Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR102G0832 Punica granatum HOM05D002268 ORTHO05D006937 1.3e-290 1002.3 489 100.0
CsaV3_4G024220 Cucumis sativus L. HOM05D002268 ORTHO05D006937 3.2e-212 741.9 480 75.6
GSVIVG01025274001 Vitis vinifera HOM05D002268 ORTHO05D006937 3.2e-212 741.9 474 76.6
Atru.chr3.2733 Acer truncatum HOM05D002268 ORTHO05D006937 3.5e-211 738.4 465 77.6
Cpa.g.sc84.62 Carica papaya HOM05D002268 ORTHO05D006937 1.0e-210 736.9 418 82.1
MELO3C014598.2 Cucumis melo HOM05D002268 ORTHO05D006937 1.0e-210 736.9 468 76.5
COL.COLO4_24897 Corchorus olitorius HOM05D002268 ORTHO05D006937 1.3e-210 736.5 474 75.7
Haze_23130 Corylus avellana HOM05D002268 ORTHO05D006937 3.0e-210 735.3 481 74.8
Sed0017829 Sechium edule HOM05D002268 ORTHO05D006937 3.9e-210 734.9 465 76.6
CiPaw.14G119300 Carya illinoinensis HOM05D002268 ORTHO05D006937 1.3e-208 729.9 480 74.4
TWI60G0297 Tripterygium wilfordii HOM05D002268 ORTHO05D006937 1.6e-208 729.6 468 75.9
Prupe.5G028600 Prunus persica HOM05D002268 ORTHO05D006937 2.1e-208 729.2 479 75.4
arahy.Tifrunner.gnm1.ann1.8VL3CN Arachis hypogaea HOM05D002268 ORTHO05D006937 8.1e-208 727.2 475 74.7
Nitab4.5_0006994g0060 Nicotiana tabacum HOM05D002268 ORTHO05D006937 8.1e-208 727.2 472 74.6
Sc16g0011510 Simmondsia chinensis HOM05D002268 ORTHO05D006937 8.1e-208 727.2 475 74.1
Gorai.009G073000 Gossypium raimondii HOM05D002268 ORTHO05D006937 1.4e-207 726.5 486 73.0
QL01p004788 Quercus lobata HOM05D002268 ORTHO05D006937 4.0e-207 724.9 475 73.9
Ca_11284_v3 Cicer arietinum L. HOM05D002268 ORTHO05D006937 5.3e-207 724.5 443 77.4
Ca_30227_v3 Cicer arietinum L. HOM05D002268 ORTHO05D006937 5.3e-207 724.5 443 77.4
Duzib168G2040 Durio zibethinus HOM05D002268 ORTHO05D006937 1.5e-206 723.0 473 74.8
Nitab4.5_0005819g0070 Nicotiana tabacum HOM05D002268 ORTHO05D006937 2.0e-206 722.6 473 74.8
MD11G1196700 Malus domestica HOM05D002268 ORTHO05D006937 2.6e-206 722.2 457 75.5
ClCG02G023280 Citrullus lanatus HOM05D002268 ORTHO05D006937 4.4e-206 721.5 497 72.0
arahy.Tifrunner.gnm1.ann1.VSBS4R Arachis hypogaea HOM05D002268 ORTHO05D006937 5.8e-206 721.1 475 74.1
MD03G1176400 Malus domestica HOM05D002268 ORTHO05D006937 2.9e-205 718.8 469 74.8
arahy.Tifrunner.gnm1.ann1.02894U Arachis hypogaea HOM05D002268 ORTHO05D006937 3.8e-205 718.4 475 73.3
arahy.Tifrunner.gnm1.ann1.AYE0CN Arachis hypogaea HOM05D002268 ORTHO05D006937 6.4e-205 717.6 474 73.6
Lalb_Chr19g0138111 Lupinus albus HOM05D002268 ORTHO05D006937 6.4e-205 717.6 437 77.3
Solyc09g074100.4 Solanum lycopersicum HOM05D002268 ORTHO05D006937 6.4e-205 717.6 451 75.6
Ah.04g161910 Amaranthus hybridus HOM05D002268 ORTHO05D006937 8.4e-205 717.2 474 75.9
CAN.G956.10 Capsicum annuum HOM05D002268 ORTHO05D006937 1.1e-204 716.8 468 73.7
PGSC0003DMG400003844 Solanum tuberosum HOM05D002268 ORTHO05D006937 1.4e-204 716.5 451 75.6
arahy.Tifrunner.gnm1.ann1.6XYC84 Arachis hypogaea HOM05D002268 ORTHO05D006937 7.1e-204 714.1 483 72.9
Sopen09g028920 Solanum pennellii HOM05D002268 ORTHO05D006937 7.1e-204 714.1 451 75.4
Lj3g0006923 Lotus japonicus HOM05D002268 ORTHO05D006937 1.2e-203 713.4 429 77.6
AUR62019294 Chenopodium quinoa HOM05D002268 ORTHO05D006937 2.1e-203 712.6 402 83.1
Gohir.D05G072000 Gossypium hirsutum HOM05D002268 ORTHO05D006937 2.1e-203 712.6 486 71.6
Hma1.2p1_0861F.1_g229700 Hydrangea macrophylla HOM05D002268 ORTHO05D006937 6.0e-203 711.1 415 82.2
Glyma.11G133500 Glycine max HOM05D002268 ORTHO05D006937 7.9e-203 710.7 449 75.5
EL10Ac4g10259 Beta vulgaris HOM05D002268 ORTHO05D006937 3.0e-202 708.8 473 74.8
EL10Ac4g10275 Beta vulgaris HOM05D002268 ORTHO05D006937 3.0e-202 708.8 473 74.8
vmacro19340 Vaccinium macrocarpon HOM05D002268 ORTHO05D006937 3.0e-202 708.8 463 75.8
Nn7g36125 Nelumbo nucifera HOM05D002268 ORTHO05D006937 3.9e-202 708.4 475 72.8
Potri.001G259000 Populus trichocarpa HOM05D002268 ORTHO05D006937 3.9e-202 708.4 475 74.1
Rhsim01G0191500 Rhododendron simsii HOM05D002268 ORTHO05D006937 3.9e-202 708.4 476 73.7
Medtr4g065023 Medicago truncatula HOM05D002268 ORTHO05D006937 2.5e-201 705.7 428 78.0
Phvul.011G059600 Phaseolus vulgaris HOM05D002268 ORTHO05D006937 1.6e-200 703.0 448 75.4
Lj2A631G13 Lonicera japonica HOM05D002268 ORTHO05D006937 3.6e-200 701.8 491 70.9
Psat7g212760 Pisum sativum HOM05D002268 ORTHO05D006937 3.6e-200 701.8 469 73.1
Aqoxy1G00300 Aquilegia oxysepala HOM05D002268 ORTHO05D006937 6.2e-200 701.0 480 71.5
Eucgr.B03681 Eucalyptus grandis HOM05D002268 ORTHO05D006937 6.2e-200 701.0 402 82.1
Cc09_g04150 Coffea canephora HOM05D002268 ORTHO05D006937 2.4e-199 699.1 493 70.8
Lsat_1_v5_gn_2_97721 Lactuca sativa HOM05D002268 ORTHO05D006937 2.4e-199 699.1 468 73.5
Aa31LG10G3500 Aethionema arabicum HOM05D002268 ORTHO05D006937 4.0e-199 698.4 467 73.2
DCAR_000723 Daucus carota HOM05D002268 ORTHO05D006937 9.0e-199 697.2 455 73.4
VMungo1127G0743 Vigna mungo HOM05D002268 ORTHO05D006937 2.0e-198 696.0 448 75.0
AL1G59110 Arabidopsis lyrata HOM05D002268 ORTHO05D006937 3.4e-198 695.3 472 72.5
BcaB02g11231 Brassica carinata HOM05D002268 ORTHO05D006937 1.3e-197 693.3 480 70.6
HanXRQChr07g0197481 Helianthus annuus HOM05D002268 ORTHO05D006937 1.3e-197 693.3 408 79.9
RcHm_v2.0_Chr7g0231131 Rosa chinensis HOM05D002268 ORTHO05D006937 1.3e-197 693.3 475 73.1
CARHR041380 Cardamine hirsuta HOM05D002268 ORTHO05D006937 2.2e-197 692.6 473 71.7
Thhalv10011432m.g Eutrema salsugineum HOM05D002268 ORTHO05D006937 1.1e-196 690.3 474 70.9
Sp1g37990 Schrenkiella parvula HOM05D002268 ORTHO05D006937 1.1e-196 690.3 422 77.5
AT1G51310 Arabidopsis thaliana HOM05D002268 ORTHO05D006937 4.2e-196 688.3 483 70.6
Carub.0001s4017 Capsella rubella HOM05D002268 ORTHO05D006937 7.1e-196 687.6 467 73.0
Actinidia06337 Actinidia chinensis HOM05D002268 ORTHO05D006937 9.3e-196 687.2 443 76.3
Carub.0008s0647 Capsella rubella HOM05D002268 ORTHO05D006937 1.2e-195 686.8 462 73.4
ECA238G2081 Erigeron canadensis HOM05D002268 ORTHO05D006937 3.5e-195 685.3 442 74.0
Migut.N02313 Erythranthe guttata HOM05D002268 ORTHO05D006937 3.5e-195 685.3 472 71.4
HPP92_009580 Vanilla planifolia HOM05D002268 ORTHO05D006937 6.0e-195 684.5 476 70.0
BraA08t32327Z Brassica rapa HOM05D002268 ORTHO05D006937 5.1e-194 681.4 489 70.1
FAN18G3947 Fragaria x ananassa HOM05D002268 ORTHO05D006937 6.7e-194 681.0 459 72.8
PSO384G3396 Papaver somniferum HOM05D002268 ORTHO05D006937 1.1e-193 680.2 426 77.0
PSO339G2995 Papaver somniferum HOM05D002268 ORTHO05D006937 3.3e-193 678.7 426 76.5
A08p02940 Brassica napus HOM05D002268 ORTHO05D006937 1.6e-192 676.4 490 70.2
SalBow5G0100 Salvia bowleyana HOM05D002268 ORTHO05D006937 4.8e-192 674.9 503 69.0
Oeu043297.4 Olea europaea HOM05D002268 ORTHO05D006937 8.1e-192 674.1 495 68.1
FvH4_5g33050 Fragaria vesca HOM05D002268 ORTHO05D006937 3.1e-191 672.2 476 70.6
BcaC01g01260 Brassica carinata HOM05D002268 ORTHO05D006937 5.3e-191 671.4 422 75.8
C03p89920 Brassica napus HOM05D002268 ORTHO05D006937 2.0e-190 669.5 422 75.4
BolC3t21311H Brassica oleracea HOM05D002268 ORTHO05D006937 2.0e-190 669.5 422 75.4
AUR62000114 Chenopodium quinoa HOM05D002268 ORTHO05D006937 2.2e-189 666.0 453 72.4
Manes.06G165000 Manihot esculenta HOM05D002268 ORTHO05D006937 2.9e-189 665.6 461 73.1
TPR.G35035 Trifolium pratense HOM05D002268 ORTHO05D006937 6.5e-189 664.5 422 74.9
ATR0605G089 Amborella trichopoda HOM05D002268 ORTHO05D006937 3.0e-186 655.6 395 77.0
Os03g0174600 Oryza sativa ssp. japonica HOM05D002268 ORTHO05D006937 1.3e-184 650.2 493 65.5
Zm00001eb005670 Zea mays HOM05D002268 ORTHO05D006937 1.3e-184 650.2 473 66.2
MBI04_g17077_MAGBIO Magnolia biondii HOM05D002268 ORTHO05D006937 6.2e-184 647.9 469 69.9
Sabra16G0158600 Salix brachista HOM05D002268 ORTHO05D006937 1.8e-183 646.4 475 69.3
A05p19700 Brassica napus HOM05D002268 ORTHO05D006937 8.4e-181 637.5 434 71.9
CSS0013347 Camellia sinensis var. sinensis HOM05D002268 ORTHO05D006937 1.4e-180 636.7 358 82.7
SGA_v2.0_scaffold42G16104 Striga asiatica HOM05D002268 ORTHO05D006937 4.8e-176 621.7 467 65.7
Hund22033 Selenicereus undatus HOM05D002268 ORTHO05D006937 3.9e-170 602.1 612 55.6
BcaC05g27353 Brassica carinata HOM05D002268 ORTHO05D006937 5.7e-169 598.2 365 75.9
CDE04G2511 Ceratophyllum demersum HOM05D002268 ORTHO05D006937 7.4e-169 597.8 453 65.3
Thecc.09G232700 Theobroma cacao HOM05D002268 ORTHO05D006937 2.7e-163 579.3 387 73.4
Lsat_1_v5_gn_2_132680 Lactuca sativa HOM05D002268 ORTHO05D006937 2.6e-161 572.8 406 70.2
BolC5t32017H Brassica oleracea HOM05D002268 ORTHO05D006937 9.7e-161 570.9 493 60.4
CSS0030827 Camellia sinensis var. sinensis HOM05D002268 ORTHO05D006937 5.7e-153 545.0 430 64.4
C05p32860 Brassica napus HOM05D002268 ORTHO05D006937 7.7e-150 534.6 472 59.3
Ciclev10006706m.g Citrus clementina HOM05D002268 ORTHO05D006937 5.0e-141 505.4 494 57.7
SMO331G0070 Selaginella moellendorffii HOM05D002268 ORTHO05D006937 3.0e-138 496.1 379 62.3
SEGI_13867 Sequoiadendron giganteum HOM05D002268 ORTHO05D006937 1.5e-137 493.8 349 65.9
Hma1.2p1_0861F.1_g229710 Hydrangea macrophylla HOM05D002268 ORTHO05D006937 7.5e-137 491.5 273 84.6
Dinv22182 Davidia involucrata HOM05D002268 ORTHO05D006937 1.7e-136 490.3 257 87.5
Pp3c15_1840 Physcomitrium patens HOM05D002268 ORTHO05D006937 1.8e-135 486.9 442 57.7
AagrBONN_evm.TU.Sc2ySwM_340.361 Anthoceros agrestis HOM05D002268 ORTHO05D006937 1.7e-133 480.3 452 54.9
Mapoly0129s0019 Marchantia polymorpha HOM05D002268 ORTHO05D006937 4.7e-131 472.2 421 55.3
Glyma.12G057700 Glycine max HOM05D002268 ORTHO05D006937 5.9e-126 455.3 293 75.1
FAN08G3580 Fragaria x ananassa HOM05D002268 ORTHO05D006937 6.8e-122 441.8 335 66.9
TAR369G0718 Trochodendron aralioides HOM05D002268 ORTHO05D006937 4.9e-120 435.6 257 80.2
Peaxi162Scf00004g00224 Petunia axillaris HOM05D002268 ORTHO05D006937 3.5e-118 429.5 246 81.3
MCO02G416 Micromonas commoda HOM05D002268 ORTHO05D006937 1.0e-117 427.9 442 50.7
FAN04G1610 Fragaria x ananassa HOM05D002268 ORTHO05D006937 2.5e-116 423.3 336 63.4
PRCOL_00001138 Prasinoderma coloniale HOM05D002268 ORTHO05D006937 1.8e-114 417.2 384 54.7
Actinidia26439 Actinidia chinensis HOM05D002268 ORTHO05D006937 3.5e-102 376.3 235 77.4
AagrBONN_evm.TU.Sc2ySwM_368.606 Anthoceros agrestis HOM05D002268 ORTHO05D006937 6.0e-102 375.6 414 49.0
Cre14.g628000 Chlamydomonas reinhardtii HOM05D002268 ORTHO05D006937 1.9e-100 370.5 537 40.0
CBR_g40742 Chara braunii HOM05D002268 ORTHO05D006937 2.1e-94 350.5 431 46.2
Gohir.A05G069100 Gossypium hirsutum HOM05D002268 ORTHO05D006937 2.6e-89 333.6 285 61.8
unitig_21.g20901 Utricularia gibba HOM05D002268 ORTHO05D006937 7.9e-70 268.9 161 76.4
unitig_21.g20902 Utricularia gibba HOM05D002268 ORTHO05D007950 2.8e-67 260.4 192 65.6
BcaB04g17220 Brassica carinata HOM05D002268 ORTHO05D006937 4.1e-66 256.5 175 70.3
Hma1.2p1_0861F.1_g229720 Hydrangea macrophylla HOM05D002268 ORTHO05D006937 1.0e-56 225.3 140 77.9
MSTRG.17590 Avicennia marina HOM05D002268 ORTHO05D006937 7.9e-54 215.7 206 59.2
BcaC01g01262 Brassica carinata HOM05D002268 ORTHO05D006937 3.7e-51 206.8 288 42.0
C03p89950 Brassica napus HOM05D002268 ORTHO05D001336 1.8e-50 204.5 183 56.8
CBR_g19922 Chara braunii HOM05D002268 ORTHO05D021278 3.4e-49 200.3 372 34.4
AagrBONN_evm.TU.Sc2ySwM_117.3752 Anthoceros agrestis HOM05D002268 ORTHO05D021278 4.5e-49 199.9 329 35.6
Pp3c4_6690 Physcomitrium patens HOM05D002268 ORTHO05D021278 2.9e-48 197.2 439 30.5
BolC3t21314H Brassica oleracea HOM05D002268 ORTHO05D006937 7.9e-46 189.1 183 54.1
CSS0037797 Camellia sinensis var. sinensis HOM05D002268 ORTHO05D006937 2.8e-43 180.6 115 72.2
PRCOL_00001597 Prasinoderma coloniale HOM05D002268 ORTHO05D021278 2.6e-41 174.1 403 31.5
Mapoly0010s0199 Marchantia polymorpha HOM05D002268 ORTHO05D021278 4.5e-41 173.3 386 32.1
MCO12G105 Micromonas commoda HOM05D002268 ORTHO05D021278 4.5e-41 173.3 349 35.0
SEGI_07269 Sequoiadendron giganteum HOM05D002268 ORTHO05D006937 2.9e-40 170.6 115 69.6
BraA05t20874Z Brassica rapa HOM05D002268 ORTHO05D006937 4.1e-34 150.2 141 61.0
Lsat_1_v5_gn_1_117501 Lactuca sativa HOM05D002268 ORTHO05D006937 1.6e-33 148.3 74 85.1
C03p89940 Brassica napus HOM05D002268 ORTHO05D040778 9.8e-28 129.0 117 59.8
Nn3g21873 Nelumbo nucifera HOM05D002268 ORTHO05D006937 5.4e-26 123.2 92 66.3
BolC3t21313H Brassica oleracea HOM05D002268 ORTHO05D040778 1.2e-25 122.1 113 59.3
MELO3C029180.2 Cucumis melo HOM05D002268 ORTHO05D168145 5.9e-25 119.8 259 35.1
SEGI_39418 Sequoiadendron giganteum HOM05D002268 ORTHO05D006937 3.2e-23 114.0 112 49.1
A08p02920 Brassica napus HOM05D002268 ORTHO05D099342 8.6e-16 89.4 98 51.0
MELO3C032733.2 Cucumis melo HOM05D002268 ORTHO05D170637 7.3e-15 86.3 123 44.7
Duzib150G1137 Durio zibethinus HOM05D002268 ORTHO05D006937 4.7e-14 83.6 108 51.9
MELO3C035704.2 Cucumis melo HOM05D002268 ORTHO05D166817 7.8e-09 66.2 146 30.1
Actinidia23968 Actinidia chinensis HOM05D002268 ORTHO05D006937 3.9e-08 63.9 35 88.6
QL06p040831 Quercus lobata HOM05D002268 ORTHO05D006937 1.1e-07 62.4 31 80.6


User provided reference genes

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