Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR102G2702 Punica granatum HOM05D007847 ORTHO05D009946 4.8e-179 630.9 295 100.0
Haze_03966 Corylus avellana HOM05D007847 ORTHO05D009946 1.9e-106 389.8 301 58.1
Dinv26974 Davidia involucrata HOM05D007847 ORTHO05D009946 1.9e-106 389.8 294 59.2
CiPaw.08G148900 Carya illinoinensis HOM05D007847 ORTHO05D009946 3.2e-106 389.0 293 58.4
QL06p038286 Quercus lobata HOM05D007847 ORTHO05D009946 4.6e-105 385.2 292 58.2
TWI77G0524 Tripterygium wilfordii HOM05D007847 ORTHO05D009946 1.0e-104 384.0 293 58.0
RcHm_v2.0_Chr2g0109231 Rosa chinensis HOM05D007847 ORTHO05D009946 3.9e-104 382.1 293 60.1
Manes.13G107200 Manihot esculenta HOM05D007847 ORTHO05D009946 4.3e-103 378.6 293 56.3
TAR381G1308 Trochodendron aralioides HOM05D007847 ORTHO05D009946 4.3e-103 378.6 289 60.2
Cc07_g07550 Coffea canephora HOM05D007847 ORTHO05D009946 2.8e-102 375.9 292 54.1
Gorai.003G033500 Gossypium raimondii HOM05D007847 ORTHO05D009946 6.2e-102 374.8 292 58.6
MD02G1192700 Malus domestica HOM05D007847 ORTHO05D009946 6.8e-101 371.3 292 56.8
Ciclev10026132m.g Citrus clementina HOM05D007847 ORTHO05D009946 2.6e-100 369.4 289 56.7
Duzib264G0083 Durio zibethinus HOM05D007847 ORTHO05D009946 5.8e-100 368.2 290 57.2
FvH4_1g18540 Fragaria vesca HOM05D007847 ORTHO05D009946 1.7e-99 366.7 293 57.0
CSS0008963 Camellia sinensis var. sinensis HOM05D007847 ORTHO05D009946 2.2e-99 366.3 286 57.7
Gohir.D03G032000 Gossypium hirsutum HOM05D007847 ORTHO05D009946 2.2e-99 366.3 291 57.7
CSS0006637 Camellia sinensis var. sinensis HOM05D007847 ORTHO05D009946 3.7e-99 365.5 286 57.7
FAN19G2742 Fragaria x ananassa HOM05D007847 ORTHO05D009946 1.1e-98 364.0 295 57.3
Nn5g30695 Nelumbo nucifera HOM05D007847 ORTHO05D009946 1.1e-98 364.0 289 54.7
Actinidia11949 Actinidia chinensis HOM05D007847 ORTHO05D009946 3.2e-98 362.5 292 56.2
FAN23G2885 Fragaria x ananassa HOM05D007847 ORTHO05D009946 5.4e-98 361.7 301 55.5
CANSAT01G1865 Cannabis sativa HOM05D007847 ORTHO05D009946 4.6e-97 358.6 293 55.3
Sopen03g007680 Solanum pennellii HOM05D007847 ORTHO05D009946 7.8e-97 357.8 292 54.5
Migut.H00314 Erythranthe guttata HOM05D007847 ORTHO05D009946 1.7e-96 356.7 289 53.6
C03p59920 Brassica napus HOM05D007847 ORTHO05D009946 2.3e-96 356.3 295 54.2
BolC3t18257H Brassica oleracea HOM05D007847 ORTHO05D009946 2.3e-96 356.3 295 54.2
PSO541G2530 Papaver somniferum HOM05D007847 ORTHO05D009946 1.1e-95 354.0 287 54.7
FAN28G0215 Fragaria x ananassa HOM05D007847 ORTHO05D009946 1.5e-95 353.6 303 54.8
THA.LOC104819277 Tarenaya hassleriana HOM05D007847 ORTHO05D009946 1.5e-95 353.6 298 52.3
Aqoxy6G02972 Aquilegia oxysepala HOM05D007847 ORTHO05D009946 5.6e-95 351.7 290 54.8
BraA06t26189Z Brassica rapa HOM05D007847 ORTHO05D009946 7.3e-95 351.3 293 54.3
Thecc.01G078900 Theobroma cacao HOM05D007847 ORTHO05D009946 2.8e-94 349.4 294 54.4
AL8G43460 Arabidopsis lyrata HOM05D007847 ORTHO05D009946 3.6e-94 349.0 297 53.2
Solyc03g043870.3 Solanum lycopersicum HOM05D007847 ORTHO05D009946 3.6e-94 349.0 285 54.4
PSO675G2957 Papaver somniferum HOM05D007847 ORTHO05D009946 1.1e-93 347.4 287 53.7
Thhalv10004606m.g Eutrema salsugineum HOM05D007847 ORTHO05D009946 3.1e-93 345.9 297 52.9
A06p32610 Brassica napus HOM05D007847 ORTHO05D009946 5.2e-93 345.1 293 53.2
Sabra07G0006500 Salix brachista HOM05D007847 ORTHO05D009946 4.4e-92 342.0 273 53.5
ECA238G4198 Erigeron canadensis HOM05D007847 ORTHO05D009946 1.9e-90 336.7 281 52.0
Carub.0008s2664 Capsella rubella HOM05D007847 ORTHO05D009946 5.4e-90 335.1 290 52.4
Gohir.A02G148500 Gossypium hirsutum HOM05D007847 ORTHO05D009946 5.4e-90 335.1 292 54.8
HanXRQChr14g0447671 Helianthus annuus HOM05D007847 ORTHO05D009946 3.5e-89 332.4 278 51.4
DCAR_010781 Daucus carota HOM05D007847 ORTHO05D009946 2.3e-88 329.7 268 53.4
Sc22g0002130 Simmondsia chinensis HOM05D007847 ORTHO05D009946 1.5e-87 327.0 282 52.1
Peaxi162Scf00118g01311 Petunia axillaris HOM05D007847 ORTHO05D009946 1.9e-87 326.6 275 53.1
BcaC01g02838 Brassica carinata HOM05D007847 ORTHO05D009946 2.5e-87 326.2 293 51.5
Cfa006792 Carpinus fangiana HOM05D007847 ORTHO05D009946 8.1e-86 321.2 238 58.8
Prupe.6G213700 Prunus persica HOM05D007847 ORTHO05D009946 1.8e-85 320.1 279 52.7
MBI16_g08505_MAGBIO Magnolia biondii HOM05D007847 ORTHO05D009946 2.4e-85 319.7 279 52.0
Atru.chr3.1082 Acer truncatum HOM05D007847 ORTHO05D009946 4.0e-85 318.9 245 58.8
Oeu013362.2 Olea europaea HOM05D007847 ORTHO05D009946 2.2e-83 313.2 258 51.9
ATR0629G045 Amborella trichopoda HOM05D007847 ORTHO05D009946 2.9e-83 312.8 287 48.4
Zm00001eb215660 Zea mays HOM05D007847 ORTHO05D009946 3.8e-83 312.4 277 49.8
COL.COLO4_11640 Corchorus olitorius HOM05D007847 ORTHO05D009946 1.9e-82 310.1 271 52.8
Nitab4.5_0005210g0020 Nicotiana tabacum HOM05D007847 ORTHO05D009946 7.8e-81 304.7 276 51.8
Eucgr.F02827 Eucalyptus grandis HOM05D007847 ORTHO05D009946 2.5e-79 299.7 288 49.0
Potri.007G008300 Populus trichocarpa HOM05D007847 ORTHO05D009946 9.0e-77 291.2 224 53.6
FAN26G2270 Fragaria x ananassa HOM05D007847 ORTHO05D009946 1.2e-76 290.8 323 46.7
Os03g0726900 Oryza sativa ssp. japonica HOM05D007847 ORTHO05D009946 2.6e-76 289.7 278 46.0
SEGI_26913 Sequoiadendron giganteum HOM05D007847 ORTHO05D009946 4.8e-70 268.9 273 44.3
Nitab4.5_0002639g0020 Nicotiana tabacum HOM05D007847 ORTHO05D009946 3.8e-67 259.2 243 49.8
MSTRG.2798 Avicennia marina HOM05D007847 ORTHO05D009946 9.3e-66 254.6 224 48.7
AT5G65740 Arabidopsis thaliana HOM05D007847 ORTHO05D009946 3.9e-64 249.2 213 52.1
Cpa.g.sc129.54 Carica papaya HOM05D007847 ORTHO05D009946 1.2e-60 237.7 229 48.9
CARHR279740 Cardamine hirsuta HOM05D007847 ORTHO05D009946 1.5e-60 237.3 224 47.8
AagrBONN_evm.TU.Sc2ySwM_362.720 Anthoceros agrestis HOM05D007847 ORTHO05D009946 1.7e-59 233.8 296 38.5
Mapoly0084s0053 Marchantia polymorpha HOM05D007847 ORTHO05D009946 2.2e-59 233.4 278 38.8
Pp3c23_15090 Physcomitrium patens HOM05D007847 ORTHO05D009946 2.7e-57 226.5 272 38.2
Lj4C169G8 Lonicera japonica HOM05D007847 ORTHO05D009946 4.3e-55 219.2 288 39.6
HPP92_003710 Vanilla planifolia HOM05D007847 ORTHO05D009946 3.1e-53 213.0 228 46.9
Lsat_1_v5_gn_2_80401 Lactuca sativa HOM05D007847 ORTHO05D009946 4.5e-52 209.1 182 48.9
SGA_v2.0_scaffold121G33081 Striga asiatica HOM05D007847 ORTHO05D009946 5.8e-52 208.8 370 32.2
PGSC0003DMG400017101 Solanum tuberosum HOM05D007847 ORTHO05D009946 2.0e-44 183.7 228 41.2
MD15G1303100 Malus domestica HOM05D007847 ORTHO05D009946 1.6e-33 147.5 138 52.9
MD15G1303200 Malus domestica HOM05D007847 ORTHO05D009946 1.4e-32 144.4 108 60.2
CAN.G82.24 Capsicum annuum HOM05D007847 ORTHO05D009946 4.5e-28 129.4 109 52.3
Cre03.g204801 Chlamydomonas reinhardtii HOM05D007847 ORTHO05D009946 1.2e-20 104.8 368 23.9
Sp2g28840 Schrenkiella parvula HOM05D007847 ORTHO05D009946 1.0e-19 101.7 66 63.6
CDE02G3555 Ceratophyllum demersum HOM05D007847 ORTHO05D009946 5.2e-16 89.4 66 60.6
Actinidia36408 Actinidia chinensis HOM05D007847 ORTHO05D009946 2.8e-14 83.6 176 30.1


User provided reference genes

Program Settings