Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR119G0799 Punica granatum HOM05D004480 ORTHO05D005546 1.0e-260 902.9 464 100.0
PGR083G0026 Punica granatum HOM05D004480 ORTHO05D005546 3.2e-230 801.6 465 90.3
Eucgr.H00240 Eucalyptus grandis HOM05D004480 ORTHO05D005546 8.5e-199 697.2 464 78.2
Manes.17G005700 Manihot esculenta HOM05D004480 ORTHO05D005546 6.8e-196 687.6 472 75.6
QL11p020579 Quercus lobata HOM05D004480 ORTHO05D005546 1.6e-192 676.4 469 76.1
Thecc.05G221800 Theobroma cacao HOM05D004480 ORTHO05D005546 1.1e-190 670.2 465 75.1
Hma1.2p1_0513F.1_g169740 Hydrangea macrophylla HOM05D004480 ORTHO05D005546 3.6e-189 665.2 477 75.3
CiPaw.01G203500 Carya illinoinensis HOM05D004480 ORTHO05D005546 2.3e-188 662.5 475 73.5
Cfa008538 Carpinus fangiana HOM05D004480 ORTHO05D005546 3.0e-188 662.1 476 73.7
GSVIVG01038269001 Vitis vinifera HOM05D004480 ORTHO05D005546 3.0e-188 662.1 472 73.7
Actinidia18384 Actinidia chinensis HOM05D004480 ORTHO05D005546 5.2e-188 661.4 466 73.8
CsaV3_3G003300 Cucumis sativus L. HOM05D004480 ORTHO05D005546 1.2e-187 660.2 479 72.7
MD01G1035500 Malus domestica HOM05D004480 ORTHO05D005546 2.0e-187 659.4 471 74.5
MD15G1320300 Malus domestica HOM05D004480 ORTHO05D005546 1.7e-186 656.4 471 73.7
Cc03_g16200 Coffea canephora HOM05D004480 ORTHO05D005546 3.7e-186 655.2 468 73.5
Duzib128G0969 Durio zibethinus HOM05D004480 ORTHO05D005546 1.1e-185 653.7 464 73.3
Sed0006001 Sechium edule HOM05D004480 ORTHO05D005546 1.1e-185 653.7 477 73.2
MELO3C013997.2 Cucumis melo HOM05D004480 ORTHO05D005546 9.1e-185 650.6 485 70.9
Gohir.D08G023800 Gossypium hirsutum HOM05D004480 ORTHO05D005546 3.5e-184 648.7 465 74.4
Gohir.A08G013400 Gossypium hirsutum HOM05D004480 ORTHO05D005546 5.9e-184 647.9 465 74.4
Glyma.18G043300 Glycine max HOM05D004480 ORTHO05D005546 1.0e-183 647.1 468 72.0
Gorai.004G019100 Gossypium raimondii HOM05D004480 ORTHO05D005546 1.0e-183 647.1 465 74.0
Atru.chr11.1453 Acer truncatum HOM05D004480 ORTHO05D005546 6.6e-183 644.4 468 72.2
Atru.chr11.1483 Acer truncatum HOM05D004480 ORTHO05D005546 6.6e-183 644.4 468 72.2
Prupe.5G084300 Prunus persica HOM05D004480 ORTHO05D005546 6.6e-183 644.4 490 70.8
Ca_17076_v3 Cicer arietinum L. HOM05D004480 ORTHO05D005546 8.6e-183 644.0 466 72.3
RcHm_v2.0_Chr1g0334711 Rosa chinensis HOM05D004480 ORTHO05D005546 1.1e-182 643.7 469 71.6
arahy.Tifrunner.gnm1.ann1.0BX3U4 Arachis hypogaea HOM05D004480 ORTHO05D005546 3.3e-182 642.1 464 73.3
RcHm_v2.0_Chr7g0210541 Rosa chinensis HOM05D004480 ORTHO05D005546 3.3e-182 642.1 469 71.0
FAN01G1951 Fragaria x ananassa HOM05D004480 ORTHO05D005546 4.2e-182 641.7 469 71.6
FAN03G0050 Fragaria x ananassa HOM05D004480 ORTHO05D005546 1.6e-181 639.8 475 70.7
MBI07_g30868_MAGBIO Magnolia biondii HOM05D004480 ORTHO05D005546 2.1e-181 639.4 499 67.3
vmacro20035 Vaccinium macrocarpon HOM05D004480 ORTHO05D005546 2.1e-181 639.4 482 71.4
Ciclev10008180m.g Citrus clementina HOM05D004480 ORTHO05D005546 3.6e-181 638.6 475 71.4
Sc03g0007800 Simmondsia chinensis HOM05D004480 ORTHO05D005546 3.6e-181 638.6 464 72.4
Nn7g35785 Nelumbo nucifera HOM05D004480 ORTHO05D005546 8.0e-181 637.5 473 70.6
CSS0010781 Camellia sinensis var. sinensis HOM05D004480 ORTHO05D005546 1.4e-180 636.7 473 72.1
MSTRG.22059 Avicennia marina HOM05D004480 ORTHO05D005546 6.8e-180 634.4 490 69.0
Lj1g0018422 Lotus japonicus HOM05D004480 ORTHO05D005546 8.9e-180 634.0 466 71.0
SalBow1G2458 Salvia bowleyana HOM05D004480 ORTHO05D005546 1.2e-179 633.6 472 71.0
Potri.017G001100 Populus trichocarpa HOM05D004480 ORTHO05D005546 3.4e-179 632.1 468 70.1
FvH4_4g10760 Fragaria vesca HOM05D004480 ORTHO05D005546 2.2e-178 629.4 469 69.3
FAN12G3644 Fragaria x ananassa HOM05D004480 ORTHO05D005546 6.4e-178 627.9 469 69.3
vmacro00734 Vaccinium macrocarpon HOM05D004480 ORTHO05D005546 8.3e-178 627.5 512 67.6
SGA_v2.0_scaffold25G11023 Striga asiatica HOM05D004480 ORTHO05D005546 1.1e-177 627.1 491 68.4
SGA_v2.0_scaffold19G08907 Striga asiatica HOM05D004480 ORTHO05D005546 1.8e-177 626.3 478 69.5
A03p48230 Brassica napus HOM05D004480 ORTHO05D005546 5.4e-177 624.8 464 70.7
THA.LOC104827565 Tarenaya hassleriana HOM05D004480 ORTHO05D005546 5.4e-177 624.8 471 70.5
Hund12181 Selenicereus undatus HOM05D004480 ORTHO05D005546 1.2e-176 623.6 472 70.3
BraA03t13931Z Brassica rapa HOM05D004480 ORTHO05D005546 1.6e-176 623.2 466 70.4
Oeu019179.1 Olea europaea HOM05D004480 ORTHO05D005546 2.0e-176 622.9 525 65.1
Sopen01g003100 Solanum pennellii HOM05D004480 ORTHO05D005546 2.0e-176 622.9 472 69.5
Phvul.001G227600 Phaseolus vulgaris HOM05D004480 ORTHO05D005546 4.6e-176 621.7 467 70.4
TAR626G1520 Trochodendron aralioides HOM05D004480 ORTHO05D005546 2.3e-175 619.4 504 66.5
FAN06G1845 Fragaria x ananassa HOM05D004480 ORTHO05D005546 2.9e-175 619.0 459 70.8
Medtr4g094615 Medicago truncatula HOM05D004480 ORTHO05D005546 2.9e-175 619.0 467 70.0
BcaB01g00536 Brassica carinata HOM05D004480 ORTHO05D005546 5.0e-175 618.2 464 69.8
Solyc01g007120.3 Solanum lycopersicum HOM05D004480 ORTHO05D005546 6.6e-175 617.8 469 69.5
C07p46260 Brassica napus HOM05D004480 ORTHO05D005546 1.1e-174 617.1 464 70.0
Nitab4.5_0002844g0040 Nicotiana tabacum HOM05D004480 ORTHO05D005546 1.1e-174 617.1 484 68.8
CANSAT21G2297 Cannabis sativa HOM05D004480 ORTHO05D005546 1.9e-174 616.3 472 68.2
Lalb_Chr08g0233091 Lupinus albus HOM05D004480 ORTHO05D005546 2.5e-174 615.9 467 70.4
BcaC06g33042 Brassica carinata HOM05D004480 ORTHO05D005546 3.3e-174 615.5 464 70.0
TPR.G4936 Trifolium pratense HOM05D004480 ORTHO05D005546 4.3e-174 615.1 467 69.8
HanXRQChr15g0465141 Helianthus annuus HOM05D004480 ORTHO05D005546 3.6e-173 612.1 473 70.4
PGSC0003DMG400021321 Solanum tuberosum HOM05D004480 ORTHO05D005546 4.7e-173 611.7 470 68.7
Dinv39175 Davidia involucrata HOM05D004480 ORTHO05D005546 8.0e-173 610.9 449 72.4
FAN12G1968 Fragaria x ananassa HOM05D004480 ORTHO05D005546 1.0e-172 610.5 454 69.6
Migut.N03010 Erythranthe guttata HOM05D004480 ORTHO05D005546 1.8e-172 609.8 471 67.9
HanXRQChr14g0458331 Helianthus annuus HOM05D004480 ORTHO05D005546 1.8e-172 609.8 473 70.0
Sp5g10950 Schrenkiella parvula HOM05D004480 ORTHO05D005546 1.8e-172 609.8 466 68.7
SalBow6G1632 Salvia bowleyana HOM05D004480 ORTHO05D005546 4.0e-172 608.6 468 69.0
TAR623G1647 Trochodendron aralioides HOM05D004480 ORTHO05D005546 6.8e-172 607.8 504 65.7
BcaNung06395 Brassica carinata HOM05D004480 ORTHO05D005546 2.6e-171 605.9 464 69.0
C01p29210 Brassica napus HOM05D004480 ORTHO05D005546 2.6e-171 605.9 464 69.0
A01p23550 Brassica napus HOM05D004480 ORTHO05D005546 3.4e-171 605.5 464 68.8
BraA01t02261Z Brassica rapa HOM05D004480 ORTHO05D005546 4.4e-171 605.1 470 67.9
BraA09t39892Z Brassica rapa HOM05D004480 ORTHO05D005546 2.9e-170 602.4 466 68.9
A09p44300 Brassica napus HOM05D004480 ORTHO05D005546 3.7e-170 602.1 464 69.2
VMungo1383G0315 Vigna mungo HOM05D004480 ORTHO05D005546 4.9e-170 601.7 465 69.5
BolC1t02850H Brassica oleracea HOM05D004480 ORTHO05D005546 2.4e-169 599.4 481 66.5
ATR0743G007 Amborella trichopoda HOM05D004480 ORTHO05D005546 1.2e-168 597.0 484 66.5
TWI74G1000 Tripterygium wilfordii HOM05D004480 ORTHO05D005546 1.2e-168 597.0 471 67.5
Peaxi162Scf00586g00512 Petunia axillaris HOM05D004480 ORTHO05D005546 1.6e-168 596.7 460 69.6
Dinv41802 Davidia involucrata HOM05D004480 ORTHO05D005546 1.7e-167 593.2 398 76.4
VMungo1309G1911 Vigna mungo HOM05D004480 ORTHO05D005546 3.0e-167 592.4 464 69.0
AL5G31690 Arabidopsis lyrata HOM05D004480 ORTHO05D005546 3.9e-167 592.0 466 68.2
arahy.Tifrunner.gnm1.ann1.JT43NG Arachis hypogaea HOM05D004480 ORTHO05D005546 3.9e-167 592.0 464 69.0
BcaNung00392 Brassica carinata HOM05D004480 ORTHO05D005546 3.9e-167 592.0 468 67.7
Nitab4.5_0002686g0020 Nicotiana tabacum HOM05D004480 ORTHO05D005546 6.6e-167 591.3 481 67.2
Sed0005158 Sechium edule HOM05D004480 ORTHO05D005546 6.6e-167 591.3 403 76.4
BolC7t45142H Brassica oleracea HOM05D004480 ORTHO05D005546 1.9e-166 589.7 468 67.9
Os01g0888700 Oryza sativa ssp. japonica HOM05D004480 ORTHO05D005546 2.5e-166 589.3 495 64.0
THA.LOC104802357 Tarenaya hassleriana HOM05D004480 ORTHO05D005546 9.5e-166 587.4 466 68.7
Carub.0005s1764 Capsella rubella HOM05D004480 ORTHO05D005546 3.6e-165 585.5 464 67.7
COL.COLO4_23990 Corchorus olitorius HOM05D004480 ORTHO05D005546 8.1e-165 584.3 470 67.4
CARHR160850 Cardamine hirsuta HOM05D004480 ORTHO05D005546 1.1e-164 583.9 471 67.1
Thhalv10010355m.g Eutrema salsugineum HOM05D004480 ORTHO05D005546 6.8e-164 581.3 475 65.1
Glyma.11G213400 Glycine max HOM05D004480 ORTHO05D005546 8.9e-164 580.9 366 78.7
Sabra17G0005500 Salix brachista HOM05D000001 ORTHO05D005546 8.9e-164 580.9 528 61.6
FAN10G1488 Fragaria x ananassa HOM05D004480 ORTHO05D005546 3.4e-163 578.9 459 68.2
FvH4_7g06440 Fragaria vesca HOM05D004480 ORTHO05D005546 1.7e-162 576.6 355 80.0
Rhsim09G0001300 Rhododendron simsii HOM05D004480 ORTHO05D005546 2.9e-162 575.9 431 71.9
ECA248G1292 Erigeron canadensis HOM05D004480 ORTHO05D005546 3.9e-159 565.5 463 66.7
Zm00001eb145320 Zea mays HOM05D004480 ORTHO05D005546 3.9e-159 565.5 481 64.4
HanXRQChr15g0464981 Helianthus annuus HOM05D004480 ORTHO05D005546 5.1e-159 565.1 332 83.4
Psat7g090480 Pisum sativum HOM05D004480 ORTHO05D005546 4.3e-158 562.0 400 72.2
DCAR_011737 Daucus carota HOM05D004480 ORTHO05D005546 9.5e-158 560.8 518 59.8
PSO732G0488 Papaver somniferum HOM05D004480 ORTHO05D005546 1.2e-157 560.5 470 66.2
PSO675G8718 Papaver somniferum HOM05D004480 ORTHO05D005546 2.1e-157 559.7 470 66.0
Zm00001eb365940 Zea mays HOM05D004480 ORTHO05D005546 3.6e-157 558.9 490 62.9
Aa31LG1G7840 Aethionema arabicum HOM05D004480 ORTHO05D005546 8.1e-157 557.8 451 65.6
C08p26540 Brassica napus HOM05D004480 ORTHO05D005546 1.8e-156 556.6 470 64.5
AT3G51270 Arabidopsis thaliana HOM05D004480 ORTHO05D005546 2.6e-155 552.7 466 64.4
BolC8t50268H Brassica oleracea HOM05D004480 ORTHO05D005546 9.9e-155 550.8 480 63.1
Cpa.g.sc9.237 Carica papaya HOM05D004480 ORTHO05D005546 2.4e-153 546.2 478 64.4
Haze_11102 Corylus avellana HOM05D004480 ORTHO05D005546 9.2e-153 544.3 456 65.1
CAN.G574.17 Capsicum annuum HOM05D004480 ORTHO05D005546 6.0e-152 541.6 431 66.8
Duzib177G0198 Durio zibethinus HOM05D004480 ORTHO05D005546 3.9e-151 538.9 397 72.0
Mapoly0052s0036 Marchantia polymorpha HOM05D004480 ORTHO05D005546 6.2e-149 531.6 466 61.4
Lsat_1_v5_gn_5_33821 Lactuca sativa HOM05D004480 ORTHO05D005546 8.1e-149 531.2 466 63.5
AUR62001702 Chenopodium quinoa HOM05D004480 ORTHO05D005546 4.0e-148 528.9 465 63.9
BcaC09g50090 Brassica carinata HOM05D004480 ORTHO05D005546 5.4e-145 518.5 419 66.1
unitig_62.g23773 Utricularia gibba HOM05D004480 ORTHO05D005546 4.6e-144 515.4 505 59.8
Aqoxy2G00126 Aquilegia oxysepala HOM05D004480 ORTHO05D005546 2.5e-142 509.6 501 56.5
Oeu061379.1 Olea europaea HOM05D004480 ORTHO05D005546 9.6e-142 507.7 274 88.7
Lju124A7T24 Lonicera japonica HOM05D004480 ORTHO05D005546 1.3e-141 507.3 279 86.4
SMO203G0211 Selaginella moellendorffii HOM05D004480 ORTHO05D005546 4.4e-139 498.8 331 73.7
CDE02G2467 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 8.7e-135 484.6 471 56.7
CDE09G0719 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 4.3e-134 482.3 409 63.1
Pp3c20_22360 Physcomitrium patens HOM05D004480 ORTHO05D005546 7.4e-134 481.5 459 56.0
ClCG10G003270 Citrullus lanatus HOM05D004480 ORTHO05D005546 5.3e-132 475.3 562 52.7
AagrBONN_evm.TU.Sc2ySwM_228.3019 Anthoceros agrestis HOM05D004480 ORTHO05D005546 4.5e-131 472.2 330 70.3
SHI53263 Sapria himalayana HOM05D004480 ORTHO05D005546 8.4e-130 468.0 333 70.6
ClCG00G001030 Citrullus lanatus HOM05D004480 ORTHO05D005546 2.4e-129 466.5 426 62.2
CDE09G0674 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 2.4e-124 449.9 439 59.0
CDE02G0168 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 9.3e-121 438.0 350 64.3
AUR62020079 Chenopodium quinoa HOM05D004480 ORTHO05D005546 1.0e-119 434.5 474 55.3
CDE09G1409 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 2.5e-118 429.9 434 57.6
CBR_g22944 Chara braunii HOM05D004480 ORTHO05D005546 6.9e-116 421.8 545 46.6
SEGI_41177 Sequoiadendron giganteum HOM05D004480 ORTHO05D005546 3.8e-106 389.4 388 56.4
CDE09G0134 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 3.3e-102 376.3 287 67.6
PRCOL_00001861 Prasinoderma coloniale HOM05D004480 ORTHO05D005546 5.3e-100 369.0 346 53.8
MCO09G317 Micromonas commoda HOM05D004480 ORTHO05D005546 2.6e-99 366.7 337 55.5
Migut.O00494 Erythranthe guttata HOM05D004480 ORTHO05D005546 4.0e-79 299.7 468 43.6
Cre03.g159900 Chlamydomonas reinhardtii HOM05D004480 ORTHO05D005546 1.3e-74 284.6 267 55.4
Ciclev10020879m.g Citrus clementina HOM05D004480 ORTHO05D005546 2.1e-64 250.8 471 40.8
Cfa009489 Carpinus fangiana HOM05D004480 ORTHO05D005546 7.5e-54 215.7 390 36.4
HPP92_020625 Vanilla planifolia HOM05D004480 ORTHO05D005546 9.5e-49 198.7 244 52.5
ClCG00G000020 Citrullus lanatus HOM05D004480 ORTHO05D005546 6.6e-42 176.0 402 35.6
SMO327G0006 Selaginella moellendorffii HOM05D004480 ORTHO05D005546 1.4e-39 168.3 121 71.9
SEGI_14248 Sequoiadendron giganteum HOM05D004480 ORTHO05D005546 1.2e-30 138.7 96 74.0
Zm00001eb233680 Zea mays HOM05D009386 ORTHO05D011419 1.7e-29 134.8 131 58.0
Lju124A7T25 Lonicera japonica HOM05D004480 ORTHO05D005546 1.6e-24 118.2 197 44.2
Zm00001eb393850 Zea mays HOM05D009386 ORTHO05D011419 5.3e-23 113.2 110 57.3
Zm00001eb011520 Zea mays HOM05D009386 ORTHO05D011419 2.0e-22 111.3 105 59.0
Oeu061378.1 Olea europaea HOM05D004480 ORTHO05D005546 9.9e-22 109.0 192 45.8
FAN07G0363 Fragaria x ananassa HOM05D004480 ORTHO05D005546 2.2e-21 107.8 195 41.5
Haze_07135 Corylus avellana HOM05D003858 ORTHO05D005878 1.5e-09 68.6 208 24.5
Medtr8g090145 Medicago truncatula HOM05D004480 ORTHO05D005546 1.9e-09 68.2 182 34.6
MCO12G200 Micromonas commoda HOM05D003858 ORTHO05D005878 1.9e-09 68.2 208 26.0
Cfa015653 Carpinus fangiana HOM05D003858 ORTHO05D005878 1.1e-07 62.4 204 24.5
Os07g0162300 Oryza sativa ssp. japonica HOM05D003858 ORTHO05D005878 1.1e-07 62.4 204 25.0


User provided reference genes

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