Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR102G1298 Punica granatum HOM05D003884 ORTHO05D004482 2.2e-88 328.9 165 100.0
CSS0028392 Camellia sinensis var. sinensis HOM05D003884 ORTHO05D004482 4.9e-32 141.7 135 53.3
Prupe.1G258900 Prunus persica HOM05D003884 ORTHO05D004482 1.4e-31 140.2 146 50.7
Nitab4.5_0004536g0010 Nicotiana tabacum HOM05D003884 ORTHO05D004482 4.2e-31 138.7 168 49.4
Dinv24898 Davidia involucrata HOM05D003884 ORTHO05D004482 1.6e-30 136.7 172 48.3
GSVIVG01020166001 Vitis vinifera HOM05D003884 ORTHO05D004482 3.5e-30 135.6 111 61.3
COL.COLO4_37908 Corchorus olitorius HOM05D003884 ORTHO05D004482 7.8e-30 134.4 140 51.4
Haze_12163 Corylus avellana HOM05D003884 ORTHO05D004482 7.8e-30 134.4 131 52.7
Hma1.2p1_1017F.1_g248220 Hydrangea macrophylla HOM05D003884 ORTHO05D004482 1.3e-29 133.7 120 56.7
Manes.01G197000 Manihot esculenta HOM05D003884 ORTHO05D004482 1.3e-29 133.7 140 50.7
MSTRG.2381 Avicennia marina HOM05D003884 ORTHO05D004482 1.7e-29 133.3 112 58.0
Nitab4.5_0004033g0080 Nicotiana tabacum HOM05D003884 ORTHO05D004482 1.7e-29 133.3 117 58.1
Thecc.02G243200 Theobroma cacao HOM05D003884 ORTHO05D004482 2.3e-29 132.9 161 49.1
Lsat_1_v5_gn_3_49081 Lactuca sativa HOM05D003884 ORTHO05D004482 3.0e-29 132.5 115 57.4
TAR622G0672 Trochodendron aralioides HOM05D003884 ORTHO05D004482 3.9e-29 132.1 165 49.1
Cpa.g.sc5.356 Carica papaya HOM05D003884 ORTHO05D004482 6.6e-29 131.3 170 46.5
Duzib248G1263 Durio zibethinus HOM05D003884 ORTHO05D004482 6.6e-29 131.3 115 55.7
FAN22G1839 Fragaria x ananassa HOM05D003884 ORTHO05D004482 8.7e-29 131.0 165 45.5
Glyma.08G290900 Glycine max HOM05D003884 ORTHO05D004482 8.7e-29 131.0 107 60.7
AUR62026600 Chenopodium quinoa HOM05D003884 ORTHO05D004482 1.1e-28 130.6 169 46.2
Psat4g125600 Pisum sativum HOM05D003884 ORTHO05D004482 1.1e-28 130.6 134 52.2
FvH4_4g34960 Fragaria vesca HOM05D003884 ORTHO05D004482 1.5e-28 130.2 147 45.6
FAN12G0178 Fragaria x ananassa HOM05D003884 ORTHO05D004482 1.5e-28 130.2 147 45.6
Sed0027154 Sechium edule HOM05D003884 ORTHO05D004482 3.3e-28 129.0 137 48.9
PGSC0003DMG400015596 Solanum tuberosum HOM05D003884 ORTHO05D004482 3.3e-28 129.0 113 56.6
SGA_v2.0_scaffold87G27003 Striga asiatica HOM05D003884 ORTHO05D004482 5.6e-28 128.3 173 44.5
TWI75G1604 Tripterygium wilfordii HOM05D003884 ORTHO05D004482 5.6e-28 128.3 142 50.0
CiPaw.05G149600 Carya illinoinensis HOM05D003884 ORTHO05D004482 7.3e-28 127.9 112 54.5
Gorai.009G344500 Gossypium raimondii HOM05D003884 ORTHO05D004482 7.3e-28 127.9 112 55.4
FAN07G1775 Fragaria x ananassa HOM05D003884 ORTHO05D004482 1.3e-27 127.1 165 44.8
FAN17G0777 Fragaria x ananassa HOM05D003884 ORTHO05D004482 1.6e-27 126.7 165 44.2
VMungo0251G0159 Vigna mungo HOM05D003884 ORTHO05D004482 2.8e-27 125.9 152 44.1
Medtr8g063190 Medicago truncatula HOM05D003884 ORTHO05D004482 6.2e-27 124.8 122 54.1
HPP92_017073 Vanilla planifolia HOM05D003884 ORTHO05D004482 6.2e-27 124.8 107 54.2
Sopen05g002070 Solanum pennellii HOM05D003884 ORTHO05D004482 1.8e-26 123.2 134 49.3
Gohir.D05G321100 Gossypium hirsutum HOM05D003884 ORTHO05D004482 3.1e-26 122.5 112 55.4
Hund25320 Selenicereus undatus HOM05D003884 ORTHO05D004482 3.1e-26 122.5 147 46.3
Gohir.A05G318900 Gossypium hirsutum HOM05D003884 ORTHO05D004482 1.2e-25 120.6 136 49.3
Lj4g0012912 Lotus japonicus HOM05D003884 ORTHO05D004482 1.5e-25 120.2 149 46.3
Oeu001665.1 Olea europaea HOM05D003884 ORTHO05D004482 1.5e-25 120.2 151 45.0
Rhsim12G0124000 Rhododendron simsii HOM05D003884 ORTHO05D004482 1.5e-25 120.2 169 40.2
Aqoxy3G00923 Aquilegia oxysepala HOM05D003884 ORTHO05D004482 2.6e-25 119.4 113 54.0
PSO161G0071 Papaver somniferum HOM05D003884 ORTHO05D004482 2.6e-25 119.4 106 54.7
arahy.Tifrunner.gnm1.ann1.QD9WVF Arachis hypogaea HOM05D003884 ORTHO05D004482 3.4e-25 119.0 132 48.5
MELO3C012022.2 Cucumis melo HOM05D003884 ORTHO05D004482 4.5e-25 118.6 176 40.3
PSO478G1563 Papaver somniferum HOM05D003884 ORTHO05D004482 4.5e-25 118.6 106 53.8
Phvul.003G054800 Phaseolus vulgaris HOM05D003884 ORTHO05D004482 4.5e-25 118.6 134 49.3
arahy.Tifrunner.gnm1.ann1.9N1GR3 Arachis hypogaea HOM05D003884 ORTHO05D004482 5.8e-25 118.2 141 46.1
CsaV3_5G031830 Cucumis sativus L. HOM05D003884 ORTHO05D004482 7.6e-25 117.9 126 48.4
Migut.E00143 Erythranthe guttata HOM05D003884 ORTHO05D004482 1.3e-24 117.1 178 38.2
CDE05G1492 Ceratophyllum demersum HOM05D003884 ORTHO05D004482 2.9e-24 115.9 113 48.7
ECA246G1403 Erigeron canadensis HOM05D003884 ORTHO05D004482 3.8e-24 115.5 112 52.7
ATR1149G127 Amborella trichopoda HOM05D003884 ORTHO05D004482 4.9e-24 115.2 157 46.5
ClCG05G025070 Citrullus lanatus HOM05D003884 ORTHO05D004482 1.2e-22 110.5 190 37.9
Peaxi162Scf00421g00615 Petunia axillaris HOM05D003884 ORTHO05D004482 1.2e-22 110.5 146 43.2
CSS0013891 Camellia sinensis var. sinensis HOM05D003884 ORTHO05D004482 1.5e-20 103.6 145 41.4
Nn4g22884 Nelumbo nucifera HOM05D003884 ORTHO05D004482 3.3e-20 102.4 135 43.0
unitig_62.g23678 Utricularia gibba HOM05D003884 ORTHO05D004482 5.6e-20 101.7 122 44.3
AUR62039407 Chenopodium quinoa HOM05D003884 ORTHO05D004482 7.4e-20 101.3 172 37.2
QL03p062328 Quercus lobata HOM05D003884 ORTHO05D004482 7.4e-20 101.3 265 31.7
Hma1.2p1_0160F.1_g070580 Hydrangea macrophylla HOM05D003884 ORTHO05D004482 9.6e-20 100.9 114 42.1
Nitab4.5_0005722g0050 Nicotiana tabacum HOM05D003884 ORTHO05D004482 9.6e-20 100.9 139 38.1
Nitab4.5_0000257g0220 Nicotiana tabacum HOM05D003884 ORTHO05D004482 1.3e-19 100.5 139 38.1
MBI15_g16616_MAGBIO Magnolia biondii HOM05D003884 ORTHO05D004482 1.6e-19 100.1 95 50.5
SGA_v2.0_scaffold8G04247 Striga asiatica HOM05D003884 ORTHO05D004482 1.6e-19 100.1 141 39.7
Atru.chr11.1968 Acer truncatum HOM05D003884 ORTHO05D004482 3.6e-19 99.0 146 41.8
Ah.03g132360 Amaranthus hybridus HOM05D003884 ORTHO05D004482 3.6e-19 99.0 120 43.3
CAN.G1160.2 Capsicum annuum HOM05D003884 ORTHO05D004482 4.8e-19 98.6 140 38.6
Migut.L01446 Erythranthe guttata HOM05D003884 ORTHO05D004482 4.8e-19 98.6 111 45.0
DCAR_026554 Daucus carota HOM05D003884 ORTHO05D004482 8.1e-19 97.8 108 45.4
RcHm_v2.0_Chr4g0444531 Rosa chinensis HOM05D003884 ORTHO05D004482 8.1e-19 97.8 141 41.1
CiPaw.05G146300 Carya illinoinensis HOM05D003884 ORTHO05D004482 1.1e-18 97.4 132 40.2
CsaV3_5G031870 Cucumis sativus L. HOM05D003884 ORTHO05D004482 1.4e-18 97.1 140 40.7
Lsat_1_v5_gn_3_49121 Lactuca sativa HOM05D003884 ORTHO05D004482 1.4e-18 97.1 136 39.7
MBI15_g45678_MAGBIO Magnolia biondii HOM05D003884 ORTHO05D004482 1.4e-18 97.1 103 46.6
Peaxi162Scf00421g00711 Petunia axillaris HOM05D003884 ORTHO05D004482 1.4e-18 97.1 125 37.6
PGSC0003DMG400015599 Solanum tuberosum HOM05D003884 ORTHO05D004482 1.4e-18 97.1 141 38.3
Dinv30997 Davidia involucrata HOM05D003884 ORTHO05D004482 1.8e-18 96.7 109 45.0
Dinv31106 Davidia involucrata HOM05D003884 ORTHO05D004482 1.8e-18 96.7 109 45.0
Solyc05g006110.3 Solanum lycopersicum HOM05D003884 ORTHO05D004482 2.4e-18 96.3 151 36.4
CDE10G0847 Ceratophyllum demersum HOM05D003884 ORTHO05D004482 3.1e-18 95.9 115 43.5
PSO832G2848 Papaver somniferum HOM05D003884 ORTHO05D004482 3.1e-18 95.9 111 44.1
THA.LOC104819574 Tarenaya hassleriana HOM05D003884 ORTHO05D004482 4.0e-18 95.5 146 37.0
TAR629G2251 Trochodendron aralioides HOM05D003884 ORTHO05D004482 4.0e-18 95.5 145 35.9
Cc00_g22770 Coffea canephora HOM05D003884 ORTHO05D004482 5.3e-18 95.1 114 43.9
MSTRG.622 Avicennia marina HOM05D003884 ORTHO05D004482 6.9e-18 94.7 107 45.8
MELO3C012025.2 Cucumis melo HOM05D003884 ORTHO05D004482 6.9e-18 94.7 142 39.4
Oeu001657.1 Olea europaea HOM05D003884 ORTHO05D004482 6.9e-18 94.7 167 35.3
Duzib248G1092 Durio zibethinus HOM05D003884 ORTHO05D004482 9.0e-18 94.4 145 38.6
Glyma.18G132900 Glycine max HOM05D003884 ORTHO05D004482 9.0e-18 94.4 134 39.6
VMungo0251G2950 Vigna mungo HOM05D003884 ORTHO05D004482 9.0e-18 94.4 136 41.2
Aa31LG1G4430 Aethionema arabicum HOM05D003884 ORTHO05D004482 1.2e-17 94.0 173 38.2
Cfa009102 Carpinus fangiana HOM05D005206 ORTHO05D006219 1.2e-17 94.0 132 39.4
CDE10G0415 Ceratophyllum demersum HOM05D003884 ORTHO05D004482 1.2e-17 94.0 115 41.7
Atru.chr11.1961 Acer truncatum HOM05D003884 ORTHO05D004482 1.5e-17 93.6 107 45.8
EL10Ac4g10087 Beta vulgaris HOM05D003884 ORTHO05D004482 1.5e-17 93.6 141 39.7
MD13G1086700 Malus domestica HOM05D003884 ORTHO05D004482 1.5e-17 93.6 122 43.4
Sc14g0008540 Simmondsia chinensis HOM05D003884 ORTHO05D004482 1.5e-17 93.6 114 43.0
Phvul.003G055100 Phaseolus vulgaris HOM05D003884 ORTHO05D004482 2.0e-17 93.2 115 41.7
Prupe.1G259800 Prunus persica HOM05D003884 ORTHO05D004482 2.0e-17 93.2 136 39.7
Sopen05g002130 Solanum pennellii HOM05D003884 ORTHO05D004482 2.6e-17 92.8 151 35.1
Thecc.02G242500 Theobroma cacao HOM05D003884 ORTHO05D004482 2.6e-17 92.8 135 37.0
AL1G21330 Arabidopsis lyrata HOM05D003884 ORTHO05D004482 3.4e-17 92.4 151 37.1
CANSAT11G1742 Cannabis sativa HOM05D003884 ORTHO05D004482 3.4e-17 92.4 140 38.6
QL03p062368 Quercus lobata HOM05D003884 ORTHO05D004482 3.4e-17 92.4 288 29.2
Rhsim12G0124300 Rhododendron simsii HOM05D003884 ORTHO05D004482 3.4e-17 92.4 112 42.9
Sed0006672 Sechium edule HOM05D003884 ORTHO05D004482 3.4e-17 92.4 141 36.9
Actinidia08183 Actinidia chinensis HOM05D003884 ORTHO05D004482 5.8e-17 91.7 105 44.8
Ciclev10032870m.g Citrus clementina HOM05D003884 ORTHO05D004482 5.8e-17 91.7 107 44.9
MD16G1086800 Malus domestica HOM05D003884 ORTHO05D004482 5.8e-17 91.7 161 38.5
PGR119G0467 Punica granatum HOM05D003884 ORTHO05D004482 5.8e-17 91.7 130 40.0
Carub.0001s0996 Capsella rubella HOM05D003884 ORTHO05D004482 7.6e-17 91.3 152 37.5
Gohir.A03G142500 Gossypium hirsutum HOM05D003884 ORTHO05D004482 7.6e-17 91.3 115 40.0
Lj4g0002760 Lotus japonicus HOM05D003884 ORTHO05D004482 7.6e-17 91.3 134 40.3
Medtr8g063150 Medicago truncatula HOM05D003884 ORTHO05D004482 7.6e-17 91.3 138 37.7
PSO063G2462 Papaver somniferum HOM05D003884 ORTHO05D004482 7.6e-17 91.3 107 43.9
Zm00001eb098980 Zea mays HOM05D003884 ORTHO05D004482 7.6e-17 91.3 110 40.9
AT1G10522 Arabidopsis thaliana HOM05D003884 ORTHO05D004482 9.9e-17 90.9 169 33.1
FvH4_4g35001 Fragaria vesca HOM05D003884 ORTHO05D004482 9.9e-17 90.9 139 41.7
ATR1149G058 Amborella trichopoda HOM05D003884 ORTHO05D004482 1.3e-16 90.5 111 41.4
Cpa.g.sc5.349 Carica papaya HOM05D003884 ORTHO05D004482 1.3e-16 90.5 107 43.0
FAN07G1004 Fragaria x ananassa HOM05D003884 ORTHO05D004482 1.3e-16 90.5 136 39.0
Sp1g09160 Schrenkiella parvula HOM05D003884 ORTHO05D004482 1.3e-16 90.5 107 43.0
EL10Ac6g13616 Beta vulgaris HOM05D000625 ORTHO05D000467 1.7e-16 90.1 114 43.0
Potri.010G094900 Populus trichocarpa HOM05D003884 ORTHO05D004482 1.7e-16 90.1 132 40.2
QL03p062483 Quercus lobata HOM05D003884 ORTHO05D004482 1.7e-16 90.1 107 42.1
Actinidia27769 Actinidia chinensis HOM05D003884 ORTHO05D004482 2.2e-16 89.7 106 44.3
arahy.Tifrunner.gnm1.ann1.W247EX Arachis hypogaea HOM05D003884 ORTHO05D004482 2.2e-16 89.7 108 41.7
ECA238G2328 Erigeron canadensis HOM05D003884 ORTHO05D004482 2.2e-16 89.7 103 43.7
Lalb_Chr05g0228011 Lupinus albus HOM05D003884 ORTHO05D004482 2.2e-16 89.7 137 38.0
arahy.Tifrunner.gnm1.ann1.FXM0G0 Arachis hypogaea HOM05D000677 ORTHO05D000727 2.9e-16 89.4 115 40.0
A06p07300 Brassica napus HOM05D003884 ORTHO05D004482 3.8e-16 89.0 112 40.2
BraA06t23935Z Brassica rapa HOM05D003884 ORTHO05D004482 3.8e-16 89.0 112 40.2
Manes.05G090800 Manihot esculenta HOM05D003884 ORTHO05D004482 3.8e-16 89.0 183 34.4
Os09g0382400 Oryza sativa ssp. japonica HOM05D003884 ORTHO05D004482 3.8e-16 89.0 110 40.0
BcaC05g24871 Brassica carinata HOM05D003884 ORTHO05D004482 4.9e-16 88.6 107 41.1
C05p08810 Brassica napus HOM05D003884 ORTHO05D004482 4.9e-16 88.6 107 41.1
BolC5t29627H Brassica oleracea HOM05D003884 ORTHO05D004482 4.9e-16 88.6 107 41.1
Haze_12138 Corylus avellana HOM05D003884 ORTHO05D004482 4.9e-16 88.6 132 38.6
BcaC05g24933 Brassica carinata HOM05D003884 ORTHO05D004482 6.4e-16 88.2 107 41.1
CARHR010670 Cardamine hirsuta HOM05D003884 ORTHO05D004482 6.4e-16 88.2 107 42.1
Thhalv10008855m.g Eutrema salsugineum HOM05D003884 ORTHO05D004482 6.4e-16 88.2 180 32.2
Gorai.005G185900 Gossypium raimondii HOM05D003884 ORTHO05D004482 6.4e-16 88.2 107 41.1
FAN12G1036 Fragaria x ananassa HOM05D003884 ORTHO05D004482 8.4e-16 87.8 139 41.0
Sabra10G0067200 Salix brachista HOM05D003884 ORTHO05D004482 8.4e-16 87.8 167 35.3
Gohir.D02G165800 Gossypium hirsutum HOM05D003884 ORTHO05D004482 1.1e-15 87.4 107 41.1
TWI36G1174 Tripterygium wilfordii HOM05D003884 ORTHO05D004482 1.1e-15 87.4 142 35.2
ClCG05G025040 Citrullus lanatus HOM05D003884 ORTHO05D004482 1.4e-15 87.0 108 41.7
COL.COLO4_38097 Corchorus olitorius HOM05D003884 ORTHO05D004482 1.4e-15 87.0 180 35.0
FAN22G1639 Fragaria x ananassa HOM05D005206 ORTHO05D006219 1.4e-15 87.0 133 39.8
GSVIVG01020172001 Vitis vinifera HOM05D003884 ORTHO05D004482 2.4e-15 86.3 107 42.1
Eucgr.B02560 Eucalyptus grandis HOM05D003884 ORTHO05D004482 3.2e-15 85.9 185 33.5
HPP92_010213 Vanilla planifolia HOM05D003884 ORTHO05D004482 4.2e-15 85.5 129 38.8
Aqoxy3G03081 Aquilegia oxysepala HOM05D003884 ORTHO05D004482 9.3e-15 84.3 119 40.3
Lj3A1049T56 Lonicera japonica HOM05D003884 ORTHO05D004482 9.3e-15 84.3 118 39.0
Ca_22779_v3 Cicer arietinum L. HOM05D003884 ORTHO05D004482 2.7e-14 82.8 157 32.5
Psat4g126120 Pisum sativum HOM05D003884 ORTHO05D004482 2.7e-14 82.8 135 35.6
vmacro16279 Vaccinium macrocarpon HOM05D003884 ORTHO05D004482 3.9e-13 79.0 156 35.9
SalBow2G1244 Salvia bowleyana HOM05D003884 ORTHO05D004482 1.9e-12 76.6 181 32.6
RcHm_v2.0_Chr4g0444421 Rosa chinensis HOM05D003884 ORTHO05D004482 3.3e-12 75.9 105 45.7
SalBow2G3534 Salvia bowleyana HOM05D005206 ORTHO05D006219 3.3e-12 75.9 163 33.7
MD13G1087300 Malus domestica HOM05D003884 ORTHO05D004482 7.4e-12 74.7 96 44.8
Nn3g16971 Nelumbo nucifera HOM05D003884 ORTHO05D004482 2.8e-11 72.8 96 45.8
AUR62026580 Chenopodium quinoa HOM05D005206 ORTHO05D006219 3.7e-11 72.4 124 37.1
Oeu001664.1 Olea europaea HOM05D003884 ORTHO05D004482 6.2e-11 71.6 62 59.7
TPR.G40428 Trifolium pratense HOM05D003884 ORTHO05D004482 6.2e-11 71.6 43 72.1
Lalb_Chr05g0217181 Lupinus albus HOM05D003884 ORTHO05D004482 1.1e-10 70.9 52 59.6
HanXRQChr15g0476661 Helianthus annuus HOM05D003884 ORTHO05D004482 1.4e-10 70.5 104 42.3
CSS0019058 Camellia sinensis var. sinensis HOM05D003884 ORTHO05D004482 5.3e-10 68.6 101 38.6
AUR62005315 Chenopodium quinoa HOM05D003884 ORTHO05D004482 2.6e-09 66.2 108 41.7
Cc11_g14300 Coffea canephora HOM05D003884 ORTHO05D004482 3.4e-09 65.9 56 58.9
TPR.G36109 Trifolium pratense HOM05D003884 ORTHO05D004482 4.5e-09 65.5 57 49.1
CSS0008150 Camellia sinensis var. sinensis HOM05D003884 ORTHO05D004482 7.6e-09 64.7 60 53.3
CAN.G1248.1 Capsicum annuum HOM05D003884 ORTHO05D004482 1.0e-08 64.3 54 53.7
MBI15_g14835_MAGBIO Magnolia biondii HOM05D003884 ORTHO05D004482 4.6e-06 55.5 44 52.3
MD16G1087000 Malus domestica HOM05D003884 ORTHO05D004482 7.9e-06 54.7 41 56.1


User provided reference genes

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