Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR119G0650 Punica granatum HOM05D004412 ORTHO05D005316 2.6e-152 542.0 263 100.0
Thecc.01G297900 Theobroma cacao HOM05D004412 ORTHO05D005316 5.8e-120 434.5 256 77.3
Cfa005939 Carpinus fangiana HOM05D004412 ORTHO05D005316 1.3e-116 423.3 256 77.3
COL.COLO4_23368 Corchorus olitorius HOM05D004412 ORTHO05D005316 1.8e-116 422.9 256 75.4
Haze_04907 Corylus avellana HOM05D004412 ORTHO05D005316 3.0e-116 422.2 256 76.2
TAR633G0484 Trochodendron aralioides HOM05D004412 ORTHO05D005316 5.1e-116 421.4 257 76.7
Dinv19708 Davidia involucrata HOM05D004412 ORTHO05D005316 8.7e-116 420.6 256 75.4
Duzib138G0322 Durio zibethinus HOM05D004412 ORTHO05D005316 1.1e-115 420.2 256 75.4
TWI14G0137 Tripterygium wilfordii HOM05D004412 ORTHO05D005316 1.5e-115 419.9 257 77.4
TAR362G0097 Trochodendron aralioides HOM05D004412 ORTHO05D005316 7.4e-115 417.5 256 73.8
Duzib211G0511 Durio zibethinus HOM05D004412 ORTHO05D005316 1.6e-114 416.4 258 74.0
GSVIVG01027984001 Vitis vinifera HOM05D004412 ORTHO05D005316 1.6e-114 416.4 262 76.0
Manes.05G063600 Manihot esculenta HOM05D004412 ORTHO05D005316 1.8e-113 412.9 257 75.5
Prupe.8G259100 Prunus persica HOM05D004412 ORTHO05D005316 4.1e-113 411.8 256 74.2
MD03G1285900 Malus domestica HOM05D004412 ORTHO05D005316 5.3e-113 411.4 257 73.2
Hma1.2p1_0491F.1_g164430 Hydrangea macrophylla HOM05D004412 ORTHO05D005316 9.0e-113 410.6 257 76.3
vmacro02463 Vaccinium macrocarpon HOM05D004412 ORTHO05D005316 1.5e-112 409.8 257 75.9
Eucgr.H01156 Eucalyptus grandis HOM05D004412 ORTHO05D005316 5.9e-112 407.9 270 73.3
TWI59G0713 Tripterygium wilfordii HOM05D004412 ORTHO05D005316 7.6e-112 407.5 257 76.7
Potri.002G205800 Populus trichocarpa HOM05D004412 ORTHO05D005316 1.0e-111 407.1 256 75.4
Atru.chr5.1172 Acer truncatum HOM05D004412 ORTHO05D005316 1.7e-111 406.4 256 74.6
FvH4_2g25500 Fragaria vesca HOM05D004412 ORTHO05D005316 2.9e-111 405.6 257 72.4
MD11G1305700 Malus domestica HOM05D004412 ORTHO05D005316 3.8e-111 405.2 257 71.6
Gohir.D08G052500 Gossypium hirsutum HOM05D004412 ORTHO05D005316 5.0e-111 404.8 256 72.7
THA.LOC104825974 Tarenaya hassleriana HOM05D004412 ORTHO05D005316 6.5e-111 404.4 256 74.2
Ciclev10021279m.g Citrus clementina HOM05D004412 ORTHO05D005316 2.5e-110 402.5 267 73.0
Lj2C1191G7 Lonicera japonica HOM05D004412 ORTHO05D005316 3.2e-110 402.1 275 70.2
RcHm_v2.0_Chr6g0293711 Rosa chinensis HOM05D004412 ORTHO05D005316 4.2e-110 401.7 255 72.9
Gohir.A08G042700 Gossypium hirsutum HOM05D004412 ORTHO05D005316 5.5e-110 401.4 256 71.9
Gorai.004G052600 Gossypium raimondii HOM05D004412 ORTHO05D005316 5.5e-110 401.4 256 72.3
Glyma.03G213500 Glycine max HOM05D004412 ORTHO05D005316 1.6e-109 399.8 258 73.6
FAN24G2667 Fragaria x ananassa HOM05D004412 ORTHO05D005316 4.6e-109 398.3 258 71.3
CsaV3_7G029140 Cucumis sativus L. HOM05D004412 ORTHO05D005316 7.9e-109 397.5 262 73.7
Rhsim13G0011700 Rhododendron simsii HOM05D004412 ORTHO05D005316 7.9e-109 397.5 253 74.3
DCAR_005799 Daucus carota HOM05D004412 ORTHO05D005316 1.0e-108 397.1 256 73.0
BcaB03g15756 Brassica carinata HOM05D004412 ORTHO05D005316 3.0e-108 395.6 263 70.0
CANSAT25G2200 Cannabis sativa HOM05D004412 ORTHO05D005316 3.9e-108 395.2 258 72.1
CANSAT25G3274 Cannabis sativa HOM05D004412 ORTHO05D005316 3.9e-108 395.2 258 72.1
Potri.014G130900 Populus trichocarpa HOM05D004412 ORTHO05D005316 8.7e-108 394.0 255 73.7
arahy.Tifrunner.gnm1.ann1.E95WBF Arachis hypogaea HOM05D004412 ORTHO05D005316 1.5e-107 393.3 257 74.3
Gohir.D12G135400 Gossypium hirsutum HOM05D004412 ORTHO05D005316 1.5e-107 393.3 256 71.5
Phvul.001G206100 Phaseolus vulgaris HOM05D004412 ORTHO05D005316 1.9e-107 392.9 258 71.3
Thhalv10008492m.g Eutrema salsugineum HOM05D004412 ORTHO05D005316 2.5e-107 392.5 263 69.6
arahy.Tifrunner.gnm1.ann1.K6REY5 Arachis hypogaea HOM05D004412 ORTHO05D005316 3.3e-107 392.1 257 74.3
Gorai.008G146400 Gossypium raimondii HOM05D004412 ORTHO05D005316 9.7e-107 390.6 256 71.1
TPR.G9643 Trifolium pratense HOM05D004412 ORTHO05D005316 9.7e-107 390.6 254 71.7
Hund18137 Selenicereus undatus HOM05D004412 ORTHO05D005316 1.3e-106 390.2 257 70.4
A10p01550 Brassica napus HOM05D000147 ORTHO05D001254 2.8e-106 389.0 262 70.2
QL12p027258 Quercus lobata HOM05D004412 ORTHO05D005316 3.7e-106 388.7 256 71.1
AL1G12300 Arabidopsis lyrata HOM05D004412 ORTHO05D005316 4.8e-106 388.3 267 68.9
Lalb_Chr18g0047081 Lupinus albus HOM05D004412 ORTHO05D005316 6.3e-106 387.9 265 69.4
Medtr7g108680 Medicago truncatula HOM05D004412 ORTHO05D005316 6.3e-106 387.9 259 70.3
Glyma.19G210300 Glycine max HOM05D004412 ORTHO05D005316 8.2e-106 387.5 273 68.9
BcaC07g36986 Brassica carinata HOM05D004412 ORTHO05D005316 1.4e-105 386.7 256 71.5
BcaC07g36988 Brassica carinata HOM05D004412 ORTHO05D005316 1.4e-105 386.7 256 71.5
BcaB03g13500 Brassica carinata HOM05D004412 ORTHO05D005316 1.8e-105 386.3 263 68.8
PSO302G0109 Papaver somniferum HOM05D004412 ORTHO05D005316 1.8e-105 386.3 256 70.3
Psat0s3188g0040 Pisum sativum HOM05D004412 ORTHO05D005316 1.8e-105 386.3 266 69.2
Ca_09149_v3 Cicer arietinum L. HOM05D004412 ORTHO05D005316 2.4e-105 386.0 265 69.8
BraA10t42430Z Brassica rapa HOM05D000147 ORTHO05D001254 4.1e-105 385.2 262 69.1
C08p00300 Brassica napus HOM05D004412 ORTHO05D005316 5.3e-105 384.8 256 71.1
PSO782G2310 Papaver somniferum HOM05D004412 ORTHO05D005316 6.9e-105 384.4 257 70.8
DCAR_002821 Daucus carota HOM05D004412 ORTHO05D005316 9.1e-105 384.0 266 67.7
arahy.Tifrunner.gnm1.ann1.V4DRNI Arachis hypogaea HOM05D004412 ORTHO05D005316 1.2e-104 383.6 252 70.2
Sp1g01880 Schrenkiella parvula HOM05D004412 ORTHO05D005316 1.2e-104 383.6 263 67.7
arahy.Tifrunner.gnm1.ann1.TC9I43 Arachis hypogaea HOM05D004412 ORTHO05D005316 1.5e-104 383.3 252 70.2
BolC5t28933H Brassica oleracea HOM05D004412 ORTHO05D005316 1.5e-104 383.3 265 69.1
PSO210G7114 Papaver somniferum HOM05D004412 ORTHO05D005316 1.5e-104 383.3 255 70.2
BcaC05g24629 Brassica carinata HOM05D004412 ORTHO05D005316 2.6e-104 382.5 262 69.1
A08p37550 Brassica napus HOM05D004412 ORTHO05D005316 2.6e-104 382.5 261 70.5
C05p01550 Brassica napus HOM05D000147 ORTHO05D001254 2.6e-104 382.5 262 69.1
Lj1g0006783 Lotus japonicus HOM05D004412 ORTHO05D005316 2.6e-104 382.5 267 67.8
AT1G02880 Arabidopsis thaliana HOM05D004412 ORTHO05D005316 3.4e-104 382.1 267 68.9
Sc05g0004150 Simmondsia chinensis HOM05D004412 ORTHO05D005316 4.5e-104 381.7 257 70.4
AT2G44750 Arabidopsis thaliana HOM05D004412 ORTHO05D005316 7.7e-104 380.9 267 68.2
PGR119G0381 Punica granatum HOM05D004412 ORTHO05D005316 7.7e-104 380.9 227 84.6
Migut.D00201 Erythranthe guttata HOM05D004412 ORTHO05D005316 1.0e-103 380.6 256 68.0
HPP92_013717 Vanilla planifolia HOM05D004412 ORTHO05D005316 1.0e-103 380.6 258 67.8
BolC8t46831H Brassica oleracea HOM05D004412 ORTHO05D005316 2.2e-103 379.4 259 70.3
Cc04_g10720 Coffea canephora HOM05D004412 ORTHO05D005316 2.9e-103 379.0 263 70.3
Oeu032104.1 Olea europaea HOM05D004412 ORTHO05D005316 5.0e-103 378.3 263 70.0
Aa31LG1G9690 Aethionema arabicum HOM05D004412 ORTHO05D005316 6.5e-103 377.9 257 70.4
Carub.0001s0201 Capsella rubella HOM05D004412 ORTHO05D005316 6.5e-103 377.9 257 68.5
MSTRG.18165 Avicennia marina HOM05D004412 ORTHO05D005316 3.2e-102 375.6 256 70.7
Carub.0007s3652 Capsella rubella HOM05D004412 ORTHO05D005316 5.5e-102 374.8 257 68.1
CAN.G339.23 Capsicum annuum HOM05D004412 ORTHO05D005316 5.5e-102 374.8 262 68.7
Sabra14G0097400 Salix brachista HOM05D004412 ORTHO05D005316 1.2e-101 373.6 292 64.0
MBI19_g12143_MAGBIO Magnolia biondii HOM05D004412 ORTHO05D005316 1.6e-101 373.2 316 58.9
CDE05G1992 Ceratophyllum demersum HOM05D004412 ORTHO05D005316 1.8e-100 369.8 256 69.1
EL10Ac2g03462 Beta vulgaris HOM05D004412 ORTHO05D005316 3.9e-100 368.6 271 63.1
CDE11G0241 Ceratophyllum demersum HOM05D004412 ORTHO05D005316 3.9e-100 368.6 256 68.8
ATR0693G457 Amborella trichopoda HOM05D004412 ORTHO05D005316 5.1e-100 368.2 255 67.8
Lsat_1_v5_gn_9_901 Lactuca sativa HOM05D004412 ORTHO05D005316 5.1e-100 368.2 259 68.3
ECA247G0114 Erigeron canadensis HOM05D004412 ORTHO05D005316 8.8e-100 367.5 262 66.4
HanXRQChr15g0465781 Helianthus annuus HOM05D004412 ORTHO05D005316 1.1e-99 367.1 253 68.8
HanXRQChr10g0284561 Helianthus annuus HOM05D004412 ORTHO05D005316 2.6e-99 365.9 256 67.6
Sopen09g029800 Solanum pennellii HOM05D004412 ORTHO05D005316 4.8e-98 361.7 256 66.4
PGSC0003DMG401011372 Solanum tuberosum HOM05D004412 ORTHO05D005316 6.3e-98 361.3 256 66.4
Solyc09g074970.3 Solanum lycopersicum HOM05D004412 ORTHO05D005316 2.4e-97 359.4 258 66.3
Peaxi162Scf00001g04911 Petunia axillaris HOM05D004412 ORTHO05D005316 3.1e-97 359.0 262 65.3
CSS0010827 Camellia sinensis var. sinensis HOM05D004412 ORTHO05D005316 4.1e-97 358.6 237 72.6
Manes.01G217400 Manihot esculenta HOM05D004412 ORTHO05D005316 1.2e-96 357.1 217 77.0
AUR62008659 Chenopodium quinoa HOM05D004412 ORTHO05D005316 1.5e-96 356.7 260 65.0
PSO832G3509 Papaver somniferum HOM05D004412 ORTHO05D005316 5.9e-96 354.8 256 64.8
SGA_v2.0_scaffold2G01402 Striga asiatica HOM05D002199 ORTHO05D007829 2.2e-95 352.8 256 66.0
AUR62033109 Chenopodium quinoa HOM05D000147 ORTHO05D001254 5.0e-95 351.7 256 64.5
ClCG09G005980 Citrullus lanatus HOM05D004412 ORTHO05D005316 5.0e-95 351.7 211 77.7
Zm00001eb142350 Zea mays HOM05D004412 ORTHO05D005316 8.5e-95 350.9 254 66.9
Nn4g25831 Nelumbo nucifera HOM05D004412 ORTHO05D005316 1.4e-94 350.1 212 74.5
BraA08t35652Z Brassica rapa HOM05D004412 ORTHO05D005316 1.8e-92 343.2 260 66.2
SGA_v2.0_scaffold1G00376 Striga asiatica HOM05D004412 ORTHO05D005316 1.8e-92 343.2 256 65.2
Aqoxy5G00729 Aquilegia oxysepala HOM05D004412 ORTHO05D005316 1.3e-90 337.0 211 74.4
Os05g0367400 Oryza sativa ssp. japonica HOM05D004412 ORTHO05D005316 1.3e-90 337.0 256 64.1
Os01g0356500 Oryza sativa ssp. japonica HOM05D004412 ORTHO05D005316 4.8e-90 335.1 256 61.3
QL12p026683 Quercus lobata HOM05D004412 ORTHO05D005316 3.1e-89 332.4 233 68.7
CiPaw.07G106900 Carya illinoinensis HOM05D004412 ORTHO05D005316 1.2e-88 330.5 196 78.6
Zm00001eb131550 Zea mays HOM05D004412 ORTHO05D005316 1.0e-87 327.4 271 57.6
SalBow3G3296 Salvia bowleyana HOM05D002199 ORTHO05D007829 2.9e-87 325.9 212 72.2
Hund05414 Selenicereus undatus HOM05D004412 ORTHO05D005316 5.0e-87 325.1 211 70.6
Sed0017881 Sechium edule HOM05D004412 ORTHO05D005316 1.0e-84 317.4 196 76.0
Duzib211G0323 Durio zibethinus HOM05D004412 ORTHO05D005316 2.0e-83 313.2 195 73.8
Zm00001eb285500 Zea mays HOM05D004412 ORTHO05D005316 1.4e-81 307.0 243 62.1
MELO3C016014.2 Cucumis melo HOM05D004412 ORTHO05D005316 3.1e-81 305.8 191 75.9
Pp3c4_27720 Physcomitrium patens HOM05D004412 ORTHO05D005316 2.7e-80 302.8 235 59.1
Gohir.A12G131600 Gossypium hirsutum HOM05D004412 ORTHO05D005316 1.9e-78 296.6 195 70.8
Medtr8g058563 Medicago truncatula HOM05D004412 ORTHO05D005316 1.9e-78 296.6 180 76.1
CARHR002230 Cardamine hirsuta HOM05D004412 ORTHO05D005316 4.2e-78 295.4 258 56.6
Actinidia32228 Actinidia chinensis HOM05D004412 ORTHO05D005316 5.5e-78 295.0 204 68.6
Pp3c26_15150 Physcomitrium patens HOM05D004412 ORTHO05D005316 5.5e-78 295.0 239 58.6
Dinv33040 Davidia involucrata HOM05D004412 ORTHO05D005316 3.7e-74 282.3 170 77.1
Sabra02G0153500 Salix brachista HOM05D004412 ORTHO05D005316 2.0e-72 276.6 314 48.7
AagrBONN_evm.TU.Sc2ySwM_362.2756 Anthoceros agrestis HOM05D004412 ORTHO05D005316 5.9e-72 275.0 230 57.4
Nitab4.5_0005515g0010 Nicotiana tabacum HOM05D004412 ORTHO05D005316 8.3e-66 254.6 360 41.7
unitig_0.g656 Utricularia gibba HOM05D004412 ORTHO05D005316 7.0e-65 251.5 182 67.0
Mapoly0113s0040 Marchantia polymorpha HOM05D004412 ORTHO05D005316 2.0e-64 250.0 233 51.5
Nitab4.5_0002469g0010 Nicotiana tabacum HOM05D004412 ORTHO05D005316 3.6e-61 239.2 264 50.0
SEGI_10498 Sequoiadendron giganteum HOM05D004412 ORTHO05D005316 4.1e-57 225.7 189 59.8
SMO119G0015 Selaginella moellendorffii HOM05D004412 ORTHO05D005316 2.7e-56 223.0 233 48.9
SHI29035 Sapria himalayana HOM05D004412 ORTHO05D005316 1.6e-53 213.8 211 53.1
SMO304G0134 Selaginella moellendorffii HOM05D004412 ORTHO05D005316 8.9e-52 208.0 179 57.0
CBR_g34735 Chara braunii HOM05D004412 ORTHO05D000002 1.1e-49 201.1 178 55.1
Carub.0033s0005 Capsella rubella HOM05D004412 ORTHO05D005316 1.7e-47 193.7 136 65.4
Nitab4.5_0001756g0180 Nicotiana tabacum HOM05D004412 ORTHO05D005316 3.0e-47 193.0 126 67.5
Lj1g0003703 Lotus japonicus HOM05D004412 ORTHO05D005316 2.0e-43 180.3 146 59.6
Nitab4.5_0000619g0170 Nicotiana tabacum HOM05D004412 ORTHO05D005316 4.4e-43 179.1 124 64.5
MCO04G072 Micromonas commoda HOM05D004412 ORTHO05D005316 2.7e-40 169.9 272 35.7
Cre01.g040050 Chlamydomonas reinhardtii HOM05D004412 ORTHO05D005316 3.3e-38 162.9 324 33.0
Cc01_g20710 Coffea canephora HOM05D004412 ORTHO05D005316 6.8e-36 155.2 97 69.1
Nitab4.5_0001756g0260 Nicotiana tabacum HOM05D004412 ORTHO05D005316 4.1e-33 146.0 103 67.0
SMO304G0108 Selaginella moellendorffii HOM05D004412 ORTHO05D005316 3.5e-32 142.9 178 43.3
PRCOL_00001679 Prasinoderma coloniale HOM05D004412 ORTHO05D005316 7.8e-32 141.7 274 33.9
MD11G1034700 Malus domestica HOM05D004412 ORTHO05D005316 2.3e-31 140.2 173 46.2
Nitab4.5_0001756g0250 Nicotiana tabacum HOM05D004412 ORTHO05D005316 4.7e-29 132.5 124 50.8
SMO304G0017 Selaginella moellendorffii HOM05D004412 ORTHO05D005316 2.4e-28 130.2 165 44.2
SEGI_14482 Sequoiadendron giganteum HOM05D004412 ORTHO05D005316 4.4e-27 125.9 98 61.2
SHI29034 Sapria himalayana HOM05D000105 ORTHO05D000023 7.3e-22 108.6 122 48.4
FAN16G1537 Fragaria x ananassa HOM05D004412 ORTHO05D005316 5.3e-20 102.4 102 51.0
SMO304G0077 Selaginella moellendorffii HOM05D004412 ORTHO05D005316 5.3e-20 102.4 124 43.5
MD02G1044100 Malus domestica HOM05D004412 ORTHO05D005316 8.4e-18 95.1 53 83.0
MD06G1023300 Malus domestica HOM05D004412 ORTHO05D005316 8.4e-18 95.1 53 83.0
Os01g0931400 Oryza sativa ssp. japonica HOM05D004412 ORTHO05D005316 4.2e-17 92.8 78 61.5
BcaC05g24583 Brassica carinata HOM05D004412 ORTHO05D005316 8.7e-15 85.1 56 69.6
CBR_g34733 Chara braunii HOM05D004412 ORTHO05D005316 1.3e-10 71.2 82 43.9
BcaB01g01260 Brassica carinata HOM05D004412 ORTHO05D093464 4.9e-10 69.3 51 60.8
MD02G1044000 Malus domestica HOM05D004412 ORTHO05D005316 1.3e-07 61.2 46 50.0
MD06G1023200 Malus domestica HOM05D004412 ORTHO05D005316 1.3e-07 61.2 46 50.0
AL4G43830 Arabidopsis lyrata HOM05D004412 ORTHO05D005316 1.8e-07 60.8 47 66.0
Nn1g04358 Nelumbo nucifera HOM05D004412 ORTHO05D005316 5.1e-07 59.3 39 61.5
FAN05G3835 Fragaria x ananassa HOM05D025046 ORTHO05D205720 1.9e-06 57.4 51 54.9
Duzib133G1297 Durio zibethinus HOM05D004412 ORTHO05D005316 3.3e-06 56.6 34 73.5


User provided reference genes

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