Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR119G1411 Punica granatum HOM05D001533 ORTHO05D005122 3.2e-155 552.0 339 100.0
Cpa.g.sc6.238 Carica papaya HOM05D001533 ORTHO05D005122 3.6e-106 389.0 345 64.6
Ciclev10025997m.g Citrus clementina HOM05D001533 ORTHO05D005122 8.1e-106 387.9 345 65.5
QL06p033501 Quercus lobata HOM05D001533 ORTHO05D005122 2.2e-103 379.8 345 64.3
TWI53G2031 Tripterygium wilfordii HOM05D001533 ORTHO05D005122 1.4e-102 377.1 348 63.5
Prupe.7G167200 Prunus persica HOM05D001533 ORTHO05D005122 2.4e-102 376.3 345 64.3
Manes.01G145100 Manihot esculenta HOM05D001533 ORTHO05D005122 1.2e-101 374.0 345 63.2
COL.COLO4_21923 Corchorus olitorius HOM05D001533 ORTHO05D005122 7.8e-101 371.3 346 64.2
Thecc.01G020200 Theobroma cacao HOM05D001533 ORTHO05D005122 7.8e-101 371.3 345 63.5
Peaxi162Scf00083g00714 Petunia axillaris HOM05D001533 ORTHO05D005122 3.9e-100 369.0 345 61.2
TWI09G0584 Tripterygium wilfordii HOM05D001533 ORTHO05D005122 6.6e-100 368.2 345 62.3
Potri.005G115500 Populus trichocarpa HOM05D001533 ORTHO05D005122 1.1e-99 367.5 344 63.4
Dinv33621 Davidia involucrata HOM05D001533 ORTHO05D005122 1.5e-99 367.1 345 68.4
MD02G1133400 Malus domestica HOM05D001533 ORTHO05D005122 1.5e-99 367.1 345 62.3
CAN.G1671.6 Capsicum annuum HOM05D001533 ORTHO05D005122 3.3e-99 365.9 345 62.0
Nitab4.5_0006286g0040 Nicotiana tabacum HOM05D001533 ORTHO05D005122 4.3e-99 365.5 345 61.4
Manes.02G103600 Manihot esculenta HOM05D001533 ORTHO05D005122 5.6e-99 365.2 345 71.6
MELO3C016393.2 Cucumis melo HOM05D001533 ORTHO05D005122 7.3e-99 364.8 345 62.6
Lj4g0002557 Lotus japonicus HOM05D001533 ORTHO05D005122 6.2e-98 361.7 348 60.6
vmacro18418 Vaccinium macrocarpon HOM05D001533 ORTHO05D005122 6.2e-98 361.7 331 62.2
Rhsim08G0034200 Rhododendron simsii HOM05D001533 ORTHO05D005122 1.1e-97 360.9 345 61.2
Cfa006964 Carpinus fangiana HOM05D001533 ORTHO05D005122 1.4e-97 360.5 338 61.2
FvH4_1g11960 Fragaria vesca HOM05D001533 ORTHO05D005122 1.4e-97 360.5 343 61.8
TAR381G0830 Trochodendron aralioides HOM05D001533 ORTHO05D005122 1.8e-97 360.1 345 60.6
CsaV3_4G005560 Cucumis sativus L. HOM05D001533 ORTHO05D005122 3.1e-97 359.4 345 62.0
Actinidia31002 Actinidia chinensis HOM05D001533 ORTHO05D005122 4.0e-97 359.0 345 60.9
CAN.G893.6 Capsicum annuum HOM05D001533 ORTHO05D005122 5.3e-97 358.6 345 60.3
ClCG07G008590 Citrullus lanatus HOM05D001533 ORTHO05D005122 1.2e-96 357.5 338 62.4
FAN19G0503 Fragaria x ananassa HOM05D001533 ORTHO05D005122 1.2e-96 357.5 343 61.2
FAN26G0519 Fragaria x ananassa HOM05D001533 ORTHO05D005122 1.2e-96 357.5 343 61.2
FAN28G1062 Fragaria x ananassa HOM05D001533 ORTHO05D005122 1.5e-96 357.1 343 61.2
RcHm_v2.0_Chr2g0099581 Rosa chinensis HOM05D001533 ORTHO05D005122 2.0e-96 356.7 345 61.2
Haze_03774 Corylus avellana HOM05D001533 ORTHO05D005122 2.6e-96 356.3 338 60.7
FAN23G2041 Fragaria x ananassa HOM05D001533 ORTHO05D005122 2.6e-96 356.3 342 61.1
Solyc03g033580.3 Solanum lycopersicum HOM05D001533 ORTHO05D005122 2.6e-96 356.3 345 60.6
Cc00_g26600 Coffea canephora HOM05D001533 ORTHO05D005122 7.6e-96 354.8 345 60.3
Glyma.16G129200 Glycine max HOM05D001533 ORTHO05D005122 9.9e-96 354.4 346 65.9
Sopen03g006360 Solanum pennellii HOM05D001533 ORTHO05D005122 9.9e-96 354.4 345 60.3
VMungo0251G1454 Vigna mungo HOM05D001533 ORTHO05D005122 9.9e-96 354.4 343 61.2
Glyma.02G049100 Glycine max HOM05D001533 ORTHO05D005122 1.7e-95 353.6 346 61.8
Potri.007G012600 Populus trichocarpa HOM05D001533 ORTHO05D005122 2.2e-95 353.2 344 61.3
Nn6g32353 Nelumbo nucifera HOM05D001533 ORTHO05D005122 3.8e-95 352.4 343 61.2
Hma1.2p1_0743F.1_g211570 Hydrangea macrophylla HOM05D001533 ORTHO05D005122 8.4e-95 351.3 345 70.1
Solyc02g083990.3 Solanum lycopersicum HOM05D001533 ORTHO05D005122 1.1e-94 350.9 345 59.1
CiPaw.07G057700 Carya illinoinensis HOM05D001533 ORTHO05D005122 1.4e-94 350.5 340 59.1
CiPaw.08G132200 Carya illinoinensis HOM05D001533 ORTHO05D005122 1.4e-94 350.5 345 58.8
Duzib187G1725 Durio zibethinus HOM05D001533 ORTHO05D005122 1.4e-94 350.5 347 60.5
Gorai.003G010300 Gossypium raimondii HOM05D001533 ORTHO05D005122 1.4e-94 350.5 345 65.2
Peaxi162Scf00034g00264 Petunia axillaris HOM05D001533 ORTHO05D005122 1.9e-94 350.1 345 63.8
Phvul.003G262700 Phaseolus vulgaris HOM05D001533 ORTHO05D005122 1.9e-94 350.1 343 60.1
Gohir.A02G170000 Gossypium hirsutum HOM05D001533 ORTHO05D005122 2.4e-94 349.7 345 65.2
Sabra05G0094600 Salix brachista HOM05D001533 ORTHO05D005122 3.2e-94 349.4 373 57.6
Nitab4.5_0000438g0040 Nicotiana tabacum HOM05D001533 ORTHO05D005122 7.1e-94 348.2 318 62.6
Glyma.01G166700 Glycine max HOM05D001533 ORTHO05D005122 1.6e-93 347.1 348 58.6
Ca_22369_v3 Cicer arietinum L. HOM05D001533 ORTHO05D005122 4.6e-93 345.5 348 63.2
Sopen02g028790 Solanum pennellii HOM05D001533 ORTHO05D005122 4.6e-93 345.5 345 58.0
Atru.chr3.790 Acer truncatum HOM05D001533 ORTHO05D005122 1.0e-92 344.4 345 69.0
Nitab4.5_0006119g0010 Nicotiana tabacum HOM05D001533 ORTHO05D005122 1.0e-92 344.4 344 66.6
Sed0027203 Sechium edule HOM05D001533 ORTHO05D005122 3.9e-92 342.4 346 59.0
SGA_v2.0_scaffold137G35090 Striga asiatica HOM05D001533 ORTHO05D005122 1.1e-91 340.9 345 61.2
TPR.G30063 Trifolium pratense HOM05D001533 ORTHO05D005122 1.3e-90 337.4 348 57.2
MSTRG.2705 Avicennia marina HOM05D001533 ORTHO05D005122 1.4e-89 334.0 319 66.1
Duzib264G0112 Durio zibethinus HOM05D001533 ORTHO05D005122 3.1e-89 332.8 345 63.5
CSS0008566 Camellia sinensis var. sinensis HOM05D001533 ORTHO05D005122 9.0e-89 331.3 315 61.9
Phvul.002G109200 Phaseolus vulgaris HOM05D001533 ORTHO05D005122 1.2e-88 330.9 334 57.8
VMungo1215G1138 Vigna mungo HOM05D001533 ORTHO05D005122 1.5e-88 330.5 348 56.6
PSO170G0469 Papaver somniferum HOM05D001533 ORTHO05D005122 2.6e-88 329.7 345 55.7
Lj2g0008453 Lotus japonicus HOM05D001533 ORTHO05D005122 3.4e-88 329.3 348 56.9
PSO700G0386 Papaver somniferum HOM05D001533 ORTHO05D005122 5.8e-88 328.6 345 55.7
CSS0030027 Camellia sinensis var. sinensis HOM05D001533 ORTHO05D005122 4.9e-87 325.5 345 58.0
Gohir.D03G010000 Gossypium hirsutum HOM05D001533 ORTHO05D005122 8.4e-87 324.7 345 62.0
Hma1.2p1_2281F.1_g318810 Hydrangea macrophylla HOM05D001533 ORTHO05D005122 1.1e-86 324.3 273 67.0
Gohir.A11G176200 Gossypium hirsutum HOM05D001533 ORTHO05D005122 2.1e-85 320.1 348 61.8
arahy.Tifrunner.gnm1.ann1.H1V2NS Arachis hypogaea HOM05D001533 ORTHO05D005122 7.9e-85 318.2 330 56.7
Oeu035307.1 Olea europaea HOM05D001533 ORTHO05D005122 3.9e-84 315.8 345 65.2
Hund16484 Selenicereus undatus HOM05D001533 ORTHO05D005122 3.9e-84 315.8 345 65.2
SalBow3G3323 Salvia bowleyana HOM05D001533 ORTHO05D005122 6.7e-84 315.1 394 50.3
AUR62043756 Chenopodium quinoa HOM05D001533 ORTHO05D005122 2.5e-83 313.2 347 62.0
AUR62044201 Chenopodium quinoa HOM05D001533 ORTHO05D005122 2.5e-83 313.2 347 62.0
Gorai.007G195800 Gossypium raimondii HOM05D001533 ORTHO05D005122 9.6e-83 311.2 345 61.4
Duzib147G0876 Durio zibethinus HOM05D001533 ORTHO05D005122 8.1e-82 308.1 345 60.0
TAR628G0959 Trochodendron aralioides HOM05D001533 ORTHO05D005122 1.1e-81 307.8 345 59.4
Gohir.D11G183900 Gossypium hirsutum HOM05D001533 ORTHO05D005122 1.4e-81 307.4 345 61.2
AUR62007522 Chenopodium quinoa HOM05D001533 ORTHO05D005122 2.4e-81 306.6 343 60.9
DCAR_016613 Daucus carota HOM05D001533 ORTHO05D005122 4.0e-81 305.8 340 60.6
Nn5g29330 Nelumbo nucifera HOM05D001533 ORTHO05D005122 5.3e-81 305.4 331 58.6
Glyma.11G076600 Glycine max HOM05D001533 ORTHO05D005122 2.0e-80 303.5 334 55.1
Lj2C466T13 Lonicera japonica HOM05D001533 ORTHO05D005122 7.6e-80 301.6 339 55.2
Lalb_Chr05g0229891 Lupinus albus HOM05D001533 ORTHO05D005122 9.9e-80 301.2 348 62.4
ECA246G3074 Erigeron canadensis HOM05D001533 ORTHO05D005122 5.5e-78 295.4 343 56.9
arahy.Tifrunner.gnm1.ann1.JA3WP2 Arachis hypogaea HOM05D001533 ORTHO05D005122 7.1e-78 295.0 273 60.8
Nitab4.5_0001959g0020 Nicotiana tabacum HOM05D001533 ORTHO05D005122 9.3e-78 294.7 273 61.5
GSVIVG01018794001 Vitis vinifera HOM05D001533 ORTHO05D005122 2.1e-77 293.5 338 58.0
EL10As8g23833 Beta vulgaris HOM05D001533 ORTHO05D005122 3.5e-77 292.7 312 63.5
Eucgr.J02426 Eucalyptus grandis HOM05D001533 ORTHO05D005122 3.5e-77 292.7 331 56.5
PGSC0003DMG400003635 Solanum tuberosum HOM05D001533 ORTHO05D005122 3.5e-77 292.7 247 64.8
CANSAT80G2154 Cannabis sativa HOM05D001533 ORTHO05D005122 5.6e-75 285.4 323 53.6
Lj4C217T16 Lonicera japonica HOM05D001533 ORTHO05D005122 3.7e-74 282.7 331 53.5
Os06g0715400 Oryza sativa ssp. japonica HOM05D001533 ORTHO05D005122 1.8e-73 280.4 323 51.1
Zm00001eb228040 Zea mays HOM05D001533 ORTHO05D005122 5.3e-73 278.9 322 51.9
THA.LOC104804260 Tarenaya hassleriana HOM05D001533 ORTHO05D005122 6.9e-73 278.5 326 50.0
THA.LOC104807492 Tarenaya hassleriana HOM05D001533 ORTHO05D005122 2.0e-72 276.9 342 50.3
Lalb_Chr09g0321781 Lupinus albus HOM05D001533 ORTHO05D005122 1.0e-71 274.6 344 50.9
AT2G17990 Arabidopsis thaliana HOM05D001533 ORTHO05D005122 2.9e-71 273.1 343 49.0
CANSAT01G1879 Cannabis sativa HOM05D001533 ORTHO05D005122 2.9e-71 273.1 331 55.6
Oeu005320.1 Olea europaea HOM05D001533 ORTHO05D005122 4.9e-71 272.3 311 53.4
Sp3g31420 Schrenkiella parvula HOM05D001533 ORTHO05D005122 8.4e-71 271.6 348 50.0
Aa31LG1G14750 Aethionema arabicum HOM05D001533 ORTHO05D005122 5.5e-70 268.9 346 50.9
Lalb_Chr16g0377521 Lupinus albus HOM05D001533 ORTHO05D005122 5.5e-70 268.9 346 53.5
Psat4g098560 Pisum sativum HOM05D001533 ORTHO05D005122 4.6e-69 265.8 342 59.4
AL3G51060 Arabidopsis lyrata HOM05D001533 ORTHO05D005122 1.0e-68 264.6 343 49.0
Carub.0003s3213 Capsella rubella HOM05D001533 ORTHO05D005122 6.7e-68 261.9 340 48.5
Aa31LG8G15170 Aethionema arabicum HOM05D001533 ORTHO05D005122 5.7e-67 258.8 339 50.1
Thhalv10004494m.g Eutrema salsugineum HOM05D001533 ORTHO05D005122 1.1e-65 254.6 319 49.8
CARHR108480 Cardamine hirsuta HOM05D001533 ORTHO05D005122 5.3e-65 252.3 338 48.5
MBI05_g43883_MAGBIO Magnolia biondii HOM05D001533 ORTHO05D005122 6.9e-65 251.9 322 55.0
A07p02680 Brassica napus HOM05D001533 ORTHO05D005122 1.2e-64 251.1 339 48.1
BraA07t28064Z Brassica rapa HOM05D001533 ORTHO05D005122 1.2e-64 251.1 339 48.1
Aqoxy6G02302 Aquilegia oxysepala HOM05D001533 ORTHO05D005122 2.0e-64 250.4 334 50.3
C07p04980 Brassica napus HOM05D001533 ORTHO05D005122 5.9e-64 248.8 339 47.5
BcaC06g36351 Brassica carinata HOM05D001533 ORTHO05D005122 1.0e-63 248.1 339 47.2
CDE04G1263 Ceratophyllum demersum HOM05D001533 ORTHO05D005122 2.9e-63 246.5 342 48.0
CDE02G4489 Ceratophyllum demersum HOM05D001533 ORTHO05D005122 3.8e-63 246.1 322 50.3
Ah.02g124450 Amaranthus hybridus HOM05D001533 ORTHO05D005122 1.1e-62 244.6 260 55.0
Oeu048459.1 Olea europaea HOM05D001533 ORTHO05D005122 1.9e-62 243.8 252 56.7
Thhalv10022777m.g Eutrema salsugineum HOM05D001533 ORTHO05D005122 2.5e-62 243.4 338 47.6
Psat6g005760 Pisum sativum HOM05D001533 ORTHO05D005122 3.2e-62 243.0 274 54.7
BcaB08g34783 Brassica carinata HOM05D001533 ORTHO05D005122 4.6e-61 239.2 337 47.2
Sc16g0002080 Simmondsia chinensis HOM05D001533 ORTHO05D005122 4.6e-61 239.2 348 52.9
AT5G66250 Arabidopsis thaliana HOM05D001533 ORTHO05D005122 1.1e-59 234.6 308 50.3
AL8G45270 Arabidopsis lyrata HOM05D001533 ORTHO05D005122 2.5e-59 233.4 319 48.6
Sp2g30440 Schrenkiella parvula HOM05D001533 ORTHO05D005122 1.1e-57 228.0 317 47.6
A06p33470 Brassica napus HOM05D001533 ORTHO05D005122 2.2e-55 220.3 337 45.1
BolC3t18147H Brassica oleracea HOM05D001533 ORTHO05D005122 2.9e-55 219.9 335 45.1
BraA06t26280Z Brassica rapa HOM05D001533 ORTHO05D005122 5.0e-55 219.2 335 45.1
AL6G43540 Arabidopsis lyrata HOM05D001533 ORTHO05D005122 2.1e-53 213.8 339 43.7
Carub.0008s2824 Capsella rubella HOM05D001533 ORTHO05D005122 6.7e-52 208.8 312 46.2
Medtr8g076020 Medicago truncatula HOM05D001533 ORTHO05D005122 1.1e-51 208.0 348 52.3
C03p58890 Brassica napus HOM05D001533 ORTHO05D005122 2.0e-51 207.2 337 44.5
BolC7t40899H Brassica oleracea HOM05D001533 ORTHO05D005122 4.4e-51 206.1 267 48.3
Thhalv10025665m.g Eutrema salsugineum HOM05D001533 ORTHO05D005122 4.4e-51 206.1 345 41.7
C09p11970 Brassica napus HOM05D001533 ORTHO05D005122 9.7e-51 204.9 281 49.8
AagrBONN_evm.TU.Sc2ySwM_228.4945 Anthoceros agrestis HOM05D001533 ORTHO05D005122 1.8e-49 200.7 355 36.3
Aa31LG6G13050 Aethionema arabicum HOM05D001533 ORTHO05D005122 2.4e-49 200.3 320 40.6
A09p10100 Brassica napus HOM05D001533 ORTHO05D005122 4.1e-49 199.5 280 46.8
BraA09t36653Z Brassica rapa HOM05D001533 ORTHO05D005122 2.0e-48 197.2 292 45.9
BolC9t54085H Brassica oleracea HOM05D001533 ORTHO05D005122 4.5e-48 196.1 299 46.5
BcaNung04495 Brassica carinata HOM05D001533 ORTHO05D005122 2.2e-47 193.7 266 48.9
Lsat_1_v5_gn_4_146800 Lactuca sativa HOM05D001533 ORTHO05D005122 6.5e-47 192.2 313 47.3
Lsat_1_v5_gn_4_146821 Lactuca sativa HOM05D001533 ORTHO05D005122 2.1e-45 187.2 310 46.5
Sp7g33880 Schrenkiella parvula HOM05D001533 ORTHO05D005122 6.7e-44 182.2 284 41.9
BcaNung04499 Brassica carinata HOM05D001533 ORTHO05D005122 1.8e-41 174.1 216 49.5
SMO358G0186 Selaginella moellendorffii HOM05D001533 ORTHO05D005122 4.1e-41 172.9 291 41.2
Carub.0007s0413 Capsella rubella HOM05D001533 ORTHO05D005122 9.1e-41 171.8 339 38.9
HanXRQChr16g0531321 Helianthus annuus HOM05D001533 ORTHO05D005122 1.2e-40 171.4 188 53.2
CARHR281470 Cardamine hirsuta HOM05D001533 ORTHO05D005122 1.6e-40 171.0 233 49.4
ATR0680G362 Amborella trichopoda HOM05D001533 ORTHO05D005122 6.5e-39 165.6 339 36.3
SEGI_32707 Sequoiadendron giganteum HOM05D001533 ORTHO05D005122 3.2e-38 163.3 346 32.7
HPP92_007128 Vanilla planifolia HOM05D001533 ORTHO05D005122 1.2e-32 144.8 181 50.8
MD15G1246600 Malus domestica HOM05D001533 ORTHO05D005122 2.7e-32 143.7 135 63.0
AUR62043805 Chenopodium quinoa HOM05D001533 ORTHO05D005122 5.0e-31 139.4 155 67.1
unitig_899.g14709 Utricularia gibba HOM05D001533 ORTHO05D000063 4.2e-30 136.3 152 55.3
AT4G36105 Arabidopsis thaliana HOM05D001533 ORTHO05D005122 3.1e-25 120.2 291 35.7
CARHR244500 Cardamine hirsuta HOM05D001533 ORTHO05D005122 4.1e-25 119.8 314 35.0
unitig_699.g19710 Utricularia gibba HOM05D001533 ORTHO05D005122 2.5e-22 110.5 142 66.2
C01p02930 Brassica napus HOM05D001533 ORTHO05D024397 1.2e-16 91.7 274 31.4
A01p02640 Brassica napus HOM05D001533 ORTHO05D024397 3.3e-14 83.6 201 32.3
BraA01t00250Z Brassica rapa HOM05D001533 ORTHO05D024397 3.3e-14 83.6 201 32.3
BolC1t00279H Brassica oleracea HOM05D001533 ORTHO05D024397 8.9e-12 75.5 282 29.8
BcaNung00764 Brassica carinata HOM05D001533 ORTHO05D024397 2.0e-11 74.3 282 40.1
A09p11640 Brassica napus HOM05D001533 ORTHO05D019802 2.3e-07 60.8 126 38.1
CARHR281460 Cardamine hirsuta HOM05D001533 ORTHO05D019802 8.6e-07 58.9 37 83.8
BraA09t36810Z Brassica rapa HOM05D001533 ORTHO05D019802 1.1e-06 58.5 110 39.1


User provided reference genes

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