Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR119G1881 Punica granatum HOM05D005156 ORTHO05D006710 2.1e-186 655.6 344 100.0
Potri.001G254000 Populus trichocarpa HOM05D005156 ORTHO05D006710 1.4e-142 510.0 341 77.4
Eucgr.J00726 Eucalyptus grandis HOM05D005156 ORTHO05D006710 3.9e-140 501.9 337 76.9
MD11G1196200 Malus domestica HOM05D005156 ORTHO05D006710 5.6e-139 498.0 342 75.1
GSVIVG01037376001 Vitis vinifera HOM05D005156 ORTHO05D006710 1.3e-138 496.9 342 75.7
CiPaw.13G153000 Carya illinoinensis HOM05D005156 ORTHO05D006710 8.1e-138 494.2 339 75.5
TAR626G1548 Trochodendron aralioides HOM05D005156 ORTHO05D006710 3.1e-137 492.3 341 74.5
Hma1.2p1_1115F.1_g258845 Hydrangea macrophylla HOM05D005156 ORTHO05D006710 4.0e-137 491.9 345 74.2
Atru.chr3.2617 Acer truncatum HOM05D005156 ORTHO05D006710 6.9e-137 491.1 331 76.7
RcHm_v2.0_Chr5g0050911 Rosa chinensis HOM05D005156 ORTHO05D006710 6.9e-137 491.1 338 75.1
Cfa009832 Carpinus fangiana HOM05D005156 ORTHO05D006710 1.5e-136 490.0 344 74.7
Sc16g0011170 Simmondsia chinensis HOM05D005156 ORTHO05D006710 1.5e-136 490.0 343 75.2
CSS0030488 Camellia sinensis var. sinensis HOM05D005156 ORTHO05D006710 2.0e-136 489.6 336 74.4
CSS0001612 Camellia sinensis var. sinensis HOM05D005156 ORTHO05D006710 1.3e-135 486.9 335 74.6
Actinidia16358 Actinidia chinensis HOM05D005156 ORTHO05D006710 2.9e-135 485.7 342 74.6
Cpa.g.sc84.13 Carica papaya HOM05D005156 ORTHO05D006710 2.9e-135 485.7 331 75.2
Prupe.4G258300 Prunus persica HOM05D005156 ORTHO05D006710 4.9e-135 485.0 344 73.0
FAN16G2156 Fragaria x ananassa HOM05D005156 ORTHO05D006710 1.1e-134 483.8 332 75.3
Migut.D00644 Erythranthe guttata HOM05D005156 ORTHO05D006710 1.2e-133 480.3 333 75.4
CsaV3_1G043140 Cucumis sativus L. HOM05D005156 ORTHO05D006710 2.1e-133 479.6 341 73.3
FvH4_3g28170 Fragaria vesca HOM05D005156 ORTHO05D006710 2.7e-133 479.2 342 73.4
Ciclev10015838m.g Citrus clementina HOM05D005156 ORTHO05D006710 1.8e-132 476.5 316 77.5
Thecc.09G243300 Theobroma cacao HOM05D005156 ORTHO05D006710 1.1e-131 473.8 337 73.6
CANSAT54G2883 Cannabis sativa HOM05D005156 ORTHO05D006710 2.5e-131 472.6 330 74.5
Lalb_Chr10g0094741 Lupinus albus HOM05D005156 ORTHO05D006710 2.5e-131 472.6 337 72.1
MSTRG.18451 Avicennia marina HOM05D005156 ORTHO05D006710 4.3e-131 471.9 330 72.7
Lj3g0017854 Lotus japonicus HOM05D005156 ORTHO05D006710 5.6e-131 471.5 337 72.4
PSO210G1653 Papaver somniferum HOM05D005156 ORTHO05D006710 2.8e-130 469.2 331 75.2
Oeu001490.1 Olea europaea HOM05D005156 ORTHO05D006710 6.2e-130 468.0 330 73.6
Gorai.001G136000 Gossypium raimondii HOM05D005156 ORTHO05D006710 1.1e-129 467.2 328 72.9
QL01p017825 Quercus lobata HOM05D005156 ORTHO05D006710 1.4e-129 466.8 346 71.4
Thhalv10011639m.g Eutrema salsugineum HOM05D005156 ORTHO05D006710 2.4e-129 466.1 328 73.8
AL1G58170 Arabidopsis lyrata HOM05D005156 ORTHO05D006710 4.0e-129 465.3 328 73.8
Gohir.A07G121700 Gossypium hirsutum HOM05D005156 ORTHO05D006710 4.0e-129 465.3 328 73.2
Gohir.D07G126000 Gossypium hirsutum HOM05D005156 ORTHO05D006710 4.0e-129 465.3 328 72.6
Carub.0001s3958 Capsella rubella HOM05D005156 ORTHO05D006710 5.3e-129 464.9 328 73.8
Ah.06g194400 Amaranthus hybridus HOM05D005156 ORTHO05D006710 2.6e-128 462.6 331 72.8
unitig_90.g27461 Utricularia gibba HOM05D005156 ORTHO05D006710 2.6e-128 462.6 330 73.0
CARHR040540 Cardamine hirsuta HOM05D005156 ORTHO05D006710 3.4e-128 462.2 328 73.2
AUR62000172 Chenopodium quinoa HOM05D005156 ORTHO05D006710 1.0e-127 460.7 337 70.3
BcaB07g33488 Brassica carinata HOM05D005156 ORTHO05D006710 1.3e-127 460.3 328 73.2
THA.LOC104804468 Tarenaya hassleriana HOM05D005156 ORTHO05D006710 1.3e-127 460.3 325 74.2
Aqoxy8s002 Aquilegia oxysepala HOM05D005156 ORTHO05D006710 1.7e-127 459.9 331 73.4
PSO210G0499 Papaver somniferum HOM05D005156 ORTHO05D006710 1.7e-127 459.9 331 74.0
BraA06t23519Z Brassica rapa HOM05D005156 ORTHO05D006710 3.8e-127 458.8 329 72.6
BcaC08g43222 Brassica carinata HOM05D005156 ORTHO05D006710 4.9e-127 458.4 327 72.5
Glyma.09G002700 Glycine max HOM05D005156 ORTHO05D006710 6.5e-127 458.0 336 71.1
AT1G50510 Arabidopsis thaliana HOM05D005156 ORTHO05D006710 1.4e-126 456.8 328 72.3
BcaC05g27410 Brassica carinata HOM05D005156 ORTHO05D006710 1.4e-126 456.8 328 72.3
EL10Ac4g10175 Beta vulgaris HOM05D005156 ORTHO05D006710 1.9e-126 456.4 330 72.4
BcaB02g11155 Brassica carinata HOM05D005156 ORTHO05D006710 3.2e-126 455.7 325 72.6
Haze_23195 Corylus avellana HOM05D005156 ORTHO05D006710 7.1e-126 454.5 351 70.7
A05p20090 Brassica napus HOM05D005156 ORTHO05D006710 3.5e-125 452.2 330 72.1
BraA05t20917Z Brassica rapa HOM05D005156 ORTHO05D006710 3.5e-125 452.2 330 72.1
TPR.G34160 Trifolium pratense HOM05D005156 ORTHO05D006710 4.6e-125 451.8 341 69.5
C05p33580 Brassica napus HOM05D005156 ORTHO05D006710 1.3e-124 450.3 330 71.8
ECA238G2265 Erigeron canadensis HOM05D005156 ORTHO05D006710 5.1e-124 448.4 339 67.6
Phvul.011G080400 Phaseolus vulgaris HOM05D005156 ORTHO05D006710 6.7e-124 448.0 335 69.3
ATR0751G133 Amborella trichopoda HOM05D005156 ORTHO05D006710 1.5e-123 446.8 300 77.0
FAN21G2369 Fragaria x ananassa HOM05D005156 ORTHO05D006710 1.9e-123 446.4 332 70.8
PGSC0003DMG400019760 Solanum tuberosum HOM05D005156 ORTHO05D006710 3.3e-123 445.7 301 76.4
MELO3C015153.2 Cucumis melo HOM05D005156 ORTHO05D006710 4.3e-123 445.3 318 73.3
CAN.G1323.2 Capsicum annuum HOM05D005156 ORTHO05D006710 5.7e-123 444.9 337 71.2
Cc01_g05890 Coffea canephora HOM05D005156 ORTHO05D006710 5.7e-123 444.9 311 74.3
Sp1g37360 Schrenkiella parvula HOM05D005156 ORTHO05D006710 7.4e-123 444.5 328 71.6
Nitab4.5_0006419g0030 Nicotiana tabacum HOM05D005156 ORTHO05D006710 3.7e-122 442.2 342 69.9
FAN25G0057 Fragaria x ananassa HOM05D005156 ORTHO05D006710 4.8e-122 441.8 340 68.8
Manes.15G112800 Manihot esculenta HOM05D005156 ORTHO05D006710 6.2e-122 441.4 274 81.0
Sed0002302 Sechium edule HOM05D005156 ORTHO05D006710 8.2e-122 441.0 338 70.7
FAN11G0102 Fragaria x ananassa HOM05D005156 ORTHO05D006710 1.1e-121 440.7 334 69.8
AUR62039839 Chenopodium quinoa HOM05D005156 ORTHO05D006710 1.8e-121 439.9 367 65.1
Solyc11g033260.2 Solanum lycopersicum HOM05D005156 ORTHO05D006710 1.8e-121 439.9 301 76.1
Psat7g227760 Pisum sativum HOM05D005156 ORTHO05D006710 2.4e-121 439.5 341 67.7
HPP92_001936 Vanilla planifolia HOM05D005156 ORTHO05D006710 2.4e-121 439.5 315 72.1
Sopen11g015730 Solanum pennellii HOM05D005156 ORTHO05D006710 3.1e-121 439.1 301 76.1
VMungo1383G1089 Vigna mungo HOM05D005156 ORTHO05D006710 2.6e-120 436.0 343 67.1
arahy.Tifrunner.gnm1.ann1.9TL5ZW Arachis hypogaea HOM05D005156 ORTHO05D006710 8.4e-119 431.0 329 69.9
arahy.Tifrunner.gnm1.ann1.KCM926 Arachis hypogaea HOM05D005156 ORTHO05D006710 8.4e-119 431.0 329 69.9
A06p03060 Brassica napus HOM05D005156 ORTHO05D006710 1.1e-118 430.6 307 73.0
C06p05700 Brassica napus HOM05D005156 ORTHO05D006710 1.4e-118 430.3 308 71.8
BolC5t32085H Brassica oleracea HOM05D005156 ORTHO05D006710 2.1e-117 426.4 364 64.0
Rhsim13G0216600 Rhododendron simsii HOM05D005156 ORTHO05D006710 2.1e-117 426.4 364 64.8
Hund21990 Selenicereus undatus HOM05D005156 ORTHO05D006710 2.1e-117 426.4 316 71.5
Peaxi162Scf00473g00218 Petunia axillaris HOM05D005156 ORTHO05D006710 6.1e-117 424.9 368 64.7
Sabra16G0154700 Salix brachista HOM05D005156 ORTHO05D006710 1.8e-116 423.3 319 70.8
SMO147G0151 Selaginella moellendorffii HOM05D005156 ORTHO05D006710 1.5e-115 420.2 322 67.4
Ca_12758_v3 Cicer arietinum L. HOM05D005156 ORTHO05D006710 2.5e-115 419.5 365 63.8
HanXRQChr06g0183211 Helianthus annuus HOM05D005156 ORTHO05D006710 7.4e-115 417.9 310 68.4
ClCG03G012920 Citrullus lanatus HOM05D005156 ORTHO05D006710 3.1e-113 412.5 371 62.3
Lsat_1_v5_gn_2_29420 Lactuca sativa HOM05D005156 ORTHO05D006710 9.0e-113 411.0 353 62.3
vmacro04002 Vaccinium macrocarpon HOM05D005156 ORTHO05D006710 1.2e-112 410.6 416 58.4
Mapoly0048s0046 Marchantia polymorpha HOM05D005156 ORTHO05D006710 6.5e-111 404.8 337 62.9
Nitab4.5_0002113g0190 Nicotiana tabacum HOM05D005156 ORTHO05D006710 1.9e-110 403.3 275 76.0
Pp3c21_8650 Physcomitrium patens HOM05D005156 ORTHO05D006710 2.5e-110 402.9 337 63.2
Os08g0504400 Oryza sativa ssp. japonica HOM05D005156 ORTHO05D006710 7.9e-109 397.9 277 73.6
Lj2C655T2 Lonicera japonica HOM05D005156 ORTHO05D006710 5.1e-108 395.2 312 69.2
CDE12G0606 Ceratophyllum demersum HOM05D005156 ORTHO05D006710 1.5e-107 393.7 279 74.2
Aa31LG10G3780 Aethionema arabicum HOM05D005156 ORTHO05D006710 1.7e-106 390.2 293 70.3
CBR_g12801 Chara braunii HOM05D005156 ORTHO05D006710 4.5e-104 382.1 299 66.9
Dinv22149 Davidia involucrata HOM05D005156 ORTHO05D006710 4.5e-104 382.1 253 77.9
SHI21395 Sapria himalayana HOM05D005156 ORTHO05D006710 1.4e-100 370.5 274 70.4
AagrBONN_evm.TU.Sc2ySwM_368.760 Anthoceros agrestis HOM05D005156 ORTHO05D006710 5.1e-100 368.6 334 59.9
DCAR_002091 Daucus carota HOM05D005156 ORTHO05D006710 1.1e-97 360.9 305 63.6
Aqoxy4G00402 Aquilegia oxysepala HOM05D005156 ORTHO05D006710 1.6e-96 357.1 331 61.9
Zm00001eb251060 Zea mays HOM05D005156 ORTHO05D006710 1.7e-95 353.6 246 71.5
MCO15G168 Micromonas commoda HOM05D005156 ORTHO05D006710 3.2e-94 349.4 299 58.2
SGA_v2.0_scaffold29G12276 Striga asiatica HOM05D005156 ORTHO05D006710 2.6e-91 339.7 218 78.9
Hma1.2p1_2309F.1_g319520 Hydrangea macrophylla HOM05D005156 ORTHO05D006710 2.8e-90 336.3 220 78.6
Lj2C684T3 Lonicera japonica HOM05D005156 ORTHO05D006710 6.3e-90 335.1 248 74.2
PRCOL_00003626 Prasinoderma coloniale HOM05D005156 ORTHO05D006710 2.9e-87 326.2 299 56.2
MBI15_g27827_MAGBIO Magnolia biondii HOM05D005156 ORTHO05D006710 2.4e-81 306.6 193 80.3
Cre02.g144000 Chlamydomonas reinhardtii HOM05D005156 ORTHO05D006710 3.1e-81 306.2 280 59.3
Medtr4g031220 Medicago truncatula HOM05D005156 ORTHO05D006710 3.2e-78 296.2 231 68.0
SMO273G0012 Selaginella moellendorffii HOM05D005156 ORTHO05D006710 6.8e-76 288.5 207 71.5
BcaB02g11038 Brassica carinata HOM05D005156 ORTHO05D006710 1.0e-71 274.6 196 73.0
Nn1g08054 Nelumbo nucifera HOM05D005156 ORTHO05D006710 6.8e-68 261.9 169 81.1
BcaB01g01392 Brassica carinata HOM05D005156 ORTHO05D006710 1.4e-65 254.2 197 69.5
Cfa025164 Carpinus fangiana HOM05D005156 ORTHO05D006710 2.4e-65 253.4 307 45.0
COL.COLO4_04116 Corchorus olitorius HOM05D005156 ORTHO05D006710 4.7e-45 186.0 137 70.1
Nn1g08053 Nelumbo nucifera HOM05D005156 ORTHO05D006710 1.4e-44 184.5 143 68.5
Haze_26247 Corylus avellana HOM05D005156 ORTHO05D006710 2.3e-44 183.7 270 43.0
Medtr4g031235 Medicago truncatula HOM05D005156 ORTHO05D006710 1.4e-33 147.9 103 70.9
SMO147G0118 Selaginella moellendorffii HOM05D005156 ORTHO05D006710 4.5e-27 126.3 247 38.9
EL10Ac8g19800 Beta vulgaris HOM05D005156 ORTHO05D006710 1.3e-26 124.8 119 56.3
ATR0585G005 Amborella trichopoda HOM05D005156 ORTHO05D006710 1.4e-25 121.3 90 66.7
Oeu016690.1 Olea europaea HOM05D005156 ORTHO05D006710 6.0e-24 115.9 91 65.9
Aqoxy1G04277 Aquilegia oxysepala HOM05D005156 ORTHO05D006710 1.3e-23 114.8 95 63.2
SalBow6G0988 Salvia bowleyana HOM05D005156 ORTHO05D006710 6.6e-23 112.5 79 70.9
SEGI_37101 Sequoiadendron giganteum HOM05D005156 ORTHO05D006710 1.8e-20 104.4 91 60.4
SMO164G0249 Selaginella moellendorffii HOM05D005156 ORTHO05D006710 6.9e-20 102.4 118 54.2
SMO147G0310 Selaginella moellendorffii HOM05D000066 ORTHO05D373802 1.7e-18 97.8 116 50.0
MELO3C034654.2 Cucumis melo HOM05D005156 ORTHO05D006710 2.2e-18 97.4 62 82.3
EL10Ac3g06833 Beta vulgaris HOM05D005156 ORTHO05D006710 2.4e-17 94.0 81 51.9
MELO3C033715.2 Cucumis melo HOM05D005156 ORTHO05D006710 1.2e-16 91.7 61 75.4
MELO3C034160.2 Cucumis melo HOM05D005156 ORTHO05D006710 1.2e-16 91.7 62 75.8
EL10Ac2g04378 Beta vulgaris HOM05D005156 ORTHO05D006710 1.6e-16 91.3 99 46.5
MELO3C030656.2 Cucumis melo HOM05D005156 ORTHO05D006710 2.1e-16 90.9 62 77.4
MELO3C030457.2 Cucumis melo HOM05D005156 ORTHO05D006710 9.6e-14 82.0 58 75.9
MELO3C016526.2 Cucumis melo HOM05D005156 ORTHO05D006710 2.8e-13 80.5 55 78.2
Hma1.2p1_1115F.1_g258870 Hydrangea macrophylla HOM05D005156 ORTHO05D006710 4.9e-10 69.7 37 78.4
SMO147G0023 Selaginella moellendorffii HOM05D005156 ORTHO05D376049 5.5e-09 66.2 129 38.8
EL10Ac2g02892 Beta vulgaris HOM05D005156 ORTHO05D039042 1.6e-08 64.7 45 66.7
EL10Ac8g20129 Beta vulgaris HOM05D005156 ORTHO05D000004 2.1e-08 64.3 89 43.8
EL10As2g23197 Beta vulgaris HOM05D005156 ORTHO05D039042 1.8e-07 61.2 43 67.4
EL10Ac9g22728 Beta vulgaris HOM05D005156 ORTHO05D000004 3.9e-07 60.1 35 80.0
Rhsim05G0077000 Rhododendron simsii HOM05D003003 ORTHO05D008343 1.9e-06 57.8 39 74.4


User provided reference genes

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