Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR102G1320 Punica granatum HOM05D004715 ORTHO05D005644 5.4e-110 401.0 198 100.0
QL05p027948 Quercus lobata HOM05D004715 ORTHO05D005644 6.4e-79 297.7 197 72.1
Eucgr.F02544 Eucalyptus grandis HOM05D004715 ORTHO05D005644 1.4e-78 296.6 173 82.1
GSVIVG01017274001 Vitis vinifera HOM05D004715 ORTHO05D005644 3.2e-78 295.4 195 70.8
TWI18G0840 Tripterygium wilfordii HOM05D004715 ORTHO05D005644 2.1e-77 292.7 195 71.8
arahy.Tifrunner.gnm1.ann1.EP2671 Arachis hypogaea HOM05D004715 ORTHO05D005644 2.3e-76 289.3 196 70.4
arahy.Tifrunner.gnm1.ann1.GHMT6A Arachis hypogaea HOM05D004715 ORTHO05D005644 3.9e-76 288.5 196 70.4
TAR369G0040 Trochodendron aralioides HOM05D004715 ORTHO05D005644 4.3e-75 285.0 195 68.7
Cfa001997 Carpinus fangiana HOM05D004715 ORTHO05D005644 9.6e-75 283.9 195 70.3
Aqoxy1G00791 Aquilegia oxysepala HOM05D004715 ORTHO05D005644 2.1e-74 282.7 198 66.2
DCAR_025488 Daucus carota HOM05D004715 ORTHO05D005644 1.1e-73 280.4 198 68.2
PSO384G1744 Papaver somniferum HOM05D004715 ORTHO05D005644 3.1e-73 278.9 195 67.7
Medtr1g052500 Medicago truncatula HOM05D004715 ORTHO05D005644 5.3e-73 278.1 197 69.0
Ca_12943_v3 Cicer arietinum L. HOM05D004715 ORTHO05D005644 6.9e-73 277.7 197 69.0
TWI12G0849 Tripterygium wilfordii HOM05D004715 ORTHO05D005644 9.0e-73 277.3 189 68.3
Lalb_Chr22g0350991 Lupinus albus HOM05D004715 ORTHO05D005644 2.6e-72 275.8 197 66.5
Medtr3g005080 Medicago truncatula HOM05D004715 ORTHO05D005644 2.6e-72 275.8 197 68.5
CiPaw.01G245000 Carya illinoinensis HOM05D004715 ORTHO05D005644 3.4e-72 275.4 195 67.2
Gohir.A05G125400 Gossypium hirsutum HOM05D004715 ORTHO05D005644 4.5e-72 275.0 201 66.7
PSO339G1448 Papaver somniferum HOM05D004715 ORTHO05D005644 4.5e-72 275.0 195 67.2
Phvul.005G004200 Phaseolus vulgaris HOM05D004715 ORTHO05D005644 4.5e-72 275.0 197 66.5
TPR.G25532 Trifolium pratense HOM05D004715 ORTHO05D005644 5.8e-72 274.6 197 68.5
Glyma.04G133700 Glycine max HOM05D004715 ORTHO05D005644 7.6e-72 274.2 197 67.5
HPP92_025406 Vanilla planifolia HOM05D004715 ORTHO05D005644 7.6e-72 274.2 198 63.6
ClCG09G002750 Citrullus lanatus HOM05D004715 ORTHO05D005644 9.9e-72 273.9 198 68.2
CsaV3_7G032580 Cucumis sativus L. HOM05D004715 ORTHO05D005644 9.9e-72 273.9 198 68.2
Gorai.009G130400 Gossypium raimondii HOM05D004715 ORTHO05D005644 1.3e-71 273.5 201 66.2
CANSAT56G4056 Cannabis sativa HOM05D004715 ORTHO05D005644 1.7e-71 273.1 197 66.5
Gohir.D10G075500 Gossypium hirsutum HOM05D004715 ORTHO05D005644 1.7e-71 273.1 198 66.2
Gorai.011G081500 Gossypium raimondii HOM05D004715 ORTHO05D005644 1.7e-71 273.1 198 66.2
Sed0013432 Sechium edule HOM05D004715 ORTHO05D005644 2.9e-71 272.3 197 68.0
Nn7g35903 Nelumbo nucifera HOM05D004715 ORTHO05D005644 3.8e-71 271.9 195 65.6
Sc14g0006620 Simmondsia chinensis HOM05D004715 ORTHO05D005644 3.8e-71 271.9 199 65.8
Thecc.06G070800 Theobroma cacao HOM05D004715 ORTHO05D005644 3.8e-71 271.9 201 65.7
MELO3C023404.2 Cucumis melo HOM05D004715 ORTHO05D005644 8.4e-71 270.8 198 68.2
AUR62000794 Chenopodium quinoa HOM05D004715 ORTHO05D005644 1.1e-70 270.4 199 66.3
Os05g0453900 Oryza sativa ssp. japonica HOM05D004715 ORTHO05D005644 1.1e-70 270.4 198 64.6
Gohir.D05G126400 Gossypium hirsutum HOM05D004715 ORTHO05D005644 1.4e-70 270.0 201 65.2
Phvul.005G019100 Phaseolus vulgaris HOM05D004715 ORTHO05D005644 1.4e-70 270.0 197 66.0
Lj3g0005798 Lotus japonicus HOM05D004715 ORTHO05D005644 5.5e-70 268.1 197 67.0
Prupe.3G081400 Prunus persica HOM05D004715 ORTHO05D005644 1.6e-69 266.5 199 66.8
RcHm_v2.0_Chr2g0123461 Rosa chinensis HOM05D004715 ORTHO05D005644 1.6e-69 266.5 197 66.5
Ciclev10026407m.g Citrus clementina HOM05D004715 ORTHO05D005644 2.7e-69 265.8 199 66.3
FvH4_1g25440 Fragaria vesca HOM05D004715 ORTHO05D005644 2.7e-69 265.8 197 65.0
Lsat_1_v5_gn_5_132400 Lactuca sativa HOM05D004715 ORTHO05D005644 2.7e-69 265.8 195 66.2
Manes.11G053500 Manihot esculenta HOM05D004715 ORTHO05D005644 3.5e-69 265.4 199 64.8
AL2G41320 Arabidopsis lyrata HOM05D004715 ORTHO05D005644 7.9e-69 264.2 199 64.3
EL10Ac4g09393 Beta vulgaris HOM05D004715 ORTHO05D005644 1.3e-68 263.5 199 64.8
RcHm_v2.0_Chr2g0136471 Rosa chinensis HOM05D004715 ORTHO05D005644 1.8e-68 263.1 197 65.5
AT1G80190 Arabidopsis thaliana HOM05D004715 ORTHO05D005644 2.3e-68 262.7 199 63.8
Hund21699 Selenicereus undatus HOM05D004715 ORTHO05D005644 2.3e-68 262.7 198 64.1
SEGI_27675 Sequoiadendron giganteum HOM05D004715 ORTHO05D005644 2.3e-68 262.7 198 59.6
Thhalv10019155m.g Eutrema salsugineum HOM05D004715 ORTHO05D005644 3.0e-68 262.3 199 64.3
THA.LOC104812498 Tarenaya hassleriana HOM05D004715 ORTHO05D005644 3.9e-68 261.9 202 63.4
Cpa.g.sc10.228 Carica papaya HOM05D004715 ORTHO05D005644 5.1e-68 261.5 199 64.8
Dinv30576 Davidia involucrata HOM05D004715 ORTHO05D005644 5.1e-68 261.5 195 65.1
Aa31LG1G19480 Aethionema arabicum HOM05D004715 ORTHO05D005644 6.7e-68 261.2 199 63.8
Hma1.2p1_0317F.1_g123670 Hydrangea macrophylla HOM05D004715 ORTHO05D005644 8.7e-68 260.8 195 65.1
Hma1.2p1_1398F.1_g280822 Hydrangea macrophylla HOM05D004715 ORTHO05D005644 8.7e-68 260.8 195 65.1
Carub.0002s2733 Capsella rubella HOM05D004715 ORTHO05D005644 1.1e-67 260.4 199 63.8
Carub.0005s0104 Capsella rubella HOM05D004715 ORTHO05D005644 1.1e-67 260.4 199 63.8
Duzib160G0636 Durio zibethinus HOM05D004715 ORTHO05D005644 1.1e-67 260.4 192 65.1
Potri.006G142300 Populus trichocarpa HOM05D004715 ORTHO05D005644 1.5e-67 260.0 199 62.3
C02p37490 Brassica napus HOM05D004715 ORTHO05D005644 2.5e-67 259.2 196 61.7
FAN23G0015 Fragaria x ananassa HOM05D004715 ORTHO05D005644 2.5e-67 259.2 197 64.5
Glyma.07G105000 Glycine max HOM05D004715 ORTHO05D005644 2.5e-67 259.2 197 65.5
CARHR074290 Cardamine hirsuta HOM05D004715 ORTHO05D005644 3.3e-67 258.8 199 62.8
Hma1.2p1_1398F.1_g280805 Hydrangea macrophylla HOM05D004715 ORTHO05D005644 3.3e-67 258.8 195 65.1
BcaC03g15994 Brassica carinata HOM05D004715 ORTHO05D005644 4.3e-67 258.5 196 61.7
Duzib235G0750 Durio zibethinus HOM05D004715 ORTHO05D005644 4.3e-67 258.5 201 63.7
AUR62005173 Chenopodium quinoa HOM05D004715 ORTHO05D005644 7.4e-67 257.7 190 65.8
Ciclev10027256m.g Citrus clementina HOM05D004715 ORTHO05D005644 9.6e-67 257.3 193 65.8
FAN26G3166 Fragaria x ananassa HOM05D004715 ORTHO05D005644 2.8e-66 255.8 191 64.9
Actinidia01764 Actinidia chinensis HOM05D004715 ORTHO05D005644 3.7e-66 255.4 195 63.1
FAN19G1260 Fragaria x ananassa HOM05D000191 ORTHO05D005644 3.7e-66 255.4 191 63.9
FAN28G2078 Fragaria x ananassa HOM05D004715 ORTHO05D005644 4.8e-66 255.0 191 64.9
A02p23740 Brassica napus HOM05D004715 ORTHO05D005644 1.4e-65 253.4 196 60.7
BraA02t07366Z Brassica rapa HOM05D004715 ORTHO05D005644 1.4e-65 253.4 196 60.7
BcaB05g25289 Brassica carinata HOM05D004715 ORTHO05D005644 1.2e-64 250.4 199 60.8
HanXRQChr15g0463891 Helianthus annuus HOM05D004715 ORTHO05D005644 1.5e-64 250.0 199 63.8
Oeu052278.1 Olea europaea HOM05D004715 ORTHO05D005644 2.0e-64 249.6 222 58.1
CDE02G3949 Ceratophyllum demersum HOM05D004715 ORTHO05D005644 2.6e-64 249.2 198 59.6
Aa31LG4G470 Aethionema arabicum HOM05D004715 ORTHO05D005644 4.5e-64 248.4 193 62.7
CSS0021095 Camellia sinensis var. sinensis HOM05D004715 ORTHO05D005644 4.5e-64 248.4 195 64.6
Migut.I00797 Erythranthe guttata HOM05D004715 ORTHO05D005644 5.8e-64 248.1 225 57.3
Rhsim08G0215800 Rhododendron simsii HOM05D004715 ORTHO05D005644 5.8e-64 248.1 227 56.8
SGA_v2.0_scaffold5G02664 Striga asiatica HOM05D004715 ORTHO05D005644 1.0e-63 247.3 222 57.2
Sp5g35610 Schrenkiella parvula HOM05D004715 ORTHO05D005644 1.3e-63 246.9 193 61.7
Lj5A69G39 Lonicera japonica HOM05D004715 ORTHO05D005644 2.2e-63 246.1 228 57.0
Atru.chr1.3057 Acer truncatum HOM05D004715 ORTHO05D005644 4.9e-63 245.0 183 65.6
BolC2t09760H Brassica oleracea HOM05D004715 ORTHO05D005644 8.4e-63 244.2 193 60.1
BcaB02g07291 Brassica carinata HOM05D004715 ORTHO05D005644 1.1e-62 243.8 199 58.8
MSTRG.11119 Avicennia marina HOM05D004715 ORTHO05D005644 1.2e-61 240.4 224 56.2
vmacro18968 Vaccinium macrocarpon HOM05D004715 ORTHO05D005644 6.0e-61 238.0 245 52.7
ATR0210G050 Amborella trichopoda HOM05D004715 ORTHO05D005644 1.3e-60 236.9 173 64.2
MD17G1206800 Malus domestica HOM05D004715 ORTHO05D005644 2.3e-60 236.1 196 61.2
CAN.G1830.13 Capsicum annuum HOM05D004715 ORTHO05D005644 3.9e-60 235.3 231 52.8
Ah.06g189580 Amaranthus hybridus HOM05D004715 ORTHO05D005644 1.1e-59 233.8 190 59.5
Cc04_g04100 Coffea canephora HOM05D004715 ORTHO05D005644 3.3e-59 232.3 210 57.1
Solyc09g008630.3 Solanum lycopersicum HOM05D004715 ORTHO05D005644 3.3e-59 232.3 231 52.8
Sopen09g003430 Solanum pennellii HOM05D004715 ORTHO05D005644 5.7e-59 231.5 231 52.4
SGA_v2.0_scaffold5G02667 Striga asiatica HOM05D005082 ORTHO05D006474 7.4e-59 231.1 229 53.3
PGSC0003DMG403012981 Solanum tuberosum HOM05D004715 ORTHO05D005644 1.3e-58 230.3 231 52.8
C06p28980 Brassica napus HOM05D004715 ORTHO05D005644 4.8e-58 228.4 194 56.7
Sabra06G0111400 Salix brachista HOM05D004715 ORTHO05D005644 1.1e-57 227.3 264 48.1
Nitab4.5_0004281g0110 Nicotiana tabacum HOM05D004715 ORTHO05D005644 1.4e-57 226.9 222 52.7
BcaC08g45296 Brassica carinata HOM05D004715 ORTHO05D005644 5.3e-57 224.9 193 56.0
Haze_16520 Corylus avellana HOM05D004715 ORTHO05D005644 1.5e-56 223.4 195 58.5
SMO347G0348 Selaginella moellendorffii HOM05D004715 ORTHO05D005644 3.4e-56 222.2 189 53.4
AagrBONN_evm.TU.Sc2ySwM_368.872 Anthoceros agrestis HOM05D004715 ORTHO05D005644 7.6e-56 221.1 198 51.5
BolC6t38064H Brassica oleracea HOM05D004715 ORTHO05D005644 1.3e-55 220.3 194 55.7
Oeu063807.1 Olea europaea HOM05D004715 ORTHO05D005644 7.9e-53 211.1 148 68.9
unitig_0.g2002 Utricularia gibba HOM05D004715 ORTHO05D005644 1.1e-51 207.2 253 45.5
Pp3c20_16980 Physcomitrium patens HOM05D004715 ORTHO05D005644 3.3e-51 205.7 195 52.3
Pp3c20_17250 Physcomitrium patens HOM05D004715 ORTHO05D005644 3.3e-51 205.7 195 52.3
Atru.BG.159.p Acer truncatum HOM05D004715 ORTHO05D005644 7.4e-51 204.5 146 69.2
TPR.G1414 Trifolium pratense HOM05D004715 ORTHO05D005644 4.8e-50 201.8 148 64.2
Nitab4.5_0006709g0030 Nicotiana tabacum HOM05D004715 ORTHO05D005644 6.3e-50 201.4 205 52.7
VMungo1080G0231 Vigna mungo HOM05D006110 ORTHO05D007774 1.4e-49 200.3 143 67.1
SalBow2G3045 Salvia bowleyana HOM05D004715 ORTHO05D005644 6.9e-49 198.0 191 52.4
Zm00001eb065860 Zea mays HOM05D004715 ORTHO05D005644 3.4e-48 195.7 198 51.5
Peaxi162Scf00125g00003 Petunia axillaris HOM05D004715 ORTHO05D005644 1.1e-46 190.7 157 60.5
Psat5g222760 Pisum sativum HOM05D004715 ORTHO05D005644 1.4e-46 190.3 144 63.9
Rhsim03G0103800 Rhododendron simsii HOM05D004715 ORTHO05D005644 1.2e-45 187.2 195 51.8
TPR.G18869 Trifolium pratense HOM05D004715 ORTHO05D005644 1.6e-45 186.8 177 55.4
CBR_g20274 Chara braunii HOM05D006908 ORTHO05D008662 2.1e-45 186.4 195 46.7
Mapoly0008s0246 Marchantia polymorpha HOM05D004715 ORTHO05D005644 2.5e-43 179.5 199 45.2
Peaxi162Scf01195g00016 Petunia axillaris HOM05D004715 ORTHO05D005644 7.4e-43 177.9 190 50.0
MBI14_g02860_MAGBIO Magnolia biondii HOM05D004715 ORTHO05D005644 5.3e-41 171.8 116 69.0
TPR.G1424 Trifolium pratense HOM05D004715 ORTHO05D005644 5.3e-41 171.8 191 51.8
Rhsim03G0101400 Rhododendron simsii HOM05D004715 ORTHO05D005644 9.1e-41 171.0 189 49.2
A07p26560 Brassica napus HOM05D004715 ORTHO05D005644 1.2e-40 170.6 154 54.5
FAN14G0801 Fragaria x ananassa HOM05D004715 ORTHO05D005644 5.9e-40 168.3 197 47.2
ECA234G4462 Erigeron canadensis HOM05D004715 ORTHO05D005644 4.2e-38 162.2 149 51.7
VMungo0331G0566 Vigna mungo HOM05D004715 ORTHO05D005644 9.4e-38 161.0 171 50.9
TAR369G0577 Trochodendron aralioides HOM05D004715 ORTHO05D005644 2.1e-37 159.8 195 45.6
CDE09G0533 Ceratophyllum demersum HOM05D004715 ORTHO05D005644 3.0e-36 156.0 119 58.8
MCO12G383 Micromonas commoda HOM05D004715 ORTHO05D005644 1.1e-33 147.5 195 34.9
Gohir.A10G076000 Gossypium hirsutum HOM05D004715 ORTHO05D005644 1.4e-33 147.1 116 62.1
Ca_26811_v3 Cicer arietinum L. HOM05D004715 ORTHO05D005644 7.0e-33 144.8 114 62.3
CDE09G0914 Ceratophyllum demersum HOM05D004715 ORTHO05D005644 2.6e-32 142.9 122 54.1
COL.COLO4_12914 Corchorus olitorius HOM05D004715 ORTHO05D005644 3.5e-32 142.5 110 61.8
Cc00_g27240 Coffea canephora HOM05D004715 ORTHO05D005644 1.1e-30 137.5 152 49.3
BraA07t30299Z Brassica rapa HOM05D004715 ORTHO05D005644 2.1e-29 133.3 111 55.9
Gohir.A10G075900 Gossypium hirsutum HOM05D004715 ORTHO05D005644 1.5e-27 127.1 86 67.4
TPR.G13435 Trifolium pratense HOM05D004715 ORTHO05D005644 4.8e-26 122.1 113 53.1
TPR.G30851 Trifolium pratense HOM05D004715 ORTHO05D005644 1.1e-22 110.9 79 70.9
FvH4_6g30230 Fragaria vesca HOM05D004715 ORTHO05D005644 1.9e-22 110.2 197 40.6
PRCOL_00005608 Prasinoderma coloniale HOM05D004715 ORTHO05D005644 2.1e-21 106.7 202 30.2
Medtr7g052330 Medicago truncatula HOM05D004715 ORTHO05D005644 1.8e-20 103.6 187 38.0
Cre03.g161050 Chlamydomonas reinhardtii HOM05D004715 ORTHO05D005644 3.4e-19 99.4 204 30.9
TAR623G1252 Trochodendron aralioides HOM05D004715 ORTHO05D005644 1.8e-17 93.6 56 78.6
Hma1.2p1_1398F.1_g280810 Hydrangea macrophylla HOM05D004715 ORTHO05D005644 2.4e-17 93.2 54 83.3
MSTRG.22727 Avicennia marina HOM05D004715 ORTHO05D005644 2.1e-13 80.1 67 56.7
Cfa026515 Carpinus fangiana HOM05D040851 ORTHO05D024893 8.6e-07 58.2 112 31.2
HanXRQChr09g0268691 Helianthus annuus HOM05D004715 ORTHO05D005644 1.1e-06 57.8 49 55.1
Hma1.2p1_1398F.1_g280823 Hydrangea macrophylla HOM05D004715 ORTHO05D005644 3.3e-06 56.2 49 51.0


User provided reference genes

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