Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR102G3060 Punica granatum HOM05D004907 ORTHO05D005707 2.8e-249 864.8 419 100.0
QL03p059196 Quercus lobata HOM05D004907 ORTHO05D005707 2.7e-103 379.8 379 50.1
Haze_12215 Corylus avellana HOM05D004907 ORTHO05D005707 7.9e-103 378.3 377 50.7
Cfa009182 Carpinus fangiana HOM05D004907 ORTHO05D005707 1.9e-101 373.6 375 49.9
Lj6P808T27 Lonicera japonica HOM05D004907 ORTHO05D005707 9.7e-101 371.3 377 50.7
Duzib268G1138 Durio zibethinus HOM05D004907 ORTHO05D005707 6.3e-100 368.6 380 49.2
Nitab4.5_0015209g0010 Nicotiana tabacum HOM05D004907 ORTHO05D005707 1.1e-99 367.9 375 48.5
Cfa009181 Carpinus fangiana HOM05D004907 ORTHO05D005707 2.4e-99 366.7 377 48.8
Manes.13G027600 Manihot esculenta HOM05D004907 ORTHO05D005707 2.4e-99 366.7 373 49.6
Gohir.D02G160600 Gossypium hirsutum HOM05D004907 ORTHO05D005707 1.5e-98 364.0 376 47.3
Nitab4.5_0000338g0040 Nicotiana tabacum HOM05D004907 ORTHO05D005707 1.5e-98 364.0 375 48.3
PGR119G0630 Punica granatum HOM05D004907 ORTHO05D005707 4.5e-98 362.5 375 48.3
CiPaw.05G186900 Carya illinoinensis HOM05D004907 ORTHO05D005707 1.3e-97 360.9 377 48.3
Eucgr.H02549 Eucalyptus grandis HOM05D004907 ORTHO05D005707 3.8e-97 359.4 376 49.7
CAN.G728.4 Capsicum annuum HOM05D004907 ORTHO05D005707 1.4e-96 357.5 376 47.6
Eucgr.H02548 Eucalyptus grandis HOM05D004907 ORTHO05D005707 3.2e-96 356.3 377 49.9
Duzib268G1696 Durio zibethinus HOM05D004907 ORTHO05D005707 7.2e-96 355.1 369 49.3
Gohir.D01G149900 Gossypium hirsutum HOM05D004907 ORTHO05D005707 7.2e-96 355.1 369 48.0
Thecc.02G254700 Theobroma cacao HOM05D004907 ORTHO05D005707 7.2e-96 355.1 377 48.3
Gorai.002G186000 Gossypium raimondii HOM05D004907 ORTHO05D005707 1.8e-94 350.5 369 47.4
CSS0001528 Camellia sinensis var. sinensis HOM05D004907 ORTHO05D005707 3.9e-94 349.4 377 49.6
Gohir.A03G137500 Gossypium hirsutum HOM05D004907 ORTHO05D005707 6.7e-94 348.6 376 46.5
Hma1.2p1_0160F.1_g071120 Hydrangea macrophylla HOM05D004907 ORTHO05D005707 6.7e-94 348.6 376 48.9
PGSC0003DMG400013488 Solanum tuberosum HOM05D004907 ORTHO05D005707 8.8e-94 348.2 376 47.9
Prupe.1G249900 Prunus persica HOM05D004907 ORTHO05D005707 5.7e-93 345.5 372 47.6
Gorai.005G180700 Gossypium raimondii HOM05D004907 ORTHO05D005707 6.3e-92 342.0 376 45.7
Sopen05g001160 Solanum pennellii HOM05D004907 ORTHO05D005707 6.3e-92 342.0 380 47.4
CiPaw.06G069900 Carya illinoinensis HOM05D004907 ORTHO05D005707 1.4e-91 340.9 374 47.1
Rhsim12G0042700 Rhododendron simsii HOM05D004907 ORTHO05D005707 2.4e-91 340.1 373 48.8
Solyc05g005150.1 Solanum lycopersicum HOM05D004907 ORTHO05D005707 2.4e-91 340.1 380 46.8
Gohir.A05G313700 Gossypium hirsutum HOM05D004907 ORTHO05D005707 6.9e-91 338.6 393 44.8
Cc11_g15390 Coffea canephora HOM05D004907 ORTHO05D005707 2.0e-90 337.0 380 46.3
Hma1.2p1_0223F.1_g094330 Hydrangea macrophylla HOM05D004907 ORTHO05D005707 3.4e-90 336.3 377 46.4
Sc04g0009300 Simmondsia chinensis HOM05D004907 ORTHO05D005707 1.3e-89 334.3 376 46.5
Gorai.009G337200 Gossypium raimondii HOM05D004907 ORTHO05D005707 3.8e-89 332.8 393 44.8
CANSAT01G1025 Cannabis sativa HOM05D004907 ORTHO05D005707 5.0e-89 332.4 372 47.0
MD13G1095300 Malus domestica HOM05D004907 ORTHO05D005707 1.1e-88 331.3 378 45.5
Atru.chr11.2072 Acer truncatum HOM05D004907 ORTHO05D005707 1.4e-88 330.9 359 49.3
MD16G1096400 Malus domestica HOM05D004907 ORTHO05D005707 2.5e-88 330.1 382 45.8
Lsat_1_v5_gn_8_154601 Lactuca sativa HOM05D004907 ORTHO05D005707 1.2e-87 327.8 371 46.6
Rhsim12G0113900 Rhododendron simsii HOM05D004907 ORTHO05D005707 6.1e-87 325.5 375 43.5
Lj4g0000696 Lotus japonicus HOM05D004907 ORTHO05D005707 8.0e-87 325.1 382 45.3
DCAR_007072 Daucus carota HOM05D004907 ORTHO05D005707 5.2e-86 322.4 372 44.6
Ciclev10031561m.g Citrus clementina HOM05D004907 ORTHO05D005707 1.1e-85 321.2 407 44.7
MD16G1096500 Malus domestica HOM05D004907 ORTHO05D005707 2.0e-85 320.5 372 46.5
RcHm_v2.0_Chr4g0441991 Rosa chinensis HOM05D004907 ORTHO05D005707 2.6e-85 320.1 380 46.6
ClCG05G025500 Citrullus lanatus HOM05D004907 ORTHO05D005707 3.3e-85 319.7 380 43.4
TAR374G1110 Trochodendron aralioides HOM05D004907 ORTHO05D005707 5.7e-85 318.9 378 43.7
FvH4_4g32970 Fragaria vesca HOM05D004907 ORTHO05D005707 4.8e-84 315.8 386 45.6
Lsat_1_v5_gn_3_28580 Lactuca sativa HOM05D004907 ORTHO05D005707 4.8e-84 315.8 369 46.6
Potri.010G042900 Populus trichocarpa HOM05D004907 ORTHO05D005707 6.3e-84 315.5 396 43.9
FAN12G3344 Fragaria x ananassa HOM05D004907 ORTHO05D005707 1.4e-83 314.3 386 45.9
MSTRG.7910 Avicennia marina HOM05D004907 ORTHO05D005707 1.8e-83 313.9 387 44.7
Gohir.A01G160100 Gossypium hirsutum HOM05D004907 ORTHO05D005707 1.2e-82 311.2 309 49.2
Sabra10G0024600 Salix brachista HOM05D004907 ORTHO05D005707 1.6e-82 310.8 394 43.1
FAN07G1203 Fragaria x ananassa HOM05D004907 ORTHO05D005707 1.0e-81 308.1 378 45.0
Psat5g210760 Pisum sativum HOM05D004907 ORTHO05D005707 1.3e-81 307.8 373 43.4
Oeu001729.1 Olea europaea HOM05D004907 ORTHO05D005707 1.7e-81 307.4 372 43.8
FAN17G0584 Fragaria x ananassa HOM05D004907 ORTHO05D005707 5.0e-81 305.8 378 45.0
TWI36G0219 Tripterygium wilfordii HOM05D004907 ORTHO05D005707 8.5e-81 305.1 379 43.8
MSTRG.2405 Avicennia marina HOM05D004907 ORTHO05D005707 1.9e-80 303.9 380 44.2
AUR62014077 Chenopodium quinoa HOM05D004907 ORTHO05D005707 2.5e-80 303.5 373 41.0
AUR62005416 Chenopodium quinoa HOM05D004907 ORTHO05D005707 3.2e-80 303.1 377 42.4
FAN22G1867 Fragaria x ananassa HOM05D004907 ORTHO05D005707 4.2e-80 302.8 375 44.8
MELO3C011980.2 Cucumis melo HOM05D004907 ORTHO05D005707 2.1e-79 300.4 372 41.4
Haze_12216 Corylus avellana HOM05D004907 ORTHO05D005707 4.7e-79 299.3 375 42.7
Ca_03137_v3 Cicer arietinum L. HOM05D004907 ORTHO05D005707 2.3e-78 297.0 373 42.9
CsaV3_5G031400 Cucumis sativus L. HOM05D004907 ORTHO05D005707 8.8e-78 295.0 372 41.1
Glyma.01G028800 Glycine max HOM05D004907 ORTHO05D005707 1.2e-77 294.7 383 43.3
Nn4g22709 Nelumbo nucifera HOM05D004907 ORTHO05D005707 1.2e-77 294.7 398 42.0
SalBow2G1155 Salvia bowleyana HOM05D004907 ORTHO05D005707 2.6e-77 293.5 367 45.5
VMungo1215G1811 Vigna mungo HOM05D004907 ORTHO05D005707 2.6e-77 293.5 374 44.9
Migut.L01466 Erythranthe guttata HOM05D004907 ORTHO05D005707 5.7e-77 292.4 371 45.0
Actinidia27794 Actinidia chinensis HOM05D004907 ORTHO05D005707 7.5e-77 292.0 381 43.8
Glyma.02G036400 Glycine max HOM05D004907 ORTHO05D005707 6.3e-76 288.9 379 42.5
HanXRQChr06g0173591 Helianthus annuus HOM05D004907 ORTHO05D005707 6.3e-76 288.9 382 40.8
TPR.G24774 Trifolium pratense HOM05D004907 ORTHO05D005707 6.3e-76 288.9 376 42.3
Lj2g0022644 Lotus japonicus HOM05D004907 ORTHO05D005707 1.8e-75 287.3 372 43.0
Medtr5g033880 Medicago truncatula HOM05D004907 ORTHO05D005707 2.4e-75 287.0 380 41.8
Glyma.08G284600 Glycine max HOM05D004907 ORTHO05D005707 4.1e-75 286.2 378 41.5
Oeu056415.1 Olea europaea HOM05D004907 ORTHO05D005707 5.3e-75 285.8 365 40.0
Medtr8g069800 Medicago truncatula HOM05D004907 ORTHO05D005707 1.2e-74 284.6 374 40.9
Phvul.003G062300 Phaseolus vulgaris HOM05D004907 ORTHO05D005707 5.9e-74 282.3 372 42.2
Psat2g106360 Pisum sativum HOM05D004907 ORTHO05D005707 5.9e-74 282.3 374 41.7
Lalb_Chr05g0216711 Lupinus albus HOM05D004907 ORTHO05D005707 1.3e-73 281.2 371 39.6
Glyma.18G141000 Glycine max HOM05D004907 ORTHO05D005707 3.2e-72 276.6 381 41.7
Oeu056417.1 Olea europaea HOM05D004907 ORTHO05D005707 1.6e-71 274.2 372 40.1
Thecc.02G254800 Theobroma cacao HOM05D004907 ORTHO05D005707 4.7e-71 272.7 363 43.3
Sed0025966 Sechium edule HOM05D002061 ORTHO05D005707 6.1e-71 272.3 370 39.5
Aqoxy3G02876 Aquilegia oxysepala HOM05D004907 ORTHO05D005707 1.0e-70 271.6 386 38.3
SalBow3G2985 Salvia bowleyana HOM05D004907 ORTHO05D005707 2.3e-70 270.4 375 41.3
PSO782G1891 Papaver somniferum HOM05D004907 ORTHO05D005707 8.8e-70 268.5 382 39.3
THA.LOC104822976 Tarenaya hassleriana HOM05D004907 ORTHO05D005707 2.0e-69 267.3 393 42.0
Medtr5g043750 Medicago truncatula HOM05D004907 ORTHO05D005707 7.5e-69 265.4 373 39.9
Sed0027759 Sechium edule HOM05D004907 ORTHO05D005707 2.2e-68 263.8 370 38.9
COL.COLO4_24215 Corchorus olitorius HOM05D004907 ORTHO05D005707 2.8e-68 263.5 282 46.8
Dinv15270 Davidia involucrata HOM05D004907 ORTHO05D005707 6.3e-68 262.3 265 49.4
Oeu055460.1 Olea europaea HOM05D004907 ORTHO05D005707 5.4e-67 259.2 387 40.8
PSO063G4965 Papaver somniferum HOM05D004907 ORTHO05D005707 9.1e-67 258.5 407 36.9
PSO170G1656 Papaver somniferum HOM05D004907 ORTHO05D005707 1.6e-66 257.7 384 39.1
CARHR023830 Cardamine hirsuta HOM05D004907 ORTHO05D005707 2.0e-66 257.3 392 40.6
Thhalv10007835m.g Eutrema salsugineum HOM05D004907 ORTHO05D005707 2.7e-66 256.9 406 37.9
SGA_v2.0_scaffold63G21708 Striga asiatica HOM05D004907 ORTHO05D005707 2.3e-65 253.8 376 40.2
BraA09t39619Z Brassica rapa HOM05D004907 ORTHO05D005707 3.8e-65 253.1 397 39.0
Hund25371 Selenicereus undatus HOM05D004907 ORTHO05D005707 3.8e-65 253.1 369 38.2
Gohir.D05G315200 Gossypium hirsutum HOM05D004907 ORTHO05D005707 6.5e-65 252.3 238 52.5
Phvul.002G064500 Phaseolus vulgaris HOM05D004907 ORTHO05D005707 8.6e-65 251.9 249 49.8
GSVIVG01013786001 Vitis vinifera HOM05D004907 ORTHO05D005707 1.1e-64 251.5 274 44.9
AL1G37180 Arabidopsis lyrata HOM05D004907 ORTHO05D005707 1.9e-64 250.8 380 38.7
A09p41240 Brassica napus HOM05D004907 ORTHO05D005707 4.2e-64 249.6 397 39.0
C05p22690 Brassica napus HOM05D004907 ORTHO05D005707 4.2e-64 249.6 397 38.8
Ah.03g132850 Amaranthus hybridus HOM05D000168 ORTHO05D000811 7.2e-64 248.8 291 44.3
BolC5t30967H Brassica oleracea HOM05D004907 ORTHO05D005707 9.5e-64 248.4 397 38.8
ClCG08G017860 Citrullus lanatus HOM05D002061 ORTHO05D005707 9.5e-64 248.4 394 38.8
Sp1g20830 Schrenkiella parvula HOM05D004907 ORTHO05D005707 2.1e-63 247.3 391 38.9
AT1G23390 Arabidopsis thaliana HOM05D004907 ORTHO05D005707 3.6e-63 246.5 387 38.2
Peaxi162Scf00158g00003 Petunia axillaris HOM05D004907 ORTHO05D005707 8.0e-63 245.4 274 43.8
Aa31LG7G7420 Aethionema arabicum HOM05D004907 ORTHO05D005707 1.0e-62 245.0 381 39.1
PSO170G6868 Papaver somniferum HOM05D004907 ORTHO05D005707 1.0e-62 245.0 368 38.0
PSO441G0001 Papaver somniferum HOM05D004907 ORTHO05D005707 1.0e-62 245.0 368 38.0
BcaC05g26256 Brassica carinata HOM05D004907 ORTHO05D005707 1.8e-62 244.2 385 39.2
BcaB07g32334 Brassica carinata HOM05D004907 ORTHO05D005707 2.6e-61 240.4 400 38.2
CDE06G1150 Ceratophyllum demersum HOM05D004907 ORTHO05D005707 3.4e-61 240.0 321 38.9
PSO144G0054 Papaver somniferum HOM05D004907 ORTHO05D005707 8.3e-60 235.3 381 37.3
Carub.0001s2297 Capsella rubella HOM05D004907 ORTHO05D005707 1.8e-59 234.2 382 37.7
ATR1091G111 Amborella trichopoda HOM05D004907 ORTHO05D005707 1.6e-55 221.1 370 36.8
Lalb_Chr09g0326261 Lupinus albus HOM05D004907 ORTHO05D005707 1.3e-52 211.5 370 33.8
Oeu056728.1 Olea europaea HOM05D004907 ORTHO05D005707 1.6e-50 204.5 290 39.7
Actinidia08149 Actinidia chinensis HOM05D004907 ORTHO05D005707 1.9e-48 197.6 271 43.2
EL10Ac6g13709 Beta vulgaris HOM05D004907 ORTHO05D005707 1.0e-41 175.3 224 39.7
Nn3g16812 Nelumbo nucifera HOM05D004907 ORTHO05D005707 1.4e-38 164.9 170 50.0
PSO357G0455 Papaver somniferum HOM05D004907 ORTHO05D005707 5.2e-38 162.9 221 40.3
PSO478G2945 Papaver somniferum HOM05D004907 ORTHO05D005707 1.5e-37 161.4 187 47.6
COL.COLO4_24217 Corchorus olitorius HOM05D004907 ORTHO05D005707 1.3e-36 158.3 209 42.6
Zm00001eb155550 Zea mays HOM05D004907 ORTHO05D005707 3.5e-34 150.2 396 32.8
Os09g0292900 Oryza sativa ssp. japonica HOM05D004907 ORTHO05D005707 2.8e-31 140.6 394 32.5
Os02g0465600 Oryza sativa ssp. japonica HOM05D004907 ORTHO05D005707 8.4e-28 129.0 342 32.2
vmacro14766 Vaccinium macrocarpon HOM05D007853 ORTHO05D009873 1.4e-27 128.3 351 28.2
MD13G1280300 Malus domestica HOM05D004907 ORTHO05D005707 7.1e-27 125.9 197 37.1
HPP92_008048 Vanilla planifolia HOM05D004907 ORTHO05D005707 2.7e-26 124.0 372 30.9
MBI10_g16828_MAGBIO Magnolia biondii HOM05D007853 ORTHO05D009873 6.6e-25 119.4 347 27.4
unitig_8.g2924 Utricularia gibba HOM05D004907 ORTHO05D005707 4.3e-24 116.7 114 49.1
Actinidia09494 Actinidia chinensis HOM05D007853 ORTHO05D009873 5.6e-24 116.3 362 26.2
Oeu015462.1 Olea europaea HOM05D007853 ORTHO05D009873 7.3e-24 115.9 358 26.8
Actinidia23732 Actinidia chinensis HOM05D007853 ORTHO05D009873 2.8e-23 114.0 362 26.2
Cfa002555 Carpinus fangiana HOM05D007853 ORTHO05D009873 4.0e-22 110.2 359 27.9
FAN15G1839 Fragaria x ananassa HOM05D007853 ORTHO05D009873 4.0e-22 110.2 354 27.7
Hma1.2p1_1061F.1_g253350 Hydrangea macrophylla HOM05D007853 ORTHO05D009873 5.2e-22 109.8 345 28.7
FAN27G0897 Fragaria x ananassa HOM05D007853 ORTHO05D009873 2.6e-21 107.5 359 28.1
RcHm_v2.0_Chr6g0285141 Rosa chinensis HOM05D007853 ORTHO05D009873 3.4e-21 107.1 350 26.6
A07p07510 Brassica napus HOM05D007853 ORTHO05D009873 4.4e-21 106.7 345 28.7
BraA07t28542Z Brassica rapa HOM05D007853 ORTHO05D009873 4.4e-21 106.7 345 28.7
Dinv04666 Davidia involucrata HOM05D007853 ORTHO05D009873 9.9e-21 105.5 359 25.6
FAN24G3434 Fragaria x ananassa HOM05D007853 ORTHO05D009873 1.3e-20 105.1 356 27.2
CSS0040524 Camellia sinensis var. sinensis HOM05D007853 ORTHO05D009873 1.7e-20 104.8 346 25.4
CAN.G771.60 Capsicum annuum HOM05D007853 ORTHO05D009873 1.7e-20 104.8 350 27.4
FvH4_2g19330 Fragaria vesca HOM05D007853 ORTHO05D009873 1.7e-20 104.8 358 27.4
ClCG09G009130 Citrullus lanatus HOM05D007853 ORTHO05D009873 2.2e-20 104.4 348 27.9
Glyma.08G356100 Glycine max HOM05D007853 ORTHO05D009873 4.9e-20 103.2 352 26.4
Manes.12G041900 Manihot esculenta HOM05D007853 ORTHO05D009873 4.9e-20 103.2 353 26.1
Medtr0197s0070 Medicago truncatula HOM05D007853 ORTHO05D009873 4.9e-20 103.2 345 26.4
Medtr7g059040 Medicago truncatula HOM05D007853 ORTHO05D009873 4.9e-20 103.2 345 26.4
Mapoly0119s0021 Marchantia polymorpha HOM05D007853 ORTHO05D009873 6.4e-20 102.8 352 25.3
HanXRQChr01g0014671 Helianthus annuus HOM05D007853 ORTHO05D009873 8.4e-20 102.4 369 26.3
DCAR_000536 Daucus carota HOM05D007853 ORTHO05D009873 2.4e-19 100.9 349 28.4
TPR.G15291 Trifolium pratense HOM05D007853 ORTHO05D009873 2.4e-19 100.9 339 26.0
Cfa009183 Carpinus fangiana HOM05D004907 ORTHO05D005707 4.2e-19 100.1 138 38.4
Phvul.008G123400 Phaseolus vulgaris HOM05D007853 ORTHO05D009873 5.4e-19 99.8 352 26.1
ATR0787G102 Amborella trichopoda HOM05D007853 ORTHO05D009873 9.3e-19 99.0 347 26.2
Glyma.18G173200 Glycine max HOM05D007853 ORTHO05D009873 1.2e-18 98.6 353 26.3
Pp3c2_14180 Physcomitrium patens HOM05D007853 ORTHO05D009873 1.6e-18 98.2 375 24.5
Ca_07539_v3 Cicer arietinum L. HOM05D007853 ORTHO05D009873 2.1e-18 97.8 346 28.0
Psat3g143800 Pisum sativum HOM05D007853 ORTHO05D009873 6.0e-18 96.3 347 25.4
VMungo1383G0232 Vigna mungo HOM05D007853 ORTHO05D009873 1.0e-17 95.5 351 25.6
AL3G40490 Arabidopsis lyrata HOM05D007853 ORTHO05D009873 2.3e-17 94.4 350 25.4
MD05G1178400 Malus domestica HOM05D007853 ORTHO05D009873 3.9e-17 93.6 367 26.2
Sopen06g034930 Solanum pennellii HOM05D007853 ORTHO05D009873 3.9e-17 93.6 348 26.1
Os01g0704300 Oryza sativa ssp. japonica HOM05D004907 ORTHO05D005707 8.7e-17 92.4 265 29.8
unitig_8.g2923 Utricularia gibba HOM05D004907 ORTHO05D005707 8.7e-17 92.4 74 52.7
Pp3c10_6380 Physcomitrium patens HOM05D007853 ORTHO05D009873 2.5e-16 90.9 361 23.3
Solyc06g083550.1 Solanum lycopersicum HOM05D007853 ORTHO05D009873 2.8e-15 87.4 348 25.6
Nn2g13937 Nelumbo nucifera HOM05D004907 ORTHO05D005707 8.1e-15 85.9 77 51.9
TPR.G21504 Trifolium pratense HOM05D004907 ORTHO05D005707 8.1e-15 85.9 158 32.9
Pp3c3_33090 Physcomitrium patens HOM05D030659 ORTHO05D009385 8.4e-12 75.9 220 29.5
Nn2g13938 Nelumbo nucifera HOM05D004907 ORTHO05D005707 1.4e-11 75.1 99 38.4
Pp3c19_15800 Physcomitrium patens HOM05D007753 ORTHO05D009385 1.2e-10 72.0 332 24.1
Mapoly0115s0063 Marchantia polymorpha HOM05D007853 ORTHO05D009873 1.6e-07 61.6 298 24.5
ATR0561G071 Amborella trichopoda HOM05D005977 ORTHO05D004563 9.0e-06 55.8 295 24.4


User provided reference genes

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