Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR102G3248 Punica granatum HOM05D005981 ORTHO05D007551 1.1e-80 303.1 144 100.0
PGR119G0141 Punica granatum HOM05D005981 ORTHO05D007551 3.4e-53 211.8 112 88.4
GSVIVG01034499001 Vitis vinifera HOM05D005981 ORTHO05D007551 1.5e-48 196.4 112 78.6
Eucgr.F04135 Eucalyptus grandis HOM05D005981 ORTHO05D007551 1.9e-48 196.1 112 83.0
Manes.18G100000 Manihot esculenta HOM05D005981 ORTHO05D007551 7.3e-48 194.1 106 83.0
QL02p034064 Quercus lobata HOM05D005981 ORTHO05D007551 1.2e-47 193.4 112 79.5
Nitab4.5_0000159g0230 Nicotiana tabacum HOM05D005981 ORTHO05D007551 2.1e-47 192.6 106 83.0
Nitab4.5_0006099g0030 Nicotiana tabacum HOM05D005981 ORTHO05D007551 2.1e-47 192.6 106 83.0
CANSAT56G4197 Cannabis sativa HOM05D005981 ORTHO05D007551 3.6e-47 191.8 112 78.6
Ciclev10001512m.g Citrus clementina HOM05D005981 ORTHO05D007551 4.7e-47 191.4 106 83.0
Solyc11g017230.2 Solanum lycopersicum HOM05D005981 ORTHO05D007551 4.7e-47 191.4 110 79.1
Sopen11g009130 Solanum pennellii HOM05D005981 ORTHO05D007551 4.7e-47 191.4 110 79.1
Thecc.08G202800 Theobroma cacao HOM05D005981 ORTHO05D007551 4.7e-47 191.4 106 82.1
CSS0002602 Camellia sinensis var. sinensis HOM05D005981 ORTHO05D007551 6.2e-47 191.0 112 78.6
PSO017G5512 Papaver somniferum HOM05D005981 ORTHO05D007551 6.2e-47 191.0 112 78.6
Sabra13G0096800 Salix brachista HOM05D005981 ORTHO05D008130 6.2e-47 191.0 112 75.9
Sed0004103 Sechium edule HOM05D005981 ORTHO05D007551 6.2e-47 191.0 106 80.2
CAN.G61.32 Capsicum annuum HOM05D005981 ORTHO05D007551 8.0e-47 190.7 110 78.2
MBI17_g15293_MAGBIO Magnolia biondii HOM05D005981 ORTHO05D007551 8.0e-47 190.7 106 79.2
CsaV3_2G033430 Cucumis sativus L. HOM05D005981 ORTHO05D007551 1.1e-46 190.3 106 79.2
ClCG11G008230 Citrullus lanatus HOM05D005981 ORTHO05D007551 1.8e-46 189.5 106 79.2
MELO3C008115.2 Cucumis melo HOM05D005981 ORTHO05D007551 1.8e-46 189.5 106 78.3
Dinv41689 Davidia involucrata HOM05D005981 ORTHO05D007551 1.8e-46 189.5 104 81.7
Os01g0874800 Oryza sativa ssp. japonica HOM05D005981 ORTHO05D007551 1.8e-46 189.5 106 77.4
TWI60G0628 Tripterygium wilfordii HOM05D005981 ORTHO05D007551 3.1e-46 188.7 112 77.7
MD10G1046800 Malus domestica HOM05D005981 ORTHO05D007551 4.0e-46 188.3 112 75.9
Potri.013G114400 Populus trichocarpa HOM05D005981 ORTHO05D007551 4.0e-46 188.3 112 75.0
Duzib177G0330 Durio zibethinus HOM05D005981 ORTHO05D007551 5.2e-46 188.0 106 81.1
ATR1134G043 Amborella trichopoda HOM05D005981 ORTHO05D007551 8.9e-46 187.2 106 78.3
FAN20G1782 Fragaria x ananassa HOM05D005981 ORTHO05D007551 1.2e-45 186.8 112 75.0
Gohir.A05G274500 Gossypium hirsutum HOM05D005981 ORTHO05D007551 1.2e-45 186.8 106 80.2
Gohir.D05G276700 Gossypium hirsutum HOM05D005981 ORTHO05D007551 1.2e-45 186.8 106 80.2
Atru.chr13.1806 Acer truncatum HOM05D005981 ORTHO05D007551 1.5e-45 186.4 112 75.9
Atru.chr13.1816 Acer truncatum HOM05D005981 ORTHO05D007551 1.5e-45 186.4 112 75.9
FvH4_2g12160 Fragaria vesca HOM05D005981 ORTHO05D007551 1.5e-45 186.4 112 75.0
FAN24G2303 Fragaria x ananassa HOM05D005981 ORTHO05D007551 1.5e-45 186.4 112 75.0
FAN27G0258 Fragaria x ananassa HOM05D005981 ORTHO05D007551 1.5e-45 186.4 112 75.0
Aqoxy5G02601 Aquilegia oxysepala HOM05D005981 ORTHO05D007551 2.0e-45 186.0 106 80.2
CiPaw.16G062400 Carya illinoinensis HOM05D005981 ORTHO05D007551 2.0e-45 186.0 112 76.8
Prupe.8G055700 Prunus persica HOM05D005981 ORTHO05D007551 2.6e-45 185.7 112 74.1
RcHm_v2.0_Chr6g0272141 Rosa chinensis HOM05D005981 ORTHO05D007551 2.6e-45 185.7 112 74.1
MBI17_g01761_MAGBIO Magnolia biondii HOM05D005981 ORTHO05D007551 3.4e-45 185.3 106 77.4
MD05G1040800 Malus domestica HOM05D005981 ORTHO05D007551 3.4e-45 185.3 112 75.0
THA.LOC104806782 Tarenaya hassleriana HOM05D005981 ORTHO05D007551 3.4e-45 185.3 110 76.4
VMungo0464G1554 Vigna mungo HOM05D005981 ORTHO05D007551 3.4e-45 185.3 112 75.9
arahy.Tifrunner.gnm1.ann1.SEU8EV Arachis hypogaea HOM05D005981 ORTHO05D007551 4.4e-45 184.9 112 75.9
arahy.Tifrunner.gnm1.ann1.VB64T6 Arachis hypogaea HOM05D005981 ORTHO05D007551 4.4e-45 184.9 112 75.9
Actinidia23324 Actinidia chinensis HOM05D005981 ORTHO05D007551 7.5e-45 184.1 106 79.2
Gorai.009G289700 Gossypium raimondii HOM05D005981 ORTHO05D007551 7.5e-45 184.1 131 67.9
CDE06G1238 Ceratophyllum demersum HOM05D005981 ORTHO05D007551 9.8e-45 183.7 121 71.1
Oeu021010.1 Olea europaea HOM05D005981 ORTHO05D007551 9.8e-45 183.7 106 80.2
Peaxi162Scf00495g00015 Petunia axillaris HOM05D005981 ORTHO05D007551 9.8e-45 183.7 118 70.3
Phvul.004G084494 Phaseolus vulgaris HOM05D005981 ORTHO05D007551 1.3e-44 183.3 112 74.1
DCAR_023098 Daucus carota HOM05D005981 ORTHO05D007551 2.2e-44 182.6 112 74.1
Lalb_Chr03g0035881 Lupinus albus HOM05D005981 ORTHO05D007551 3.7e-44 181.8 112 75.0
Migut.C01243 Erythranthe guttata HOM05D005981 ORTHO05D007551 4.9e-44 181.4 106 77.4
Psat1g098600 Pisum sativum HOM05D005981 ORTHO05D007551 8.3e-44 180.6 112 75.0
Sc23g0001130 Simmondsia chinensis HOM05D005981 ORTHO05D007551 1.9e-43 179.5 106 74.5
SalBow7G4031 Salvia bowleyana HOM05D006403 ORTHO05D008130 3.2e-43 178.7 110 72.7
Medtr6g033525 Medicago truncatula HOM05D005981 ORTHO05D007551 4.1e-43 178.3 112 75.0
SGA_v2.0_scaffold118G32466 Striga asiatica HOM05D005981 ORTHO05D007551 5.4e-43 177.9 104 77.9
HPP92_000088 Vanilla planifolia HOM05D005981 ORTHO05D007551 5.4e-43 177.9 106 75.5
Lj2g0016315 Lotus japonicus HOM05D005981 ORTHO05D007551 7.0e-43 177.6 112 73.2
BraA09t38748Z Brassica rapa HOM05D005981 ORTHO05D007551 9.2e-43 177.2 106 75.5
Aa31LG6G8450 Aethionema arabicum HOM05D005981 ORTHO05D007551 1.6e-42 176.4 106 74.5
Cc00_g04830 Coffea canephora HOM05D005981 ORTHO05D007551 1.6e-42 176.4 106 74.5
HanXRQChr04g0107411 Helianthus annuus HOM05D005981 ORTHO05D007551 2.1e-42 176.0 112 71.4
AL1G48940 Arabidopsis lyrata HOM05D005981 ORTHO05D007551 3.5e-42 175.3 106 74.5
BcaB07g33127 Brassica carinata HOM05D005981 ORTHO05D007551 3.5e-42 175.3 106 74.5
A09p32090 Brassica napus HOM05D005981 ORTHO05D007551 3.5e-42 175.3 106 74.5
Carub.0001s3253 Capsella rubella HOM05D005981 ORTHO05D007551 3.5e-42 175.3 106 74.5
Hund27079 Selenicereus undatus HOM05D005981 ORTHO05D007551 6.0e-42 174.5 106 76.4
BcaC08g43776 Brassica carinata HOM05D005981 ORTHO05D007551 7.8e-42 174.1 106 74.5
C06p11540 Brassica napus HOM05D005981 ORTHO05D007551 7.8e-42 174.1 106 74.5
BolC6t36287H Brassica oleracea HOM05D005981 ORTHO05D007551 7.8e-42 174.1 106 74.5
vmacro12496 Vaccinium macrocarpon HOM05D005981 ORTHO05D007551 7.8e-42 174.1 112 72.3
AT1G34380 Arabidopsis thaliana HOM05D005981 ORTHO05D007551 1.0e-41 173.7 106 73.6
AUR62023576 Chenopodium quinoa HOM05D005981 ORTHO05D007551 1.0e-41 173.7 109 74.3
Zm00001eb146190 Zea mays HOM05D005981 ORTHO05D007551 1.3e-41 173.3 115 67.0
CARHR033840 Cardamine hirsuta HOM05D005981 ORTHO05D007551 1.7e-41 172.9 106 72.6
Sp1g29600 Schrenkiella parvula HOM05D005981 ORTHO05D007551 2.3e-41 172.6 106 73.6
Lj7A293G47 Lonicera japonica HOM05D005981 ORTHO05D007551 3.9e-41 171.8 106 73.6
Rhsim04G0161600 Rhododendron simsii HOM05D005981 ORTHO05D007551 3.9e-41 171.8 112 70.5
Rhsim06G0097100 Rhododendron simsii HOM05D005981 ORTHO05D007551 3.9e-41 171.8 112 70.5
EL10Ac1g00070 Beta vulgaris HOM05D005981 ORTHO05D007551 5.0e-41 171.4 105 75.2
TPR.G36660 Trifolium pratense HOM05D005981 ORTHO05D007551 6.6e-41 171.0 112 72.3
AUR62004659 Chenopodium quinoa HOM05D005981 ORTHO05D007551 8.6e-41 170.6 111 71.2
Thhalv10008072m.g Eutrema salsugineum HOM05D005981 ORTHO05D007551 1.1e-40 170.2 106 71.7
Ca_14000_v3 Cicer arietinum L. HOM05D005981 ORTHO05D007551 1.9e-40 169.5 112 70.5
HPP92_000081 Vanilla planifolia HOM05D005981 ORTHO05D007551 1.9e-40 169.5 101 74.3
Ah.05g177990 Amaranthus hybridus HOM05D005981 ORTHO05D001449 4.3e-40 168.3 105 73.3
CSS0046436 Camellia sinensis var. sinensis HOM05D005981 ORTHO05D007551 1.1e-38 163.7 166 53.0
Lsat_1_v5_gn_1_10481 Lactuca sativa HOM05D005981 ORTHO05D007551 6.8e-38 161.0 110 68.2
unitig_747.g21468 Utricularia gibba HOM05D005981 ORTHO05D007551 3.4e-37 158.7 106 67.9
Mapoly0035s0044 Marchantia polymorpha HOM05D005981 ORTHO05D007551 7.8e-34 147.5 112 61.6
MSTRG.1511 Avicennia marina HOM05D005981 ORTHO05D007551 1.0e-33 147.1 82 79.3
Pp3c1_23520 Physcomitrium patens HOM05D005981 ORTHO05D007551 4.3e-32 141.7 112 58.9
SMO271G0041 Selaginella moellendorffii HOM05D005981 ORTHO05D007551 4.7e-31 138.3 112 58.0
SMO308G0008 Selaginella moellendorffii HOM05D005981 ORTHO05D007551 2.4e-30 136.0 112 58.0
SMO174G0158 Selaginella moellendorffii HOM05D005981 ORTHO05D007551 4.4e-29 131.7 112 55.4
AagrBONN_evm.TU.Sc2ySwM_344.1289 Anthoceros agrestis HOM05D005981 ORTHO05D007551 5.8e-29 131.3 112 55.4
COL.COLO4_36657 Corchorus olitorius HOM05D005981 ORTHO05D007551 1.3e-28 130.2 72 84.7
Cfa014371 Carpinus fangiana HOM05D005981 ORTHO05D007551 1.1e-27 127.1 90 70.0
PGSC0003DMG400009236 Solanum tuberosum HOM05D005981 ORTHO05D007551 2.4e-27 125.9 73 79.5
MSTRG.1517 Avicennia marina HOM05D005981 ORTHO05D007551 2.7e-26 122.5 74 74.3
Glyma.16G156300 Glycine max HOM05D005981 ORTHO05D007551 2.3e-25 119.4 112 55.4
arahy.Tifrunner.gnm1.ann1.XJI1XC Arachis hypogaea HOM05D005981 ORTHO05D007551 1.9e-24 116.3 68 73.5
Glyma.02G074400 Glycine max HOM05D005981 ORTHO05D007551 2.1e-23 112.8 73 71.2
SEGI_14270 Sequoiadendron giganteum HOM05D005981 ORTHO05D007551 1.4e-22 110.2 74 68.9
Zm00001eb366480 Zea mays HOM05D005981 ORTHO05D007551 4.0e-22 108.6 63 68.3
SMO308G0023 Selaginella moellendorffii HOM05D005981 ORTHO05D007551 7.1e-19 97.8 84 56.0
SMO308G0062 Selaginella moellendorffii HOM05D005981 ORTHO05D007551 7.1e-19 97.8 84 56.0
CBR_g56098 Chara braunii HOM05D005981 ORTHO05D007551 9.3e-19 97.4 105 43.8
TAR381G0932 Trochodendron aralioides HOM05D005981 ORTHO05D007551 3.6e-15 85.5 80 47.5
SMO210G0005 Selaginella moellendorffii HOM05D005981 ORTHO05D007551 8.4e-12 74.3 67 58.2
SMO271G0001 Selaginella moellendorffii HOM05D005981 ORTHO05D007551 1.1e-11 73.9 73 54.8
SMO210G0002 Selaginella moellendorffii HOM05D005981 ORTHO05D007551 4.3e-08 62.0 52 55.8


User provided reference genes

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