Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR102G0426 Punica granatum HOM05D004020 ORTHO05D004735 0.0e+00 2067.0 1100 100.0
Cfa010130 Carpinus fangiana HOM05D004020 ORTHO05D004735 0.0e+00 1515.0 1139 71.2
CiPaw.14G105600 Carya illinoinensis HOM05D004020 ORTHO05D004735 0.0e+00 1506.9 1132 71.8
Thecc.09G295800 Theobroma cacao HOM05D004020 ORTHO05D004735 0.0e+00 1504.2 1117 72.4
COL.COLO4_19229 Corchorus olitorius HOM05D004020 ORTHO05D004735 0.0e+00 1489.6 1114 71.5
MD11G1151500 Malus domestica HOM05D004020 ORTHO05D004735 0.0e+00 1484.2 1127 71.2
TWI75G0197 Tripterygium wilfordii HOM05D004020 ORTHO05D004735 0.0e+00 1483.0 1139 69.6
Manes.11G154000 Manihot esculenta HOM05D004020 ORTHO05D004735 0.0e+00 1480.7 1130 70.5
Prupe.6G114700 Prunus persica HOM05D004020 ORTHO05D004735 0.0e+00 1478.8 1133 70.8
Ciclev10027713m.g Citrus clementina HOM05D004020 ORTHO05D004735 0.0e+00 1475.3 1129 69.6
Duzib168G0446 Durio zibethinus HOM05D004020 ORTHO05D004735 0.0e+00 1471.1 1117 71.0
Gorai.009G089000 Gossypium raimondii HOM05D004020 ORTHO05D004735 0.0e+00 1470.7 1131 70.5
Glyma.11G191100 Glycine max HOM05D004020 ORTHO05D004735 0.0e+00 1462.2 1126 69.0
RcHm_v2.0_Chr5g0056331 Rosa chinensis HOM05D004020 ORTHO05D004735 0.0e+00 1460.3 1127 69.6
Potri.001G212600 Populus trichocarpa HOM05D004020 ORTHO05D004735 0.0e+00 1458.0 1123 70.5
Sabra04G0148500 Salix brachista HOM05D004020 ORTHO05D004735 0.0e+00 1455.7 1122 70.2
MD03G1129700 Malus domestica HOM05D004020 ORTHO05D004735 0.0e+00 1453.3 1126 70.5
TAR633G0695 Trochodendron aralioides HOM05D004020 ORTHO05D004735 0.0e+00 1449.5 1141 68.3
Potri.009G002900 Populus trichocarpa HOM05D004020 ORTHO05D004735 0.0e+00 1448.3 1125 69.5
Glyma.12G083200 Glycine max HOM05D004020 ORTHO05D004735 0.0e+00 1445.3 1130 68.4
FvH4_3g30380 Fragaria vesca HOM05D004020 ORTHO05D004735 0.0e+00 1444.5 1127 69.6
MELO3C004814.2 Cucumis melo HOM05D004020 ORTHO05D004735 0.0e+00 1444.1 1107 68.8
Gohir.D05G087200 Gossypium hirsutum HOM05D004020 ORTHO05D004735 0.0e+00 1441.4 1131 69.1
Lj3g0000902 Lotus japonicus HOM05D004020 ORTHO05D004735 0.0e+00 1441.4 1133 67.7
CsaV3_1G014440 Cucumis sativus L. HOM05D004020 ORTHO05D004735 0.0e+00 1440.6 1107 68.7
CSS0033419 Camellia sinensis var. sinensis HOM05D004020 ORTHO05D004735 0.0e+00 1437.9 1130 68.1
Atru.chr3.3492 Acer truncatum HOM05D004020 ORTHO05D004735 0.0e+00 1436.0 1145 67.7
Psat7g191400 Pisum sativum HOM05D004020 ORTHO05D004735 0.0e+00 1431.0 1124 68.3
Ca_19329_v3 Cicer arietinum L. HOM05D004020 ORTHO05D004735 0.0e+00 1429.5 1126 67.7
Gohir.A05G084400 Gossypium hirsutum HOM05D004020 ORTHO05D004735 0.0e+00 1428.3 1143 68.2
Gohir.D07G110000 Gossypium hirsutum HOM05D004020 ORTHO05D004735 0.0e+00 1427.2 1113 68.8
FAN21G0469 Fragaria x ananassa HOM05D004020 ORTHO05D004735 0.0e+00 1426.4 1121 69.0
TPR.G35043 Trifolium pratense HOM05D004020 ORTHO05D004735 0.0e+00 1424.1 1125 67.8
FAN11G1674 Fragaria x ananassa HOM05D004020 ORTHO05D004735 0.0e+00 1420.2 1150 68.1
Medtr4g056510 Medicago truncatula HOM05D004020 ORTHO05D004735 0.0e+00 1417.5 1122 67.5
Sed0021294 Sechium edule HOM05D004020 ORTHO05D004735 0.0e+00 1411.4 1109 67.8
Actinidia24157 Actinidia chinensis HOM05D004020 ORTHO05D004735 0.0e+00 1407.1 1132 67.0
Phvul.011G088000 Phaseolus vulgaris HOM05D004020 ORTHO05D004735 0.0e+00 1407.1 1120 66.8
Rhsim13G0102300 Rhododendron simsii HOM05D004020 ORTHO05D004735 0.0e+00 1407.1 1146 66.3
Actinidia07194 Actinidia chinensis HOM05D004020 ORTHO05D004735 0.0e+00 1405.6 1135 66.7
Duzib150G0506 Durio zibethinus HOM05D004020 ORTHO05D004735 0.0e+00 1404.0 1118 68.5
Lalb_Chr19g0136831 Lupinus albus HOM05D004020 ORTHO05D004735 0.0e+00 1402.5 1122 67.0
Lalb_Chr01g0004661 Lupinus albus HOM05D004020 ORTHO05D004735 0.0e+00 1402.1 1120 67.1
Nn2g13902 Nelumbo nucifera HOM05D004020 ORTHO05D004735 0.0e+00 1382.9 1134 66.3
THA.LOC104826398 Tarenaya hassleriana HOM05D004020 ORTHO05D004735 0.0e+00 1373.6 1125 66.3
AT2G27900 Arabidopsis thaliana HOM05D004020 ORTHO05D004735 0.0e+00 1363.6 1126 66.2
Aa31LG5G8160 Aethionema arabicum HOM05D004020 ORTHO05D004735 0.0e+00 1361.3 1125 64.7
Sopen11g026290 Solanum pennellii HOM05D004020 ORTHO05D004735 0.0e+00 1356.3 1107 67.4
AL4G22350 Arabidopsis lyrata HOM05D004020 ORTHO05D004735 0.0e+00 1352.8 1123 65.2
THA.LOC104800567 Tarenaya hassleriana HOM05D004020 ORTHO05D004735 0.0e+00 1351.7 1134 65.5
GSVIVG01031444001 Vitis vinifera HOM05D004020 ORTHO05D004735 0.0e+00 1351.3 1083 68.7
Carub.0004s0864 Capsella rubella HOM05D004020 ORTHO05D004735 0.0e+00 1350.5 1131 64.9
CAN.G644.49 Capsicum annuum HOM05D004020 ORTHO05D004735 0.0e+00 1347.8 1122 66.9
BcaB01g03084 Brassica carinata HOM05D004020 ORTHO05D004735 0.0e+00 1345.9 1124 65.0
Eucgr.B03912 Eucalyptus grandis HOM05D004020 ORTHO05D004735 0.0e+00 1325.5 999 71.2
A03p26460 Brassica napus HOM05D004020 ORTHO05D004735 0.0e+00 1325.1 1126 64.4
Nitab4.5_0000173g0340 Nicotiana tabacum HOM05D004020 ORTHO05D004735 0.0e+00 1323.5 1139 64.6
Sp4g10720 Schrenkiella parvula HOM05D004020 ORTHO05D004735 0.0e+00 1320.8 1129 63.6
Aqoxy2G01562 Aquilegia oxysepala HOM05D004020 ORTHO05D004735 0.0e+00 1317.0 1086 65.6
Thhalv10016162m.g Eutrema salsugineum HOM05D004020 ORTHO05D004735 0.0e+00 1317.0 1131 63.9
C03p31750 Brassica napus HOM05D004020 ORTHO05D004735 0.0e+00 1314.7 1125 64.2
Migut.D02305 Erythranthe guttata HOM05D004020 ORTHO05D004735 0.0e+00 1312.4 1110 66.5
BcaC01g04955 Brassica carinata HOM05D004020 ORTHO05D004735 0.0e+00 1308.5 1125 63.6
vmacro03245 Vaccinium macrocarpon HOM05D004020 ORTHO05D004735 0.0e+00 1302.0 1174 62.1
MSTRG.18711 Avicennia marina HOM05D004020 ORTHO05D004735 0.0e+00 1298.5 1114 63.7
BolC3t15517H Brassica oleracea HOM05D004020 ORTHO05D004735 0.0e+00 1297.7 1131 63.2
Cc01_g10110 Coffea canephora HOM05D004020 ORTHO05D004735 0.0e+00 1297.0 1090 64.0
PSO339G0247 Papaver somniferum HOM05D004020 ORTHO05D004735 0.0e+00 1291.9 1087 64.4
PSO801G0568 Papaver somniferum HOM05D004020 ORTHO05D004735 0.0e+00 1288.5 1085 64.2
ECA238G2607 Erigeron canadensis HOM05D004020 ORTHO05D004735 0.0e+00 1286.6 1063 64.6
HanXRQChr14g0451831 Helianthus annuus HOM05D004020 ORTHO05D004735 0.0e+00 1286.2 1124 62.8
Sc06g0008980 Simmondsia chinensis HOM05D004020 ORTHO05D004735 0.0e+00 1282.3 1105 63.9
EL10Ac9g20998 Beta vulgaris HOM05D004020 ORTHO05D004735 0.0e+00 1280.0 1153 62.1
Lsat_1_v5_gn_6_42101 Lactuca sativa HOM05D004020 ORTHO05D004735 0.0e+00 1271.1 1125 61.3
arahy.Tifrunner.gnm1.ann1.MMVL4X Arachis hypogaea HOM05D004020 ORTHO05D004735 0.0e+00 1268.8 1127 61.8
BraA04t17688Z Brassica rapa HOM05D004020 ORTHO05D004735 0.0e+00 1258.4 1078 63.6
arahy.Tifrunner.gnm1.ann1.533Y7U Arachis hypogaea HOM05D004020 ORTHO05D004735 0.0e+00 1257.3 1138 61.2
A04p21190 Brassica napus HOM05D004020 ORTHO05D004735 0.0e+00 1245.7 1078 63.4
BolC4t27237H Brassica oleracea HOM05D004020 ORTHO05D004735 0.0e+00 1237.2 1078 62.6
HanXRQChr02g0055251 Helianthus annuus HOM05D004020 ORTHO05D004735 0.0e+00 1234.9 1108 60.9
BcaC02g08224 Brassica carinata HOM05D004020 ORTHO05D004735 0.0e+00 1234.6 1080 62.4
C04p57020 Brassica napus HOM05D004020 ORTHO05D004735 0.0e+00 1228.0 1079 62.4
BcaB06g28175 Brassica carinata HOM05D004020 ORTHO05D004735 0.0e+00 1201.4 1067 61.9
CDE08G1223 Ceratophyllum demersum HOM05D004020 ORTHO05D004735 0.0e+00 1197.6 1072 61.2
Oeu007301.5 Olea europaea HOM05D004020 ORTHO05D004735 0.0e+00 1187.6 1271 54.5
ATR1158G033 Amborella trichopoda HOM05D004020 ORTHO05D004735 0.0e+00 1175.6 1082 59.3
Lsat_1_v5_gn_2_99000 Lactuca sativa HOM05D004020 ORTHO05D004735 0.0e+00 1164.4 1117 59.0
arahy.Tifrunner.gnm1.ann1.PN7A9Z Arachis hypogaea HOM05D004020 ORTHO05D004735 0.0e+00 1160.2 921 66.3
arahy.Tifrunner.gnm1.ann1.B084HG Arachis hypogaea HOM05D004020 ORTHO05D004735 0.0e+00 1157.1 921 65.7
CANSAT64G0934 Cannabis sativa HOM05D004020 ORTHO05D004735 0.0e+00 1134.4 1011 65.2
Os10g0546300 Oryza sativa ssp. japonica HOM05D004020 ORTHO05D004735 0.0e+00 1123.6 1071 56.9
ClCG01G012850 Citrullus lanatus HOM05D004020 ORTHO05D004735 0.0e+00 1116.7 943 64.6
Zm00001eb022740 Zea mays HOM05D004020 ORTHO05D004735 0.0e+00 1110.5 1083 57.1
MBI18_g10967_MAGBIO Magnolia biondii HOM05D004020 ORTHO05D004735 0.0e+00 1108.6 1089 58.1
SGA_v2.0_scaffold27G11582 Striga asiatica HOM05D004020 ORTHO05D004735 0.0e+00 1105.5 1351 50.9
CARHR120590 Cardamine hirsuta HOM05D004020 ORTHO05D004735 0.0e+00 1086.2 934 62.4
Hund07762 Selenicereus undatus HOM05D004020 ORTHO05D004735 1.5e-310 1069.7 1064 57.0
AUR62024038 Chenopodium quinoa HOM05D004020 ORTHO05D004735 3.1e-308 1062.0 1126 55.3
DCAR_031639 Daucus carota HOM05D004020 ORTHO05D004735 6.1e-288 994.6 925 59.7
Hund00854 Selenicereus undatus HOM05D004020 ORTHO05D004735 1.2e-283 980.3 1017 57.1
Peaxi162Scf00150g00916 Petunia axillaris HOM05D004020 ORTHO05D004735 4.9e-277 958.4 881 63.1
AUR62041305 Chenopodium quinoa HOM05D004020 ORTHO05D004735 5.6e-265 918.3 1037 53.4
BraA03t11860Z Brassica rapa HOM05D004020 ORTHO05D004735 9.6e-233 811.2 782 60.1
Mapoly0001s0255 Marchantia polymorpha HOM05D004020 ORTHO05D004735 8.4e-221 771.5 1126 41.3
Ah.01g015940 Amaranthus hybridus HOM05D004020 ORTHO05D004735 9.3e-220 768.1 647 63.7
SMO118G0476 Selaginella moellendorffii HOM05D004020 ORTHO05D004735 1.6e-219 767.3 1078 41.3
Pp3c5_16860 Physcomitrium patens HOM05D004020 ORTHO05D004735 7.9e-219 765.0 1114 41.1
Oeu008367.3 Olea europaea HOM05D004020 ORTHO05D004735 2.3e-218 763.5 886 53.2
Pp3c16_8720 Physcomitrium patens HOM05D004020 ORTHO05D004735 8.2e-216 755.0 1116 40.9
AagrBONN_evm.TU.Sc2ySwM_340.402 Anthoceros agrestis HOM05D004020 ORTHO05D004735 2.2e-213 746.9 1125 40.4
Lj2C1000T5 Lonicera japonica HOM05D004020 ORTHO05D004735 2.1e-211 740.3 786 56.0
AL4G12830 Arabidopsis lyrata HOM05D004020 ORTHO05D004735 2.3e-210 736.9 889 51.7
Dinv12567 Davidia involucrata HOM05D004020 ORTHO05D004735 1.9e-209 733.8 961 49.0
Lj2A1002G14 Lonicera japonica HOM05D004020 ORTHO05D004735 4.2e-204 716.1 638 61.3
AagrBONN_evm.TU.Sc2ySwM_117.107 Anthoceros agrestis HOM05D004020 ORTHO05D004735 4.1e-191 672.9 1025 38.3
Gohir.A07G106066 Gossypium hirsutum HOM05D004020 ORTHO05D004735 5.5e-188 662.5 519 66.7
SalBow6G5048 Salvia bowleyana HOM05D004020 ORTHO05D004735 8.8e-178 628.6 523 64.1
Haze_23514 Corylus avellana HOM05D004020 ORTHO05D004735 5.7e-177 625.9 645 56.9
Gorai.001G118200 Gossypium raimondii HOM05D004020 ORTHO05D004735 3.7e-176 623.2 420 77.6
Gohir.A07G106132 Gossypium hirsutum HOM05D004020 ORTHO05D004735 4.8e-176 622.9 429 76.9
unitig_746.g26602 Utricularia gibba HOM05D004020 ORTHO05D004735 1.5e-156 558.1 517 58.4
Lj2A1002G13 Lonicera japonica HOM05D004020 ORTHO05D004735 1.9e-127 461.5 401 64.3
Cpa.g.sc47.20 Carica papaya HOM05D004020 ORTHO05D004735 5.4e-127 459.9 416 62.7
HPP92_022569 Vanilla planifolia HOM05D004020 ORTHO05D004735 2.7e-118 431.0 344 66.9
Peaxi162Scf00150g00917 Petunia axillaris HOM05D004020 ORTHO05D004735 2.6e-105 387.9 228 81.6
unitig_746.g26604 Utricularia gibba HOM05D004020 ORTHO05D004735 6.7e-101 373.2 343 59.8
CBR_g49688 Chara braunii HOM05D004020 ORTHO05D004735 2.2e-99 368.2 820 32.3
SEGI_08231 Sequoiadendron giganteum HOM05D004020 ORTHO05D004735 1.2e-97 362.5 676 38.0
QL01p014670 Quercus lobata HOM05D004020 ORTHO05D004735 1.5e-89 335.5 351 52.4
CANSAT64G1975 Cannabis sativa HOM05D004020 ORTHO05D004735 1.1e-87 329.3 190 81.1
Rhsim04G0218400 Rhododendron simsii HOM05D004020 ORTHO05D004735 4.4e-84 317.4 324 57.4
Cpa.g.sc47.22 Carica papaya HOM05D004020 ORTHO05D004735 1.6e-78 298.9 230 70.0
MCO09G744 Micromonas commoda HOM05D004020 ORTHO05D004735 2.5e-71 275.0 1072 25.1
SHI06178 Sapria himalayana HOM05D004020 ORTHO05D004735 3.6e-70 271.2 516 37.0
Hma1.2p1_1225F.1_g268540 Hydrangea macrophylla HOM05D004020 ORTHO05D004735 6.3e-67 260.4 141 88.7
Haze_23513 Corylus avellana HOM05D004020 ORTHO05D004735 1.8e-66 258.8 190 71.6
PRCOL_00006567 Prasinoderma coloniale HOM05D004020 ORTHO05D004735 1.0e-64 253.1 1266 22.4
arahy.Tifrunner.gnm1.ann1.FLM5Q5 Arachis hypogaea HOM05D004020 ORTHO05D004735 2.7e-62 245.0 198 59.6
HPP92_022573 Vanilla planifolia HOM05D004020 ORTHO05D004735 2.7e-62 245.0 145 81.4
Haze_23515 Corylus avellana HOM05D004020 ORTHO05D004735 4.7e-62 244.2 141 84.4
C06p19250 Brassica napus HOM05D004020 ORTHO05D004735 3.4e-60 238.0 239 54.4
C06p24240 Brassica napus HOM05D004020 ORTHO05D004735 5.9e-57 227.3 256 50.8
FAN11G0203 Fragaria x ananassa HOM05D004020 ORTHO05D004735 4.4e-52 211.1 167 73.1
FAN21G0688 Fragaria x ananassa HOM05D004020 ORTHO05D004735 4.4e-52 211.1 167 73.1
Lj2C1000T6 Lonicera japonica HOM05D004020 ORTHO05D004735 2.2e-51 208.8 116 87.1
Haze_23512 Corylus avellana HOM05D004020 ORTHO05D004735 6.3e-51 207.2 141 80.1
DCAR_031637 Daucus carota HOM05D004020 ORTHO05D004735 1.8e-50 205.7 118 84.7
TAR633G2769 Trochodendron aralioides HOM05D004020 ORTHO05D004735 9.2e-50 203.4 116 84.5
Pp3c25_5430 Physcomitrium patens HOM05D004020 ORTHO05D004735 4.3e-47 194.5 485 32.6
AL580U10010 Arabidopsis lyrata HOM05D004020 ORTHO05D004735 3.4e-44 184.9 140 73.6
TAR476G0003 Trochodendron aralioides HOM05D004020 ORTHO05D004735 1.1e-42 179.9 132 76.5
SHI06179 Sapria himalayana HOM05D004020 ORTHO05D004735 1.3e-40 172.9 119 70.6
MD01G1172900 Malus domestica HOM05D004020 ORTHO05D004735 1.7e-40 172.6 129 75.2
Rhsim04G0145900 Rhododendron simsii HOM05D000045 ORTHO05D003665 2.3e-37 162.2 116 73.3
unitig_746.g26603 Utricularia gibba HOM05D004020 ORTHO05D004735 9.8e-36 156.8 112 66.1
Cpa.g.sc47.18 Carica papaya HOM05D004020 ORTHO05D004735 1.3e-35 156.4 82 89.0
Cre10.g443350 Chlamydomonas reinhardtii HOM05D004020 ORTHO05D004735 2.2e-35 155.6 1128 20.7
ClCG01G012880 Citrullus lanatus HOM05D004020 ORTHO05D004735 8.3e-35 153.7 83 84.3
CANSAT64G1073 Cannabis sativa HOM05D004020 ORTHO05D004735 1.4e-34 152.9 83 84.3
Nitab4.5_0027393g0010 Nicotiana tabacum HOM05D004020 ORTHO05D004735 6.0e-33 147.5 189 50.8
SEGI_13700 Sequoiadendron giganteum HOM05D004020 ORTHO05D004735 5.2e-29 134.4 112 65.2
Nitab4.5_0005230g0050 Nicotiana tabacum HOM05D004020 ORTHO05D004735 8.9e-29 133.7 152 53.3
arahy.Tifrunner.gnm1.ann1.LCV131 Arachis hypogaea HOM05D004020 ORTHO05D004735 2.2e-27 129.0 117 55.6
BcaC01g02437 Brassica carinata HOM05D004020 ORTHO05D004735 4.1e-26 124.8 148 47.3
FAN16G3550 Fragaria x ananassa HOM05D004020 ORTHO05D004735 1.2e-25 123.2 88 80.7
C03p65310 Brassica napus HOM05D004020 ORTHO05D004735 6.0e-25 120.9 134 50.0
Zm00001eb064060 Zea mays HOM05D002996 ORTHO05D003536 6.2e-22 110.9 115 53.9
HPP92_022568 Vanilla planifolia HOM05D004020 ORTHO05D004735 6.8e-21 107.5 102 54.9
Zm00001eb302500 Zea mays HOM05D004020 ORTHO05D004735 1.2e-20 106.7 120 55.0
SHI06174 Sapria himalayana HOM05D004020 ORTHO05D004735 2.0e-20 105.9 95 60.0
SHI06176 Sapria himalayana HOM05D004020 ORTHO05D004735 1.7e-19 102.8 85 61.2
Zm00001eb218380 Zea mays HOM05D002996 ORTHO05D003536 1.2e-14 86.7 87 49.4
Lsat_1_v5_gn_8_150800 Lactuca sativa HOM05D003321 ORTHO05D033839 8.4e-11 73.9 77 54.5
Nitab4.5_0011593g0020 Nicotiana tabacum HOM05D004020 ORTHO05D004735 2.3e-08 65.9 43 74.4
SHI06173 Sapria himalayana HOM05D004020 ORTHO05D003975 3.9e-08 65.1 59 62.7
SHI06177 Sapria himalayana HOM05D004020 ORTHO05D004735 6.2e-06 57.8 68 45.6


User provided reference genes

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