Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR111G0050 Punica granatum HOM05D000540 ORTHO05D008899 2.8e-48 194.9 94 100.0
PGR111G0124 Punica granatum HOM05D000540 ORTHO05D008899 2.8e-48 194.9 94 100.0
MELO3C028092.2 Cucumis melo HOM05D000540 ORTHO05D008899 3.4e-46 188.0 94 96.8
LjContig00489g0018536 Lotus japonicus HOM05D000540 ORTHO05D008899 3.4e-46 188.0 94 96.8
Sed0004093 Sechium edule HOM05D000540 ORTHO05D008899 3.4e-46 188.0 94 96.8
Sed0008426 Sechium edule HOM05D000540 ORTHO05D008899 3.4e-46 188.0 94 96.8
Sed0015411 Sechium edule HOM05D000540 ORTHO05D008899 3.4e-46 188.0 94 96.8
Sed0019752 Sechium edule HOM05D000540 ORTHO05D008899 3.4e-46 188.0 94 96.8
Sed0026411 Sechium edule HOM05D000540 ORTHO05D008899 3.4e-46 188.0 94 96.8
SalBow1G0808 Salvia bowleyana HOM05D000540 ORTHO05D008899 5.8e-46 187.2 94 95.7
SalBow1G3106 Salvia bowleyana HOM05D000540 ORTHO05D008899 5.8e-46 187.2 94 95.7
Sed0007321 Sechium edule HOM05D000540 ORTHO05D008899 9.9e-46 186.4 94 95.7
Nn020s41485 Nelumbo nucifera HOM05D000540 ORTHO05D008899 1.3e-45 186.0 94 95.7
Nn5g27213 Nelumbo nucifera HOM05D000540 ORTHO05D008899 1.3e-45 186.0 94 95.7
RcHm_v2.0_CPg0502591 Rosa chinensis HOM05D000540 ORTHO05D008899 1.3e-45 186.0 94 95.7
DCAR_032528 Daucus carota HOM05D000540 ORTHO05D008899 2.9e-45 184.9 94 95.7
DCAR_032548 Daucus carota HOM05D000540 ORTHO05D008899 2.9e-45 184.9 94 95.7
CAN.G1109.8 Capsicum annuum HOM05D000540 ORTHO05D008899 3.8e-45 184.5 94 94.7
CAN.G114.6 Capsicum annuum HOM05D000540 ORTHO05D008899 3.8e-45 184.5 94 94.7
CAN.G781.25 Capsicum annuum HOM05D000540 ORTHO05D008899 3.8e-45 184.5 94 94.7
CsaV3_UNG209010 Cucumis sativus L. HOM05D000540 ORTHO05D008899 3.8e-45 184.5 93 95.7
Gohir.A04G039075 Gossypium hirsutum HOM05D000540 ORTHO05D008899 4.9e-45 184.1 94 94.7
Potri.005G154350 Populus trichocarpa HOM05D000540 ORTHO05D008899 6.4e-45 183.7 94 94.7
Potri.013G138612 Populus trichocarpa HOM05D000540 ORTHO05D008899 6.4e-45 183.7 94 94.7
GSVIVG01023980001 Vitis vinifera HOM05D000540 ORTHO05D008899 6.4e-45 183.7 94 94.7
Nn1g08201 Nelumbo nucifera HOM05D000540 ORTHO05D008899 1.1e-44 183.0 94 93.6
Gohir.D01G102216 Gossypium hirsutum HOM05D000540 ORTHO05D008899 1.4e-44 182.6 94 93.6
Lalb_Chr07g0191961 Lupinus albus HOM05D000540 ORTHO05D008899 1.9e-44 182.2 94 94.7
Gohir.A10G084500 Gossypium hirsutum HOM05D000540 ORTHO05D008899 4.2e-44 181.0 94 92.6
AL2G20490 Arabidopsis lyrata HOM05D000540 ORTHO05D008899 9.3e-44 179.9 94 92.6
AL4G23550 Arabidopsis lyrata HOM05D000540 ORTHO05D008899 9.3e-44 179.9 94 92.6
ATCG00840 Arabidopsis thaliana HOM05D000540 ORTHO05D008899 9.3e-44 179.9 94 92.6
ATCG01300 Arabidopsis thaliana HOM05D000540 ORTHO05D008899 9.3e-44 179.9 94 92.6
CARHR282300 Cardamine hirsuta HOM05D000540 ORTHO05D008899 9.3e-44 179.9 94 92.6
CARHR282570 Cardamine hirsuta HOM05D000540 ORTHO05D008899 9.3e-44 179.9 94 92.6
Peaxi162Scf00211g00237 Petunia axillaris HOM05D000540 ORTHO05D008899 9.3e-44 179.9 94 93.6
RcHm_v2.0_Chr2g0118491 Rosa chinensis HOM05D000540 ORTHO05D008899 9.3e-44 179.9 94 93.6
PSO548G0098 Papaver somniferum HOM05D000540 ORTHO05D008899 2.1e-43 178.7 94 93.6
PSO548G0119 Papaver somniferum HOM05D000540 ORTHO05D008899 2.1e-43 178.7 94 93.6
Lj4g0015929 Lotus japonicus HOM05D000540 ORTHO05D008899 2.7e-43 178.3 94 91.5
AL2G21780 Arabidopsis lyrata HOM05D000540 ORTHO05D008899 3.5e-43 177.9 94 91.5
Gohir.1Z050392 Gossypium hirsutum HOM05D000540 ORTHO05D008899 3.5e-43 177.9 94 92.6
HanXRQChr00c0165g0572201 Helianthus annuus HOM05D000540 ORTHO05D008899 3.5e-43 177.9 94 92.6
HanXRQChr00c0368g0574201 Helianthus annuus HOM05D000540 ORTHO05D008899 3.5e-43 177.9 94 92.6
HanXRQChr00c0496g0575201 Helianthus annuus HOM05D000540 ORTHO05D008899 3.5e-43 177.9 94 92.6
HanXRQChr00c0572g0575951 Helianthus annuus HOM05D000540 ORTHO05D008899 3.5e-43 177.9 94 92.6
HanXRQChr00c0585g0576271 Helianthus annuus HOM05D000540 ORTHO05D008899 3.5e-43 177.9 94 92.6
HanXRQChr05g0152521 Helianthus annuus HOM05D000540 ORTHO05D008899 3.5e-43 177.9 94 92.6
HanXRQChr10g0284441 Helianthus annuus HOM05D000540 ORTHO05D008899 3.5e-43 177.9 94 92.6
HanXRQChr10g0318001 Helianthus annuus HOM05D000540 ORTHO05D008899 3.5e-43 177.9 94 92.6
HanXRQChr11g0321161 Helianthus annuus HOM05D000540 ORTHO05D008899 3.5e-43 177.9 94 92.6
HanXRQChr13g0416611 Helianthus annuus HOM05D000540 ORTHO05D008899 3.5e-43 177.9 94 92.6
HanXRQChr15g0488331 Helianthus annuus HOM05D000540 ORTHO05D008899 3.5e-43 177.9 94 92.6
LjContig00318g0005310 Lotus japonicus HOM05D000540 ORTHO05D008899 6.0e-43 177.2 94 91.5
LjContig00318g0024355 Lotus japonicus HOM05D000540 ORTHO05D008899 6.0e-43 177.2 94 91.5
LjContig00319g0005990 Lotus japonicus HOM05D000540 ORTHO05D008899 6.0e-43 177.2 94 91.5
LjContig00319g0017169 Lotus japonicus HOM05D000540 ORTHO05D008899 6.0e-43 177.2 94 91.5
Gohir.D06G104900 Gossypium hirsutum HOM05D000540 ORTHO05D008899 1.3e-42 176.0 94 89.4
Nitab4.5_0003083g0040 Nicotiana tabacum HOM05D007194 ORTHO05D008899 1.7e-42 175.6 94 91.5
Gorai.007G229500 Gossypium raimondii HOM05D000540 ORTHO05D008899 3.0e-42 174.9 94 90.4
Nn4g25233 Nelumbo nucifera HOM05D000540 ORTHO05D008899 1.9e-41 172.2 94 89.4
Nitab4.5_0001646g0030 Nicotiana tabacum HOM05D007194 ORTHO05D009182 5.6e-41 170.6 94 88.3
Nitab4.5_0002418g0160 Nicotiana tabacum HOM05D007194 ORTHO05D009182 7.3e-41 170.2 92 88.0
Nitab4.5_0020349g0050 Nicotiana tabacum HOM05D000540 ORTHO05D008899 7.3e-41 170.2 94 90.4
Gohir.D04G085766 Gossypium hirsutum HOM05D000540 ORTHO05D008899 2.8e-40 168.3 94 86.2
Gohir.D11G213500 Gossypium hirsutum HOM05D000540 ORTHO05D008899 2.8e-40 168.3 94 87.2
Gohir.D06G105280 Gossypium hirsutum HOM05D000540 ORTHO05D008899 1.1e-39 166.4 94 87.2
Migut.D01325 Erythranthe guttata HOM05D000540 ORTHO05D000681 2.0e-38 162.2 82 93.9
Nitab4.5_0014666g0090 Nicotiana tabacum HOM05D000540 ORTHO05D008899 2.6e-38 161.8 94 86.2
CAN.G1468.2 Capsicum annuum HOM05D000540 ORTHO05D008899 3.4e-38 161.4 94 84.0
Gohir.A12G089000 Gossypium hirsutum HOM05D000540 ORTHO05D008899 4.5e-38 161.0 81 95.1
Peaxi162Scf00483g00319 Petunia axillaris HOM05D000540 ORTHO05D008899 7.6e-38 160.2 81 95.1
Sed0012077 Sechium edule HOM05D000540 ORTHO05D008899 1.7e-37 159.1 94 86.2
HanXRQChr09g0256691 Helianthus annuus HOM05D000540 ORTHO05D008899 3.8e-37 157.9 83 91.6
CAN.G895.34 Capsicum annuum HOM05D000540 ORTHO05D008899 1.9e-36 155.6 94 83.0
HanXRQChr11g0352351 Helianthus annuus HOM05D000540 ORTHO05D000681 2.4e-36 155.2 82 91.5
BolSC56t61242H Brassica oleracea HOM05D000540 ORTHO05D008899 4.2e-36 154.5 84 86.9
HanXRQChr00c0349g0573971 Helianthus annuus HOM05D000540 ORTHO05D000681 7.1e-36 153.7 83 89.2
Medtr0002s0350 Medicago truncatula HOM05D000540 ORTHO05D008899 9.3e-36 153.3 82 86.6
Nitab4.5_0000031g0190 Nicotiana tabacum HOM05D007194 ORTHO05D009182 9.3e-36 153.3 81 91.4
CAN.G895.33 Capsicum annuum HOM05D000540 ORTHO05D008899 2.7e-35 151.8 94 83.0
Lalb_Chr25g0281971 Lupinus albus HOM05D000540 ORTHO05D008899 2.7e-35 151.8 94 78.7
GSVIVG01008706001 Vitis vinifera HOM05D000148 ORTHO05D000081 1.3e-34 149.4 84 84.5
AL1G45030 Arabidopsis lyrata HOM05D000540 ORTHO05D008899 3.0e-34 148.3 76 92.1
BolC2t10582H Brassica oleracea HOM05D000540 ORTHO05D008899 8.7e-34 146.7 76 90.8
Nitab4.5_0012158g0050 Nicotiana tabacum HOM05D007194 ORTHO05D009182 1.1e-31 139.8 88 79.5
HanXRQChr13g0413481 Helianthus annuus HOM05D000540 ORTHO05D008899 1.8e-31 139.0 74 90.5
Medtr4g047920 Medicago truncatula HOM05D000540 ORTHO05D000681 2.4e-31 138.7 79 84.8
CsaV3_2G008470 Cucumis sativus L. HOM05D006248 ORTHO05D007896 9.0e-31 136.7 66 97.0
Medtr4g051430 Medicago truncatula HOM05D000540 ORTHO05D000681 1.5e-30 136.0 79 83.5
HanXRQChr00c0451g0574831 Helianthus annuus HOM05D000540 ORTHO05D008899 2.0e-30 135.6 72 90.3
ClCG00G001570 Citrullus lanatus HOM05D000540 ORTHO05D008899 2.6e-30 135.2 72 88.9
Ciclev10010272m.g Citrus clementina HOM05D000540 ORTHO05D008899 9.9e-30 133.3 94 75.5
ClCG10G020130 Citrullus lanatus HOM05D000540 ORTHO05D008899 2.2e-29 132.1 94 71.3
Lsat_1_v5_gn_5_27661 Lactuca sativa HOM05D000540 ORTHO05D008899 2.9e-29 131.7 69 91.3
Lsat_1_v5_gn_7_82661 Lactuca sativa HOM05D000540 ORTHO05D008899 2.9e-29 131.7 69 91.3
Nitab4.5_0006806g0100 Nicotiana tabacum HOM05D007194 ORTHO05D009182 1.1e-28 129.8 74 83.8
GSVIVG01023244001 Vitis vinifera HOM05D000540 ORTHO05D008899 1.2e-27 126.3 86 70.9
Potri.011G074401 Populus trichocarpa HOM05D000540 ORTHO05D000681 3.5e-27 124.8 66 90.9
Nn021s41514 Nelumbo nucifera HOM05D000540 ORTHO05D008899 2.3e-26 122.1 75 80.0
Nn145s44091 Nelumbo nucifera HOM05D000540 ORTHO05D008899 2.3e-26 122.1 75 80.0
Nn3g16152 Nelumbo nucifera HOM05D000540 ORTHO05D008899 2.3e-26 122.1 75 80.0
GSVIVG01010311001 Vitis vinifera HOM05D000540 ORTHO05D008899 2.3e-26 122.1 63 93.7
Sopen01g007230 Solanum pennellii HOM05D007194 ORTHO05D009182 8.7e-26 120.2 67 88.1
Migut.D01406 Erythranthe guttata HOM05D000540 ORTHO05D000681 2.5e-25 118.6 73 80.8
Nitab4.5_0000859g0080 Nicotiana tabacum HOM05D000540 ORTHO05D008899 2.4e-23 112.1 61 86.9
HanXRQChr03g0073071 Helianthus annuus HOM05D000540 ORTHO05D008899 3.1e-23 111.7 63 85.7
HanXRQChr00c0126g0571811 Helianthus annuus HOM05D000540 ORTHO05D000681 1.2e-22 109.8 83 69.9
CSS0035327 Camellia sinensis var. sinensis HOM05D000540 ORTHO05D008899 2.0e-22 109.0 53 94.3
CSS0033691 Camellia sinensis var. sinensis HOM05D000540 ORTHO05D008899 4.5e-22 107.8 73 69.9
Nn1g04854 Nelumbo nucifera HOM05D000540 ORTHO05D008899 6.5e-21 104.0 59 86.4
Peaxi162Scf00525g00033 Petunia axillaris HOM05D000540 ORTHO05D008899 6.5e-21 104.0 62 82.3
Nitab4.5_0004376g0180 Nicotiana tabacum HOM05D000540 ORTHO05D008899 9.3e-20 100.1 59 81.4
Lalb_Chr13g0292941 Lupinus albus HOM05D000540 ORTHO05D008899 7.9e-19 97.1 56 83.9
HanXRQChr00c0512g0575371 Helianthus annuus HOM05D000540 ORTHO05D008899 1.8e-18 95.9 62 80.6
Sed0017282 Sechium edule HOM05D000540 ORTHO05D000681 1.8e-18 95.9 44 97.7
PSO357G0279 Papaver somniferum HOM05D000729 ORTHO05D001063 6.7e-18 94.0 82 64.6
Sed0006593 Sechium edule HOM05D000540 ORTHO05D000681 8.7e-18 93.6 44 95.5
arahy.Tifrunner.gnm1.ann1.LF45NH Arachis hypogaea HOM05D000540 ORTHO05D000681 2.5e-17 92.0 77 64.9
Nn1g08182 Nelumbo nucifera HOM05D000540 ORTHO05D008899 2.5e-17 92.0 47 93.6
TAR636G2296 Trochodendron aralioides HOM05D000216 ORTHO05D008899 5.7e-17 90.9 46 95.7
Lsat_1_v5_gn_3_85660 Lactuca sativa HOM05D000445 ORTHO05D008899 1.3e-16 89.7 49 85.7
Gohir.D11G067360 Gossypium hirsutum HOM05D000540 ORTHO05D000681 1.6e-16 89.4 43 93.0
HanXRQChr07g0194921 Helianthus annuus HOM05D000540 ORTHO05D008899 1.6e-16 89.4 50 84.0
vmacro07326 Vaccinium macrocarpon HOM05D003842 ORTHO05D004436 1.6e-16 89.4 61 73.8
CiPaw.06G075700 Carya illinoinensis HOM05D000540 ORTHO05D008899 5.3e-15 84.3 70 64.3
Nitab4.5_0001152g0940 Nicotiana tabacum HOM05D007194 ORTHO05D009182 9.0e-15 83.6 46 84.8
BraSC103t45440Z Brassica rapa HOM05D000540 ORTHO05D008899 4.5e-14 81.3 41 95.1
Nn4g25231 Nelumbo nucifera HOM05D000540 ORTHO05D008899 6.5e-13 77.4 37 91.9
Oeu062848.1 Olea europaea HOM05D000540 ORTHO05D008899 6.5e-13 77.4 84 51.2
Medtr2g098600 Medicago truncatula HOM05D000540 ORTHO05D008899 1.2e-11 73.2 47 74.5
EL10Ac9g22727 Beta vulgaris HOM05D000540 ORTHO05D008899 3.6e-11 71.6 41 85.4
ClCG00G001500 Citrullus lanatus HOM05D000540 ORTHO05D008899 6.1e-11 70.9 37 89.2
CAN.G1690.3 Capsicum annuum HOM05D000540 ORTHO05D000681 1.8e-10 69.3 32 96.9
HanXRQChr00c0533g0575581 Helianthus annuus HOM05D000540 ORTHO05D008899 3.9e-10 68.2 35 94.3
Migut.K00974 Erythranthe guttata HOM05D000540 ORTHO05D000681 2.5e-09 65.5 30 96.7
SMO086G0037 Selaginella moellendorffii HOM05D000540 ORTHO05D008899 7.4e-09 63.9 89 42.7


User provided reference genes

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