Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR119G2008 Punica granatum HOM05D004012 ORTHO05D004752 5.3e-251 870.5 439 100.0
Eucgr.I00032 Eucalyptus grandis HOM05D004012 ORTHO05D004752 1.2e-202 709.9 435 80.9
CiPaw.15G186100 Carya illinoinensis HOM05D004012 ORTHO05D004752 3.3e-176 622.1 436 70.4
Eucgr.I00085 Eucalyptus grandis HOM05D004012 ORTHO05D004752 7.3e-176 620.9 388 78.6
Manes.13G154600 Manihot esculenta HOM05D004012 ORTHO05D004752 1.8e-174 616.3 428 71.3
RcHm_v2.0_Chr7g0205341 Rosa chinensis HOM05D004012 ORTHO05D004752 9.9e-173 610.5 436 70.0
Atru.chr3.1437 Acer truncatum HOM05D004012 ORTHO05D004752 6.4e-172 607.8 431 68.7
Hma1.2p1_3052F.1_g332140 Hydrangea macrophylla HOM05D004012 ORTHO05D004752 8.4e-172 607.4 436 70.0
CSS0025733 Camellia sinensis var. sinensis HOM05D004012 ORTHO05D004752 1.1e-171 607.1 436 68.6
Dinv19127 Davidia involucrata HOM05D004012 ORTHO05D004752 2.4e-171 605.9 438 70.3
Hma1.2p1_0513F.1_g169610 Hydrangea macrophylla HOM05D004012 ORTHO05D004752 7.1e-171 604.4 436 69.7
Lj6g0017875 Lotus japonicus HOM05D004012 ORTHO05D004752 7.1e-171 604.4 436 67.7
CANSAT54G0087 Cannabis sativa HOM05D004012 ORTHO05D004752 4.6e-170 601.7 435 69.0
GSVIVG01000257001 Vitis vinifera HOM05D004012 ORTHO05D004752 1.3e-169 600.1 409 71.6
FAN18G2241 Fragaria x ananassa HOM05D004012 ORTHO05D004752 2.3e-169 599.4 431 69.1
FvH4_5g20280 Fragaria vesca HOM05D004012 ORTHO05D004752 1.1e-168 597.0 431 68.9
Gohir.D10G106700 Gossypium hirsutum HOM05D004012 ORTHO05D004752 3.3e-168 595.5 435 68.0
Gorai.011G116800 Gossypium raimondii HOM05D004012 ORTHO05D004752 3.3e-168 595.5 435 68.0
Lalb_Chr01g0020921 Lupinus albus HOM05D004012 ORTHO05D004752 2.8e-167 592.4 437 66.8
Gohir.A10G084900 Gossypium hirsutum HOM05D004012 ORTHO05D004752 3.7e-167 592.0 435 67.6
Dinv26833 Davidia involucrata HOM05D004012 ORTHO05D004752 6.2e-167 591.3 442 67.6
MELO3C023211.2 Cucumis melo HOM05D004012 ORTHO05D004752 1.1e-166 590.5 432 67.6
FAN04G0350 Fragaria x ananassa HOM05D004012 ORTHO05D004752 1.1e-166 590.5 431 68.4
CsaV3_2G019600 Cucumis sativus L. HOM05D004012 ORTHO05D004752 3.1e-166 589.0 432 67.4
Lalb_Chr03g0037441 Lupinus albus HOM05D004012 ORTHO05D004752 3.1e-166 589.0 437 67.3
FAN08G1522 Fragaria x ananassa HOM05D004012 ORTHO05D004752 4.0e-166 588.6 431 68.0
Glyma.02G005000 Glycine max HOM05D004012 ORTHO05D004752 4.0e-166 588.6 436 67.0
Potri.017G122600 Populus trichocarpa HOM05D004012 ORTHO05D004752 4.0e-166 588.6 428 67.1
Prupe.5G058000 Prunus persica HOM05D004012 ORTHO05D004752 5.3e-166 588.2 431 68.0
AUR62000581 Chenopodium quinoa HOM05D004012 ORTHO05D004752 9.0e-166 587.4 432 66.2
Sopen04g017040 Solanum pennellii HOM05D004012 ORTHO05D004752 4.5e-165 585.1 429 69.0
TAR628G1247 Trochodendron aralioides HOM05D004012 ORTHO05D004752 4.5e-165 585.1 466 63.5
Phvul.007G277800 Phaseolus vulgaris HOM05D004012 ORTHO05D004752 5.8e-165 584.7 436 66.3
AUR62006937 Chenopodium quinoa HOM05D004012 ORTHO05D004752 9.9e-165 583.9 432 65.7
CAN.G10.8 Capsicum annuum HOM05D004012 ORTHO05D004752 1.7e-164 583.2 429 69.0
Sc16g0009950 Simmondsia chinensis HOM05D004012 ORTHO05D004752 1.7e-164 583.2 432 65.7
Nn5g27391 Nelumbo nucifera HOM05D004012 ORTHO05D004752 2.9e-164 582.4 436 65.8
Hund07194 Selenicereus undatus HOM05D004012 ORTHO05D004752 2.9e-164 582.4 432 65.7
Lalb_Chr19g0127941 Lupinus albus HOM05D004012 ORTHO05D004752 3.8e-164 582.0 437 67.0
MD06G1047700 Malus domestica HOM05D004012 ORTHO05D004752 1.1e-163 580.5 431 68.0
ClCG02G000230 Citrullus lanatus HOM05D004012 ORTHO05D004752 1.4e-163 580.1 444 65.3
MSTRG.9397 Avicennia marina HOM05D004012 ORTHO05D004752 3.2e-163 578.9 440 65.0
VMungo0720G3057 Vigna mungo HOM05D004012 ORTHO05D004752 1.2e-162 577.0 436 65.1
MD04G1052500 Malus domestica HOM05D004012 ORTHO05D004752 1.6e-162 576.6 431 66.8
Rhsim01G0147700 Rhododendron simsii HOM05D004012 ORTHO05D004752 3.5e-162 575.5 461 64.0
SalBow1G0131 Salvia bowleyana HOM05D004012 ORTHO05D004752 2.3e-161 572.8 431 66.4
Migut.D01135 Erythranthe guttata HOM05D004012 ORTHO05D004752 4.8e-159 565.1 427 65.3
Aqoxy5G01862 Aquilegia oxysepala HOM05D004012 ORTHO05D004752 5.3e-158 561.6 436 64.2
MSTRG.4671 Avicennia marina HOM05D004012 ORTHO05D004752 2.0e-157 559.7 431 64.5
ECA238G2948 Erigeron canadensis HOM05D004012 ORTHO05D004752 2.0e-157 559.7 437 63.2
Oeu034405.1 Olea europaea HOM05D004012 ORTHO05D004752 2.0e-157 559.7 439 65.1
TWI31G0701 Tripterygium wilfordii HOM05D004012 ORTHO05D004752 2.0e-157 559.7 428 65.7
Ca_12160_v3 Cicer arietinum L. HOM05D004012 ORTHO05D004752 3.4e-157 558.9 436 63.5
MBI10_g20270_MAGBIO Magnolia biondii HOM05D004012 ORTHO05D004752 1.0e-156 557.4 436 63.5
Medtr1g041405 Medicago truncatula HOM05D004012 ORTHO05D004752 6.5e-156 554.7 455 61.1
Sed0016932 Sechium edule HOM05D004012 ORTHO05D004752 8.4e-156 554.3 431 65.0
HanXRQChr13g0402671 Helianthus annuus HOM05D004012 ORTHO05D004752 3.2e-155 552.4 438 62.3
Psat6g104000 Pisum sativum HOM05D004012 ORTHO05D004752 7.9e-154 547.7 456 61.0
arahy.Tifrunner.gnm1.ann1.5Q2P9B Arachis hypogaea HOM05D004012 ORTHO05D004752 3.9e-153 545.4 400 68.0
arahy.Tifrunner.gnm1.ann1.EZQ64B Arachis hypogaea HOM05D004012 ORTHO05D004752 3.9e-153 545.4 400 68.0
TPR.G25177 Trifolium pratense HOM05D004012 ORTHO05D004752 2.2e-151 539.7 450 60.9
EL10Ac4g09708 Beta vulgaris HOM05D004012 ORTHO05D004752 1.1e-150 537.3 434 62.2
Cc07_g20580 Coffea canephora HOM05D004012 ORTHO05D004752 1.1e-150 537.3 387 68.2
Glyma.10G003500 Glycine max HOM05D004012 ORTHO05D004752 1.8e-150 536.6 404 65.6
Thhalv10013606m.g Eutrema salsugineum HOM05D004012 ORTHO05D004752 4.1e-150 535.4 429 60.4
CDE05G2224 Ceratophyllum demersum HOM05D004012 ORTHO05D004752 9.0e-150 534.3 432 60.9
Cc07_g20480 Coffea canephora HOM05D004012 ORTHO05D004752 1.2e-149 533.9 389 67.6
Aa31LG11G11210 Aethionema arabicum HOM05D004012 ORTHO05D004752 1.9e-147 526.6 451 57.0
Potri.004G092400 Populus trichocarpa HOM05D004012 ORTHO05D004752 1.9e-147 526.6 397 65.7
Sp6g25900 Schrenkiella parvula HOM05D004012 ORTHO05D004752 2.5e-147 526.2 433 58.7
BcaB08g36680 Brassica carinata HOM05D004012 ORTHO05D004752 4.2e-147 525.4 432 59.5
unitig_0.g354 Utricularia gibba HOM05D004012 ORTHO05D004752 1.6e-146 523.5 431 62.4
Carub.0006s1668 Capsella rubella HOM05D004012 ORTHO05D004752 1.8e-145 520.0 434 58.1
DCAR_009624 Daucus carota HOM05D004012 ORTHO05D004752 5.1e-145 518.5 436 60.6
Duzib147G1077 Durio zibethinus HOM05D004012 ORTHO05D004752 2.0e-144 516.5 356 71.9
C09p58260 Brassica napus HOM05D004012 ORTHO05D004752 4.3e-144 515.4 446 57.4
BolC9t58691H Brassica oleracea HOM05D004012 ORTHO05D004752 2.2e-143 513.1 448 56.9
BraA03t10211Z Brassica rapa HOM05D004012 ORTHO05D004752 2.2e-143 513.1 454 56.6
vmacro21003 Vaccinium macrocarpon HOM05D004012 ORTHO05D004752 2.8e-143 512.7 415 62.9
CARHR194600 Cardamine hirsuta HOM05D004012 ORTHO05D004752 6.3e-143 511.5 440 57.7
ATR1089G159 Amborella trichopoda HOM05D004012 ORTHO05D004752 1.1e-142 510.8 434 59.4
A10p21150 Brassica napus HOM05D004012 ORTHO05D004752 1.4e-142 510.4 452 56.4
BraA10t44178Z Brassica rapa HOM05D004012 ORTHO05D004752 1.8e-142 510.0 453 56.3
AT5G18420 Arabidopsis thaliana HOM05D004012 ORTHO05D004752 3.1e-142 509.2 433 57.0
Sabra04G0062100 Salix brachista HOM05D004012 ORTHO05D004752 4.1e-142 508.8 438 59.4
BolC3t13514H Brassica oleracea HOM05D004012 ORTHO05D004752 9.1e-142 507.7 454 55.9
THA.LOC104806688 Tarenaya hassleriana HOM05D004012 ORTHO05D004752 1.2e-141 507.3 430 59.5
TWI79G0644 Tripterygium wilfordii HOM05D004012 ORTHO05D004752 4.2e-139 498.8 428 61.2
Lsat_1_v5_gn_0_9061 Lactuca sativa HOM05D004012 ORTHO05D004752 6.1e-138 495.0 426 58.9
CDE05G3168 Ceratophyllum demersum HOM05D004012 ORTHO05D004752 8.8e-137 491.1 438 57.3
Thecc.01G145600 Theobroma cacao HOM05D004012 ORTHO05D004752 8.8e-137 491.1 377 63.4
TAR376G0099 Trochodendron aralioides HOM05D004012 ORTHO05D004752 1.1e-136 490.7 381 64.8
AL6G29670 Arabidopsis lyrata HOM05D004012 ORTHO05D004752 1.3e-135 487.3 382 61.0
Ciclev10005092m.g Citrus clementina HOM05D004012 ORTHO05D004752 8.2e-135 484.6 393 60.8
SGA_v2.0_scaffold14G07064 Striga asiatica HOM05D004012 ORTHO05D004752 8.2e-135 484.6 440 58.0
PSO210G3799 Papaver somniferum HOM05D004012 ORTHO05D004752 1.8e-134 483.4 436 58.9
Sabra17G0101400 Salix brachista HOM05D004012 ORTHO05D004752 1.2e-133 480.7 386 62.2
PSO761G0211 Papaver somniferum HOM05D004012 ORTHO05D004752 3.5e-133 479.2 436 58.7
Sabra17G0104000 Salix brachista HOM05D004012 ORTHO05D004752 4.5e-133 478.8 386 61.9
Duzib187G0370 Durio zibethinus HOM05D004012 ORTHO05D004752 1.0e-132 477.6 318 72.0
Duzib264G1318 Durio zibethinus HOM05D004012 ORTHO05D004752 6.5e-132 474.9 364 65.4
MBI06_g32154_MAGBIO Magnolia biondii HOM05D004012 ORTHO05D004752 6.7e-129 464.9 423 56.5
Actinidia12239 Actinidia chinensis HOM05D004012 ORTHO05D004752 2.0e-128 463.4 307 71.3
C03p10330 Brassica napus HOM05D004012 ORTHO05D004752 4.4e-128 462.2 428 54.4
Actinidia30855 Actinidia chinensis HOM05D004012 ORTHO05D004752 5.7e-128 461.8 434 56.9
Mapoly0005s0018 Marchantia polymorpha HOM05D004012 ORTHO05D004752 1.3e-127 460.7 423 55.8
Lsat_1_v5_gn_5_118080 Lactuca sativa HOM05D004012 ORTHO05D004752 3.1e-126 456.1 429 56.4
HPP92_005635 Vanilla planifolia HOM05D004012 ORTHO05D004752 3.1e-126 456.1 349 64.2
Os11g0240900 Oryza sativa ssp. japonica HOM05D004012 ORTHO05D004752 2.0e-125 453.4 437 54.7
Actinidia14359 Actinidia chinensis HOM05D004012 ORTHO05D004752 1.7e-124 450.3 467 53.1
Pp3c24_6950 Physcomitrium patens HOM05D004012 ORTHO05D004752 6.1e-122 441.8 432 53.0
Pp3c20_12330 Physcomitrium patens HOM05D004012 ORTHO05D004752 8.8e-121 438.0 434 53.2
Lj4A823T24 Lonicera japonica HOM05D004012 ORTHO05D004752 1.2e-120 437.6 300 69.7
Ah.02g118090 Amaranthus hybridus HOM05D004012 ORTHO05D004752 5.3e-118 428.7 385 57.1
Zm00001eb112220 Zea mays HOM05D004012 ORTHO05D004752 2.0e-117 426.8 441 53.7
FAN13G1241 Fragaria x ananassa HOM05D004012 ORTHO05D004752 2.2e-116 423.3 328 63.7
CBR_g22449 Chara braunii HOM05D004012 ORTHO05D004752 3.8e-116 422.5 432 53.7
Zm00001eb167940 Zea mays HOM05D004012 ORTHO05D004752 3.6e-114 416.0 432 53.7
Pp3c23_1780 Physcomitrium patens HOM05D004012 ORTHO05D004752 3.1e-110 402.9 349 57.6
DCAR_019944 Daucus carota HOM05D004012 ORTHO05D004752 2.4e-94 350.1 322 56.5
BcaC04g18693 Brassica carinata HOM05D004012 ORTHO05D004752 7.8e-93 345.1 436 47.7
Nitab4.5_0000064g0090 Nicotiana tabacum HOM05D004012 ORTHO05D004752 2.8e-90 336.7 275 62.5
PGSC0003DMG401004242 Solanum tuberosum HOM05D004012 ORTHO05D004752 3.6e-90 336.3 275 63.6
Solyc04g024500.3 Solanum lycopersicum HOM05D004012 ORTHO05D004752 4.7e-90 335.9 275 62.9
Peaxi162Scf00621g00412 Petunia axillaris HOM05D004012 ORTHO05D004752 1.8e-89 334.0 281 61.2
SMO196G0070 Selaginella moellendorffii HOM05D004012 ORTHO05D004752 1.5e-88 330.9 280 59.3
Oeu036288.1 Olea europaea HOM05D004012 ORTHO05D004752 8.3e-87 325.1 288 58.7
Cc07_g20540 Coffea canephora HOM05D004012 ORTHO05D004752 9.2e-86 321.6 350 48.3
Nitab4.5_0005261g0010 Nicotiana tabacum HOM05D004012 ORTHO05D004752 6.2e-82 308.9 275 59.6
AagrBONN_evm.TU.Sc2ySwM_228.2915 Anthoceros agrestis HOM05D004012 ORTHO05D004752 5.8e-80 302.4 322 46.9
Cpa.g.sc138.55 Carica papaya HOM05D004012 ORTHO05D004752 2.2e-79 300.4 230 62.2
Ah.06g188310 Amaranthus hybridus HOM05D004012 ORTHO05D004752 2.8e-74 283.5 216 63.9
Lju41A56G29 Lonicera japonica HOM05D004012 ORTHO05D004752 3.2e-70 270.0 343 44.9
QL10p034897 Quercus lobata HOM05D004012 ORTHO05D004752 7.8e-69 265.4 163 74.8
Haze_19373 Corylus avellana HOM05D004012 ORTHO05D004752 2.1e-66 257.3 156 80.8
Nitab4.5_0000064g0100 Nicotiana tabacum HOM05D004012 ORTHO05D004752 6.2e-66 255.8 176 72.2
Solyc04g024510.3 Solanum lycopersicum HOM05D004012 ORTHO05D004752 1.4e-65 254.6 156 79.5
Nitab4.5_0005261g0020 Nicotiana tabacum HOM05D004012 ORTHO05D004752 1.8e-65 254.2 155 79.4
Peaxi162Scf00621g00413 Petunia axillaris HOM05D004012 ORTHO05D004752 7.6e-64 248.8 154 78.6
SEGI_14103 Sequoiadendron giganteum HOM05D004012 ORTHO05D004752 1.7e-60 237.7 155 76.1
Zm00001eb138450 Zea mays HOM05D004012 ORTHO05D004752 1.7e-60 237.7 275 47.3
HPP92_005645 Vanilla planifolia HOM05D004012 ORTHO05D004752 1.2e-56 224.9 145 75.9
Cre17.g726800 Chlamydomonas reinhardtii HOM05D004012 ORTHO05D004752 4.5e-56 223.0 508 34.8
THA.LOC104799828 Tarenaya hassleriana HOM05D004012 ORTHO05D004752 4.9e-55 219.5 183 61.7
Os12g0197900 Oryza sativa ssp. japonica HOM05D004012 ORTHO05D004752 4.6e-53 213.0 140 74.3
PGSC0003DMG402004242 Solanum tuberosum HOM05D004012 ORTHO05D004752 7.9e-53 212.2 132 79.5
HPP92_005646 Vanilla planifolia HOM05D004012 ORTHO05D004752 9.6e-51 205.3 230 47.8
BcaNung06869 Brassica carinata HOM05D004012 ORTHO05D004752 2.5e-46 190.7 131 76.3
SHI03102 Sapria himalayana HOM05D004012 ORTHO05D004752 7.1e-46 189.1 154 57.1
Lsat_1_v5_gn_2_19540 Lactuca sativa HOM05D004012 ORTHO05D004752 1.2e-45 188.3 182 52.7
DCAR_015558 Daucus carota HOM05D004012 ORTHO05D004752 2.1e-45 187.6 122 74.6
TPR.G34339 Trifolium pratense HOM05D004012 ORTHO05D004752 2.6e-40 170.6 470 30.4
Cpa.g.sc138.54 Carica papaya HOM05D004012 ORTHO05D004752 1.7e-39 167.9 98 84.7
SHI03103 Sapria himalayana HOM05D004012 ORTHO05D004752 1.4e-38 164.9 183 52.5
HPP92_005679 Vanilla planifolia HOM05D004012 ORTHO05D004752 1.6e-37 161.4 309 36.2
QL10p034885 Quercus lobata HOM05D004012 ORTHO05D000004 1.3e-36 158.3 106 73.6
Haze_27454 Corylus avellana HOM05D004012 ORTHO05D004752 1.5e-32 144.8 129 57.4
Lju41A56T30 Lonicera japonica HOM05D004012 ORTHO05D004752 1.0e-28 132.1 146 51.4
QL10p034900 Quercus lobata HOM05D004012 ORTHO05D004752 9.1e-25 119.0 120 51.7
MCO14G229 Micromonas commoda HOM05D004012 ORTHO05D004752 3.4e-24 117.1 215 36.3
A03p08840 Brassica napus HOM05D004012 ORTHO05D004752 2.7e-21 107.5 68 79.4
Ciclev10006318m.g Citrus clementina HOM05D004012 ORTHO05D004752 1.7e-18 98.2 58 84.5
PRCOL_00001851 Prasinoderma coloniale HOM05D004012 ORTHO05D004752 2.8e-18 97.4 274 31.0
Oeu046377.1 Olea europaea HOM05D004012 ORTHO05D004752 9.1e-17 92.4 55 85.5
Actinidia12240 Actinidia chinensis HOM05D004012 ORTHO05D004752 2.1e-13 81.3 99 43.4
PSO761G0569 Papaver somniferum HOM05D004012 ORTHO05D004752 7.5e-11 72.8 54 63.0
Cc07_g20530 Coffea canephora HOM05D004012 ORTHO05D004752 1.5e-06 58.5 74 44.6
VMungo0647G1024 Vigna mungo HOM05D004443 ORTHO05D005421 3.2e-06 57.4 70 37.1


User provided reference genes

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