORTHO05D008207 7.6e-42 174.1 111 70.3
Migut.L00880 Erythranthe guttata HOM05D006465 ORTHO05D008207 1.0e-41 173.7 154 54.5
CAN.G934.1 Capsicum annuum HOM05D006465 ORTHO05D008207 1.3e-41 173.3 110 69.1
QL10p043584 Quercus lobata HOM05D006465 ORTHO05D008207 1.3e-41 173.3 171 52.6
Migut.L00965 Erythranthe guttata HOM05D006465 ORTHO05D008207 4.9e-41 171.4 154 54.5
HPP92_019397 Vanilla planifolia HOM05D006465 ORTHO05D008207 6.5e-41 171.0 112 71.4
ECA247G0944 Erigeron canadensis HOM05D006465 ORTHO05D008207 1.1e-40 170.2 108 68.5
Oeu004242.1 Olea europaea HOM05D006465 ORTHO05D008207 7.1e-40 167.5 109 67.9
MELO3C023238.2 Cucumis melo HOM05D006465 ORTHO05D008207 9.3e-40 167.2 169 56.2
MSTRG.3605 Avicennia marina HOM05D006465 ORTHO05D008207 1.6e-39 166.4 110 66.4
FAN24G0187 Fragaria x ananassa HOM05D006465 ORTHO05D008207 3.5e-39 165.2 119 65.5
Hund04414 Selenicereus undatus HOM05D006465 ORTHO05D008207 6.0e-39 164.5 161 52.8
DCAR_014336 Daucus carota HOM05D006465 ORTHO05D008207 1.3e-38 163.3 108 64.8
ATR0138G005 Amborella trichopoda HOM05D006465 ORTHO05D008207 3.0e-38 162.2 108 67.6
SalBow7G2903 Salvia bowleyana HOM05D006465 ORTHO05D008207 3.0e-38 162.2 134 57.5
SGA_v2.0_scaffold19G08773 Striga asiatica HOM05D006465 ORTHO05D008207 3.0e-38 162.2 111 64.0
Oeu050125.1 Olea europaea HOM05D006465 ORTHO05D008207 6.7e-38 161.0 113 65.5
FvH4_3g04510 Fragaria vesca HOM05D006465 ORTHO05D008207 2.1e-36 156.0 95 75.8
FAN11G3155 Fragaria x ananassa HOM05D006465 ORTHO05D008207 3.7e-36 155.2 95 75.8
Os01g0960000 Oryza sativa ssp. japonica HOM05D006465 ORTHO05D008207 3.4e-34 148.7 116 59.5
AagrBONN_evm.TU.Sc2ySwM_117.2181 Anthoceros agrestis HOM05D006465 ORTHO05D008207 2.2e-33 146.0 102 61.8
Zm00001eb362550 Zea mays HOM05D006465 ORTHO05D008207 1.4e-32 143.3 113 58.4
Mapoly0113s0017 Marchantia polymorpha HOM05D006465 ORTHO05D008207 1.2e-31 140.2 111 55.9
Pp3c15_3010 Physcomitrium patens HOM05D006465 ORTHO05D008207 2.8e-28 129.0 112 54.5
MD02G1262600 Malus domestica HOM05D006465 ORTHO05D008207 3.4e-26 122.1 91 63.7
SMO367G0154 Selaginella moellendorffii HOM05D006465 ORTHO05D008207 2.5e-24 115.9 108 50.9
SEGI_17702 Sequoiadendron giganteum HOM05D006465 ORTHO05D008207 3.3e-21 105.5 96 51.0
Potri.007G106200 Populus trichocarpa HOM05D006465 ORTHO05D008207 4.4e-21 105.1 89 59.6
Solyc06g016760.3 Solanum lycopersicum HOM05D006465 ORTHO05D008207 9.1e-19 97.4 85 55.3
CDE12G0205 Ceratophyllum demersum HOM05D006465 ORTHO05D008207 1.5e-18 96.7 60 65.0
Eucgr.I00202 Eucalyptus grandis HOM05D006465 ORTHO05D008207 1.4e-16 90.1 50 76.0
CBR_g29852 Chara braunii HOM05D006465 ORTHO05D008207 1.2e-15 87.0 114 41.2
Cc00_g31500 Coffea canephora HOM05D006465 ORTHO05D008207 6.1e-15 84.7 49 77.6
Lj4A838T21 Lonicera japonica HOM05D006465 ORTHO05D008207 1.8e-14 83.2 51 74.5
Cc00_g19040 Coffea canephora HOM05D006465 ORTHO05D008207 6.7e-14 81.3 48 77.1
Lalb_Chr11g0068481 Lupinus albus HOM05D006465 ORTHO05D008207 1.1e-13 80.5 53 67.9
vmacro20733 Vaccinium macrocarpon HOM05D006465 ORTHO05D008207 1.5e-13 80.1 51 68.6
Rhsim10G0133300 Rhododendron simsii HOM05D006465 ORTHO05D008207 2.0e-13 79.7 51 66.7
Lalb_Chr11g0068471 Lupinus albus HOM05D006465 ORTHO05D008207 3.3e-13 79.0 45 73.3
BolC9t59563H Brassica oleracea HOM05D006465 ORTHO05D008207 5.3e-11 71.6 45 68.9
PRCOL_00001485 Prasinoderma coloniale HOM05D006465 ORTHO05D008207 3.5e-10 68.9 94 42.6
Cre07.g323050 Chlamydomonas reinhardtii HOM05D006465 ORTHO05D008207 1.6e-07 60.1 74 36.5


User provided reference genes

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