Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR102G2710 Punica granatum HOM05D006300 ORTHO05D007623 7.9e-150 533.9 295 100.0
PGR102G2043 Punica granatum HOM05D006300 ORTHO05D007623 1.4e-138 496.5 302 93.4
Dinv30382 Davidia involucrata HOM05D006300 ORTHO05D007623 4.6e-73 278.9 196 72.4
Actinidia21757 Actinidia chinensis HOM05D006300 ORTHO05D007623 5.1e-72 275.4 182 74.7
QL05p012743 Quercus lobata HOM05D006300 ORTHO05D007623 1.5e-71 273.9 190 74.7
CiPaw.01G225300 Carya illinoinensis HOM05D006300 ORTHO05D007623 9.6e-71 271.2 196 71.4
Duzib192G0510 Durio zibethinus HOM05D006300 ORTHO05D007623 1.6e-70 270.4 189 72.0
GSVIVG01016850001 Vitis vinifera HOM05D006300 ORTHO05D007623 8.1e-70 268.1 177 77.4
CANSAT56G1450 Cannabis sativa HOM05D006300 ORTHO05D007623 3.1e-69 266.2 181 72.4
Thecc.06G111200 Theobroma cacao HOM05D006300 ORTHO05D007623 3.1e-69 266.2 173 76.3
Manes.11G026800 Manihot esculenta HOM05D006300 ORTHO05D007623 6.9e-69 265.0 171 76.6
Gohir.D03G056300 Gossypium hirsutum HOM05D006300 ORTHO05D007623 9.0e-69 264.6 175 74.9
Gorai.003G059300 Gossypium raimondii HOM05D006300 ORTHO05D007623 9.0e-69 264.6 175 74.9
COL.COLO4_30656 Corchorus olitorius HOM05D006300 ORTHO05D007623 7.6e-68 261.5 175 74.3
Manes.04G139300 Manihot esculenta HOM05D006300 ORTHO05D007623 1.3e-67 260.8 185 72.4
Lsat_1_v5_gn_4_95241 Lactuca sativa HOM05D006300 ORTHO05D007623 3.8e-67 259.2 187 69.5
CAN.G1389.16 Capsicum annuum HOM05D006300 ORTHO05D007623 4.9e-67 258.8 208 64.9
Sopen03g040370 Solanum pennellii HOM05D006300 ORTHO05D007623 4.9e-67 258.8 206 65.5
Solyc03g121560.3 Solanum lycopersicum HOM05D006300 ORTHO05D007623 8.4e-67 258.1 203 66.5
TAR636G0696 Trochodendron aralioides HOM05D006300 ORTHO05D007623 1.1e-66 257.7 177 74.0
Gohir.A02G115200 Gossypium hirsutum HOM05D006300 ORTHO05D007623 1.4e-66 257.3 175 72.6
Duzib160G0060 Durio zibethinus HOM05D006300 ORTHO05D007623 2.4e-66 256.5 171 74.3
Potri.003G038600 Populus trichocarpa HOM05D006300 ORTHO05D007623 2.4e-66 256.5 200 67.0
Rhsim08G0233100 Rhododendron simsii HOM05D006300 ORTHO05D007623 2.4e-66 256.5 174 74.7
MD17G1174400 Malus domestica HOM05D006300 ORTHO05D007623 4.2e-66 255.8 204 67.6
Gohir.D10G061000 Gossypium hirsutum HOM05D006300 ORTHO05D007623 5.4e-66 255.4 177 71.2
AT1G17665 Arabidopsis thaliana HOM05D006300 ORTHO05D007623 1.6e-65 253.8 198 64.1
Prupe.3G050100 Prunus persica HOM05D006300 ORTHO05D007623 2.7e-65 253.1 177 74.6
TAR624G0799 Trochodendron aralioides HOM05D006300 ORTHO05D007623 2.7e-65 253.1 177 72.3
Gohir.A10G059500 Gossypium hirsutum HOM05D006300 ORTHO05D007623 3.5e-65 252.7 177 70.6
HanXRQChr09g0276431 Helianthus annuus HOM05D006300 ORTHO05D007623 3.5e-65 252.7 176 73.3
TAR383G0464 Trochodendron aralioides HOM05D006300 ORTHO05D007623 7.9e-65 251.5 176 72.2
BcaB07g34023 Brassica carinata HOM05D006300 ORTHO05D007623 8.7e-64 248.1 186 67.2
THA.LOC104812213 Tarenaya hassleriana HOM05D006300 ORTHO05D007623 1.5e-63 247.3 324 49.7
Duzib235G0903 Durio zibethinus HOM05D006300 ORTHO05D007623 1.9e-63 246.9 175 71.4
BcaC05g25688 Brassica carinata HOM05D006300 ORTHO05D007623 2.5e-63 246.5 186 66.7
C05p16080 Brassica napus HOM05D006300 ORTHO05D007623 2.5e-63 246.5 186 66.7
BolC5t30308H Brassica oleracea HOM05D006300 ORTHO05D007623 2.5e-63 246.5 186 66.7
Dinv37916 Davidia involucrata HOM05D006300 ORTHO05D007623 2.5e-63 246.5 302 51.7
Nn6g35476 Nelumbo nucifera HOM05D006300 ORTHO05D007623 2.5e-63 246.5 178 70.8
Thhalv10008108m.g Eutrema salsugineum HOM05D006300 ORTHO05D007623 4.3e-63 245.7 199 63.3
Carub.0001s1740 Capsella rubella HOM05D006300 ORTHO05D007623 9.6e-63 244.6 204 62.7
Gorai.011G065200 Gossypium raimondii HOM05D006300 ORTHO05D007623 1.3e-62 244.2 170 70.6
Sp1g15770 Schrenkiella parvula HOM05D006300 ORTHO05D007623 1.3e-62 244.2 199 62.3
CARHR018270 Cardamine hirsuta HOM05D006300 ORTHO05D007623 2.1e-62 243.4 198 63.1
RcHm_v2.0_Chr2g0142971 Rosa chinensis HOM05D006300 ORTHO05D007623 2.1e-62 243.4 180 70.0
CiPaw.02G140400 Carya illinoinensis HOM05D006300 ORTHO05D007623 3.7e-62 242.7 195 66.2
AL1G29990 Arabidopsis lyrata HOM05D006300 ORTHO05D007623 1.1e-61 241.1 301 54.2
Ah.15g094170 Amaranthus hybridus HOM05D006300 ORTHO05D007623 1.4e-61 240.7 171 70.8
vmacro18787 Vaccinium macrocarpon HOM05D006300 ORTHO05D007623 1.4e-61 240.7 162 74.7
Nn8g38867 Nelumbo nucifera HOM05D006300 ORTHO05D007623 3.1e-61 239.6 179 68.7
BraA06t24508Z Brassica rapa HOM05D006300 ORTHO05D007623 4.0e-61 239.2 184 67.9
A06p13560 Brassica napus HOM05D006300 ORTHO05D007623 5.3e-61 238.8 168 70.8
FvH4_6g33270 Fragaria vesca HOM05D006300 ORTHO05D007623 6.9e-61 238.4 197 66.0
FAN14G0371 Fragaria x ananassa HOM05D006300 ORTHO05D007623 6.9e-61 238.4 197 66.0
SalBow6G0902 Salvia bowleyana HOM05D006300 ORTHO05D007623 6.9e-61 238.4 164 73.8
Migut.I01022 Erythranthe guttata HOM05D006300 ORTHO05D007623 1.2e-60 237.7 174 69.0
CsaV3_7G034830 Cucumis sativus L. HOM05D006300 ORTHO05D007623 4.5e-60 235.7 195 62.6
Sabra03G0025100 Salix brachista HOM05D006300 ORTHO05D007623 7.6e-60 235.0 242 56.2
MELO3C024394.2 Cucumis melo HOM05D006300 ORTHO05D007623 9.9e-60 234.6 195 62.6
MBI01_g01269_MAGBIO Magnolia biondii HOM05D006300 ORTHO05D007623 2.9e-59 233.0 174 67.8
Hund20857 Selenicereus undatus HOM05D006300 ORTHO05D007623 3.8e-59 232.6 228 56.6
ECA232G1041 Erigeron canadensis HOM05D000140 ORTHO05D000087 1.4e-58 230.7 172 69.8
arahy.Tifrunner.gnm1.ann1.X9C73S Arachis hypogaea HOM05D006300 ORTHO05D007623 1.9e-58 230.3 168 72.0
Cc04_g01980 Coffea canephora HOM05D006300 ORTHO05D007623 7.1e-58 228.4 171 66.1
MBI04_g34125_MAGBIO Magnolia biondii HOM05D006300 ORTHO05D007623 1.2e-57 227.6 166 69.9
Aa31LG7G2500 Aethionema arabicum HOM05D006300 ORTHO05D007623 2.7e-57 226.5 320 48.8
MSTRG.10986 Avicennia marina HOM05D006300 ORTHO05D007623 2.7e-57 226.5 315 48.6
Haze_15947 Corylus avellana HOM05D006300 ORTHO05D007623 1.3e-56 224.2 224 57.1
Nitab4.5_0001295g0030 Nicotiana tabacum HOM05D006300 ORTHO05D007623 1.8e-56 223.8 155 72.3
PSO210G0359 Papaver somniferum HOM05D006300 ORTHO05D007623 2.3e-56 223.4 177 64.4
FAN05G1138 Fragaria x ananassa HOM05D006300 ORTHO05D007623 3.0e-56 223.0 185 65.4
AUR62038132 Chenopodium quinoa HOM05D000073 ORTHO05D000033 3.9e-56 222.6 161 68.9
PSO210G2046 Papaver somniferum HOM05D006300 ORTHO05D007623 6.7e-56 221.9 179 64.2
Aqoxy7G01215 Aquilegia oxysepala HOM05D006300 ORTHO05D007623 1.1e-55 221.1 194 61.9
FAN02G1261 Fragaria x ananassa HOM05D006300 ORTHO05D007623 3.3e-55 219.5 185 64.9
Glyma.15G023900 Glycine max HOM05D006300 ORTHO05D007623 9.6e-55 218.0 190 64.2
DCAR_007620 Daucus carota HOM05D006300 ORTHO05D007623 2.1e-54 216.9 292 50.0
Lalb_Chr24g0396361 Lupinus albus HOM05D006300 ORTHO05D007623 2.1e-54 216.9 194 62.9
arahy.Tifrunner.gnm1.ann1.F4I7X2 Arachis hypogaea HOM05D006300 ORTHO05D007623 3.7e-54 216.1 318 47.5
CDE04G2687 Ceratophyllum demersum HOM05D006300 ORTHO05D007623 5.3e-53 212.2 165 68.5
Glyma.13G350600 Glycine max HOM05D006300 ORTHO05D007623 5.3e-53 212.2 179 65.4
Medtr2g100100 Medicago truncatula HOM05D006300 ORTHO05D007623 9.0e-53 211.5 306 50.7
CDE06G2767 Ceratophyllum demersum HOM05D006300 ORTHO05D007623 2.0e-52 210.3 174 63.8
Phvul.005G159900 Phaseolus vulgaris HOM05D006300 ORTHO05D007623 3.4e-52 209.5 169 67.5
Psat4g199680 Pisum sativum HOM05D006300 ORTHO05D007623 7.6e-52 208.4 175 64.6
Lj3g0013508 Lotus japonicus HOM05D006300 ORTHO05D007623 3.2e-50 203.0 282 50.4
Ciclev10025783m.g Citrus clementina HOM05D006300 ORTHO05D007623 5.5e-50 202.2 174 60.9
TPR.G6530 Trifolium pratense HOM05D006300 ORTHO05D007623 2.1e-49 200.3 284 51.1
Medtr8g016260 Medicago truncatula HOM05D006300 ORTHO05D007623 6.1e-49 198.7 298 45.0
VMungo1080G1020 Vigna mungo HOM05D006300 ORTHO05D007623 1.3e-48 197.6 157 68.8
SGA_v2.0_scaffold127G34049 Striga asiatica HOM05D006300 ORTHO05D007623 1.8e-48 197.2 178 60.1
Atru.chr1.3720 Acer truncatum HOM05D001008 ORTHO05D003146 6.7e-48 195.3 165 62.4
Mapoly0001s0383 Marchantia polymorpha HOM05D006300 ORTHO05D007623 8.7e-48 194.9 210 53.3
Peaxi162Scf00038g01529 Petunia axillaris HOM05D006300 ORTHO05D007623 8.7e-48 194.9 156 66.0
Nitab4.5_0007429g0010 Nicotiana tabacum HOM05D006300 ORTHO05D007623 7.4e-47 191.8 123 75.6
FAN09G0301 Fragaria x ananassa HOM05D006300 ORTHO05D007623 2.4e-45 186.8 233 53.6
ClCG09G000650 Citrullus lanatus HOM05D006300 ORTHO05D007623 9.0e-45 184.9 146 63.7
Pp3c7_7340 Physcomitrium patens HOM05D006300 ORTHO05D007623 9.0e-45 184.9 168 60.1
AagrBONN_evm.TU.Sc2ySwM_228.500 Anthoceros agrestis HOM05D006300 ORTHO05D007623 1.5e-44 184.1 161 60.2
Ca_28052_v3 Cicer arietinum L. HOM05D006300 ORTHO05D007623 7.9e-41 171.8 148 62.8
Ca_30533_v3 Cicer arietinum L. HOM05D006300 ORTHO05D007623 7.9e-41 171.8 148 62.8
Oeu039964.1 Olea europaea HOM05D006300 ORTHO05D007623 1.4e-40 171.0 124 69.4
ATR0026G017 Amborella trichopoda HOM05D006300 ORTHO05D007623 2.2e-38 163.7 342 37.4
Cpa.g.sc25.55 Carica papaya HOM05D006300 ORTHO05D007623 5.9e-36 155.6 112 69.6
TPR.G7922 Trifolium pratense HOM05D006300 ORTHO05D007623 1.8e-32 144.1 119 63.9
PGSC0003DMG400002589 Solanum tuberosum HOM05D006300 ORTHO05D007623 1.3e-30 137.9 106 64.2
HPP92_003967 Vanilla planifolia HOM05D006300 ORTHO05D007623 5.3e-29 132.5 124 58.9
arahy.Tifrunner.gnm1.ann1.046NH9 Arachis hypogaea HOM05D006300 ORTHO05D007623 2.0e-23 114.0 104 61.5
Zm00001eb337890 Zea mays HOM05D006300 ORTHO05D007623 5.7e-23 112.5 168 40.5
Os01g0197400 Oryza sativa ssp. japonica HOM05D006300 ORTHO05D007623 7.4e-23 112.1 169 42.0
COL.COLO4_30657 Corchorus olitorius HOM05D001008 ORTHO05D007623 1.3e-22 111.3 71 76.1
CSS0024626 Camellia sinensis var. sinensis HOM05D006300 ORTHO05D007623 2.4e-21 107.1 64 82.8
arahy.Tifrunner.gnm1.ann1.Z85M5C Arachis hypogaea HOM05D006300 ORTHO05D007623 3.6e-17 93.2 104 52.9
arahy.Tifrunner.gnm1.ann1.RJ4DBV Arachis hypogaea HOM05D006300 ORTHO05D007623 2.8e-14 83.6 73 63.0
Cpa.g.sc25.56 Carica papaya HOM05D006300 ORTHO05D007623 2.7e-12 77.0 76 53.9
Lj9P518T56 Lonicera japonica HOM05D006300 ORTHO05D007623 1.7e-11 74.3 44 77.3
Sc15g0000130 Simmondsia chinensis HOM05D006300 ORTHO05D007623 3.8e-11 73.2 50 68.0
CSS0019345 Camellia sinensis var. sinensis HOM05D006300 ORTHO05D007623 4.2e-10 69.7 171 36.3
Sed0006903 Sechium edule HOM05D006300 ORTHO05D007623 4.2e-10 69.7 81 48.1
MBI06_g20962_MAGBIO Magnolia biondii HOM05D006300 ORTHO05D007623 6.8e-08 62.4 40 72.5
arahy.Tifrunner.gnm1.ann1.IE7N3Z Arachis hypogaea HOM05D006300 ORTHO05D007623 1.2e-07 61.6 107 38.3
MBI07_g16251_MAGBIO Magnolia biondii HOM05D001001 ORTHO05D000808 2.0e-07 60.8 79 45.6
MBI09_g03017_MAGBIO Magnolia biondii HOM05D006300 ORTHO05D007623 2.6e-07 60.5 39 71.8
arahy.Tifrunner.gnm1.ann1.24L57E Arachis hypogaea HOM05D006300 ORTHO05D007623 3.7e-06 56.6 76 48.7
Oeu007005.1 Olea europaea HOM05D006300 ORTHO05D007623 4.8e-06 56.2 167 32.9


User provided reference genes

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