Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR102G1639 Punica granatum HOM05D006328 ORTHO05D007721 3.6e-146 521.5 263 100.0
Eucgr.B03625 Eucalyptus grandis HOM05D006328 ORTHO05D007721 3.1e-97 359.0 229 80.8
Cpa.g.sc119.81 Carica papaya HOM05D006328 ORTHO05D007721 3.6e-93 345.5 231 75.8
Ciclev10016391m.g Citrus clementina HOM05D006328 ORTHO05D007721 6.7e-92 341.3 255 73.3
Manes.03G088400 Manihot esculenta HOM05D006328 ORTHO05D007721 8.8e-92 340.9 258 70.9
Potri.003G216700 Populus trichocarpa HOM05D006328 ORTHO05D007721 1.5e-91 340.1 252 72.6
FAN16G1952 Fragaria x ananassa HOM05D006328 ORTHO05D007721 3.3e-91 339.0 263 69.6
CiPaw.13G173100 Carya illinoinensis HOM05D006328 ORTHO05D007721 5.7e-91 338.2 248 73.8
Prupe.1G537200 Prunus persica HOM05D006328 ORTHO05D007721 3.7e-90 335.5 271 68.6
FvH4_3g44830 Fragaria vesca HOM05D006328 ORTHO05D007721 4.8e-90 335.1 268 69.0
FAN11G1794 Fragaria x ananassa HOM05D006328 ORTHO05D007721 6.3e-90 334.7 268 69.0
Sabra03G0161800 Salix brachista HOM05D006328 ORTHO05D007721 8.2e-90 334.3 271 66.8
RcHm_v2.0_Chr5g0081531 Rosa chinensis HOM05D006328 ORTHO05D007721 1.4e-89 333.6 268 69.0
ClCG08G005770 Citrullus lanatus HOM05D006328 ORTHO05D007721 4.1e-89 332.0 259 69.1
EL10Ac4g10350 Beta vulgaris HOM05D006328 ORTHO05D007721 7.0e-89 331.3 264 67.4
FAN25G2838 Fragaria x ananassa HOM05D006328 ORTHO05D007721 7.0e-89 331.3 269 67.7
THA.LOC104811061 Tarenaya hassleriana HOM05D006328 ORTHO05D007721 1.2e-88 330.5 258 69.8
Thecc.09G213100 Theobroma cacao HOM05D006328 ORTHO05D007721 1.2e-88 330.5 267 67.0
Atru.chr3.2259 Acer truncatum HOM05D006328 ORTHO05D007721 3.5e-88 328.9 255 72.2
Atru.chr3.2265 Acer truncatum HOM05D006328 ORTHO05D007721 3.5e-88 328.9 255 72.2
Dinv13426 Davidia involucrata HOM05D006328 ORTHO05D007721 5.9e-88 328.2 239 73.2
FAN21G0799 Fragaria x ananassa HOM05D006328 ORTHO05D007721 7.7e-88 327.8 278 66.2
QL01p007982 Quercus lobata HOM05D006328 ORTHO05D007721 7.7e-88 327.8 257 68.1
CANSAT11G2432 Cannabis sativa HOM05D006328 ORTHO05D007721 1.0e-87 327.4 277 64.3
Peaxi162Scf00100g00716 Petunia axillaris HOM05D006328 ORTHO05D007721 1.7e-87 326.6 240 71.7
TAR633G0950 Trochodendron aralioides HOM05D006328 ORTHO05D007721 2.2e-87 326.2 249 69.5
Nitab4.5_0011368g0030 Nicotiana tabacum HOM05D006328 ORTHO05D007721 2.9e-87 325.9 260 66.9
MELO3C015648.2 Cucumis melo HOM05D006328 ORTHO05D007721 3.8e-87 325.5 258 67.8
CsaV3_1G042230 Cucumis sativus L. HOM05D006328 ORTHO05D007721 3.8e-87 325.5 258 67.8
TAR633G1956 Trochodendron aralioides HOM05D006328 ORTHO05D007721 3.8e-87 325.5 254 67.7
Gohir.D13G217500 Gossypium hirsutum HOM05D006328 ORTHO05D007721 5.0e-87 325.1 265 67.9
COL.COLO4_34990 Corchorus olitorius HOM05D001240 ORTHO05D002450 6.5e-87 324.7 188 84.0
Gorai.013G248000 Gossypium raimondii HOM05D006328 ORTHO05D007721 6.5e-87 324.7 265 67.9
Nitab4.5_0000775g0140 Nicotiana tabacum HOM05D006328 ORTHO05D007721 6.5e-87 324.7 239 70.7
ClCG03G013990 Citrullus lanatus HOM05D006328 ORTHO05D007721 1.5e-86 323.6 259 67.6
AUR62019196 Chenopodium quinoa HOM05D006328 ORTHO05D007721 1.9e-86 323.2 258 68.6
Gohir.A13G213700 Gossypium hirsutum HOM05D006328 ORTHO05D007721 1.9e-86 323.2 265 67.5
Sed0015335 Sechium edule HOM05D006328 ORTHO05D007721 4.2e-86 322.0 259 67.2
Haze_22985 Corylus avellana HOM05D006328 ORTHO05D007721 1.6e-85 320.1 312 59.3
Nn7g35935 Nelumbo nucifera HOM05D006328 ORTHO05D007721 1.6e-85 320.1 263 65.8
GSVIVG01025405001 Vitis vinifera HOM05D006328 ORTHO05D007721 1.6e-85 320.1 238 71.8
PGSC0003DMG400032183 Solanum tuberosum HOM05D006328 ORTHO05D007721 2.1e-85 319.7 262 66.0
Lj1A460T3 Lonicera japonica HOM05D006328 ORTHO05D007721 2.7e-85 319.3 241 70.1
CARHR153570 Cardamine hirsuta HOM05D006328 ORTHO05D007721 3.6e-85 318.9 239 69.5
Solyc01g006020.4 Solanum lycopersicum HOM05D006328 ORTHO05D007721 3.6e-85 318.9 266 65.0
Sopen01g002030 Solanum pennellii HOM05D006328 ORTHO05D007721 3.6e-85 318.9 262 66.0
TWI60G0846 Tripterygium wilfordii HOM05D006328 ORTHO05D007721 6.1e-85 318.2 248 67.7
AL5G20530 Arabidopsis lyrata HOM05D006328 ORTHO05D007721 1.4e-84 317.0 247 67.6
Hund07572 Selenicereus undatus HOM05D006328 ORTHO05D007721 2.3e-84 316.2 257 67.7
MD08G1205200 Malus domestica HOM05D006328 ORTHO05D007721 3.0e-84 315.8 271 64.9
Actinidia16265 Actinidia chinensis HOM05D006328 ORTHO05D007721 4.0e-84 315.5 267 65.5
AT3G32930 Arabidopsis thaliana HOM05D006328 ORTHO05D007721 6.7e-84 314.7 200 77.0
Glyma.08G315600 Glycine max HOM05D006328 ORTHO05D007721 1.2e-83 313.9 243 68.7
MBI13_g29633_MAGBIO Magnolia biondii HOM05D006328 ORTHO05D007721 2.0e-83 313.2 188 79.8
Phvul.006G042800 Phaseolus vulgaris HOM05D006328 ORTHO05D007721 2.0e-83 313.2 249 67.9
CAN.G158.4 Capsicum annuum HOM05D006328 ORTHO05D007721 2.6e-83 312.8 264 64.4
BcaC04g23807 Brassica carinata HOM05D006328 ORTHO05D007721 3.3e-83 312.4 236 69.5
C09p04470 Brassica napus HOM05D006328 ORTHO05D007721 3.3e-83 312.4 236 69.5
BolC9t53377H Brassica oleracea HOM05D006328 ORTHO05D007721 3.3e-83 312.4 236 69.5
Carub.0003s3500 Capsella rubella HOM05D006328 ORTHO05D007721 3.3e-83 312.4 239 66.9
BraA09t36060Z Brassica rapa HOM05D006328 ORTHO05D007721 7.5e-83 311.2 239 68.6
Lalb_Chr10g0091951 Lupinus albus HOM05D006328 ORTHO05D007721 9.7e-83 310.8 228 71.1
Glyma.18G097300 Glycine max HOM05D006328 ORTHO05D007721 1.3e-82 310.5 247 68.4
Manes.15G105600 Manihot esculenta HOM05D006328 ORTHO05D007721 1.3e-82 310.5 263 67.3
A09p04230 Brassica napus HOM05D006328 ORTHO05D007721 1.7e-82 310.1 238 68.9
CSS0031266 Camellia sinensis var. sinensis HOM05D006328 ORTHO05D007721 1.7e-82 310.1 264 64.4
Hma1.2p1_0062F.1_g034170 Hydrangea macrophylla HOM05D006328 ORTHO05D007721 1.7e-82 310.1 187 81.8
A06p39560 Brassica napus HOM05D006328 ORTHO05D007721 2.2e-82 309.7 205 75.6
BraA06t26871Z Brassica rapa HOM05D006328 ORTHO05D007721 2.2e-82 309.7 205 75.6
Lj6g0000665 Lotus japonicus HOM05D006328 ORTHO05D007721 2.2e-82 309.7 242 68.6
Lsat_1_v5_gn_2_101560 Lactuca sativa HOM05D006328 ORTHO05D007721 2.8e-82 309.3 257 63.0
BcaB04g19533 Brassica carinata HOM05D006328 ORTHO05D007721 6.3e-82 308.1 205 75.6
Sp2g18300 Schrenkiella parvula HOM05D006328 ORTHO05D007721 1.1e-81 307.4 204 75.5
ATR0598G038 Amborella trichopoda HOM05D006328 ORTHO05D007721 3.1e-81 305.8 242 66.5
C07p38710 Brassica napus HOM05D006328 ORTHO05D007721 5.3e-81 305.1 234 67.9
Migut.D02532 Erythranthe guttata HOM05D006328 ORTHO05D007721 5.3e-81 305.1 250 66.4
ECA238G4721 Erigeron canadensis HOM05D006328 ORTHO05D007721 7.0e-81 304.7 239 64.9
Thhalv10004835m.g Eutrema salsugineum HOM05D006328 ORTHO05D007721 1.2e-80 303.9 202 75.2
MSTRG.18860 Avicennia marina HOM05D006328 ORTHO05D007721 2.0e-80 303.1 261 63.6
Oeu029372.1 Olea europaea HOM05D006328 ORTHO05D007721 2.7e-80 302.8 260 62.7
HanXRQChr07g0196761 Helianthus annuus HOM05D006328 ORTHO05D007721 4.5e-80 302.0 262 63.0
TPR.G19330 Trifolium pratense HOM05D006328 ORTHO05D007721 7.7e-80 301.2 255 63.5
Aa31LG4G12590 Aethionema arabicum HOM05D006328 ORTHO05D007721 1.3e-79 300.4 198 76.3
SGA_v2.0_scaffold6G03437 Striga asiatica HOM05D006328 ORTHO05D007721 6.5e-79 298.1 204 75.0
arahy.Tifrunner.gnm1.ann1.6HD85A Arachis hypogaea HOM05D006328 ORTHO05D007721 8.5e-79 297.7 252 65.1
HPP92_009650 Vanilla planifolia HOM05D006328 ORTHO05D007721 8.5e-79 297.7 189 76.7
SalBow6G6014 Salvia bowleyana HOM05D006328 ORTHO05D007721 2.5e-78 296.2 187 77.5
Cc01_g01550 Coffea canephora HOM05D006328 ORTHO05D007721 9.4e-78 294.3 268 61.2
Medtr3g083310 Medicago truncatula HOM05D006328 ORTHO05D007721 9.4e-78 294.3 265 60.0
unitig_746.g26630 Utricularia gibba HOM05D006328 ORTHO05D007721 2.1e-77 293.1 261 62.5
DCAR_001992 Daucus carota HOM05D006328 ORTHO05D007721 2.7e-77 292.7 202 72.8
PSO339G5084 Papaver somniferum HOM05D006328 ORTHO05D007721 2.7e-77 292.7 257 61.1
Aqoxy1G00065 Aquilegia oxysepala HOM05D006328 ORTHO05D007721 1.8e-76 290.0 263 60.5
Ah.06g193050 Amaranthus hybridus HOM05D001193 ORTHO05D007721 2.6e-75 286.2 253 60.1
Duzib150G1371 Durio zibethinus HOM05D006328 ORTHO05D007721 3.4e-75 285.8 190 74.7
CDE06G2606 Ceratophyllum demersum HOM05D006328 ORTHO05D007721 9.8e-75 284.3 202 67.8
AUR62000025 Chenopodium quinoa HOM05D006328 ORTHO05D007721 9.8e-75 284.3 174 82.8
PSO384G1580 Papaver somniferum HOM05D006328 ORTHO05D007721 9.8e-75 284.3 257 59.5
Actinidia06854 Actinidia chinensis HOM05D001240 ORTHO05D002450 4.8e-74 282.0 186 76.9
Rhsim13G0229700 Rhododendron simsii HOM05D006328 ORTHO05D007721 8.3e-74 281.2 301 54.8
Os07g0608100 Oryza sativa ssp. japonica HOM05D006328 ORTHO05D007721 8.3e-66 254.6 206 64.1
Hma1.2p1_0062F.1_g034180 Hydrangea macrophylla HOM05D006328 ORTHO05D007721 2.4e-65 253.1 138 88.4
vmacro04215 Vaccinium macrocarpon HOM05D006328 ORTHO05D007721 3.5e-64 249.2 185 70.3
Zm00001eb108920 Zea mays HOM05D006328 ORTHO05D007721 1.1e-62 244.2 196 63.3
VMungo0540G0449 Vigna mungo HOM05D006328 ORTHO05D007721 9.8e-59 231.1 122 89.3
Psat5g101200 Pisum sativum HOM05D006328 ORTHO05D007721 3.0e-55 219.5 211 59.7
AagrBONN_evm.TU.Sc2ySwM_344.1649 Anthoceros agrestis HOM05D006328 ORTHO05D007721 1.2e-48 197.6 190 56.8
Sc06g0004300 Simmondsia chinensis HOM05D006328 ORTHO05D007721 1.2e-48 197.6 184 60.9
vmacro22566 Vaccinium macrocarpon HOM05D006328 ORTHO05D007721 2.5e-46 189.9 125 76.0
Mapoly0048s0070 Marchantia polymorpha HOM05D006328 ORTHO05D007721 1.6e-45 187.2 232 46.1
Pp3c11_23310 Physcomitrium patens HOM05D006328 ORTHO05D007721 6.8e-44 181.8 196 52.6
CBR_g50072 Chara braunii HOM05D006328 ORTHO05D007721 5.6e-38 162.2 141 56.7
CDE07G1106 Ceratophyllum demersum HOM05D006328 ORTHO05D007721 6.8e-36 155.2 193 44.0
CSS0049555 Camellia sinensis var. sinensis HOM05D006328 ORTHO05D007721 9.9e-35 151.4 107 72.0
CSS0028438 Camellia sinensis var. sinensis HOM05D006328 ORTHO05D007721 3.2e-33 146.4 106 70.8
Duzib168G1709 Durio zibethinus HOM05D006328 ORTHO05D007721 9.2e-33 144.8 190 47.9
Nn2g15765 Nelumbo nucifera HOM05D006328 ORTHO05D007721 2.3e-31 140.2 71 91.5
HanXRQChr04g0113321 Helianthus annuus HOM05D006328 ORTHO05D007721 1.1e-25 121.3 61 88.5
Nn2g15764 Nelumbo nucifera HOM05D006328 ORTHO05D007721 9.6e-22 108.2 85 68.2
HanXRQChr17g0560491 Helianthus annuus HOM05D006328 ORTHO05D007721 1.3e-18 97.8 62 74.2
Dinv15017 Davidia involucrata HOM05D006328 ORTHO05D007721 8.4e-18 95.1 137 49.6
VMungo0540G1370 Vigna mungo HOM05D006328 ORTHO05D007721 1.9e-17 94.0 144 45.8
unitig_899.g15354 Utricularia gibba HOM05D006328 ORTHO05D007721 1.6e-16 90.9 50 80.0
Sabra06G0010000 Salix brachista HOM05D006328 ORTHO05D007721 5.1e-15 85.9 96 52.1
Hma1.2p1_0062F.1_g034160 Hydrangea macrophylla HOM05D006328 ORTHO05D007721 1.9e-14 84.0 112 50.9
arahy.Tifrunner.gnm1.ann1.VB18ZC Arachis hypogaea HOM05D006328 ORTHO05D007721 1.6e-13 80.9 66 65.2
arahy.Tifrunner.gnm1.ann1.C5G03I Arachis hypogaea HOM05D006328 ORTHO05D007721 4.0e-12 76.3 66 62.1
Zm00001eb327220 Zea mays HOM05D006328 ORTHO05D007721 4.2e-09 66.2 76 47.4
Dinv08842 Davidia involucrata HOM05D006328 ORTHO05D007721 3.3e-06 56.6 48 66.7


User provided reference genes

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