Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR102G0149 Punica granatum HOM05D004931 ORTHO05D006579 9.6e-167 590.1 305 100.0
Prupe.1G215300 Prunus persica HOM05D004931 ORTHO05D006579 3.5e-132 475.3 305 77.0
Thecc.02G192700 Theobroma cacao HOM05D004931 ORTHO05D006579 5.0e-131 471.5 305 76.7
CiPaw.05G101400 Carya illinoinensis HOM05D004931 ORTHO05D006579 6.5e-131 471.1 305 76.1
Actinidia34703 Actinidia chinensis HOM05D004931 ORTHO05D006579 2.5e-130 469.2 306 76.5
Dinv06619 Davidia involucrata HOM05D004931 ORTHO05D006579 3.6e-129 465.3 305 75.4
Cfa009447 Carpinus fangiana HOM05D004931 ORTHO05D006579 1.0e-128 463.8 305 76.7
COL.COLO4_21767 Corchorus olitorius HOM05D004931 ORTHO05D006579 1.0e-128 463.8 305 76.1
Gohir.D02G175400 Gossypium hirsutum HOM05D004931 ORTHO05D006579 3.0e-128 462.2 305 75.7
Gohir.A03G152300 Gossypium hirsutum HOM05D004931 ORTHO05D006579 8.8e-128 460.7 305 75.7
TAR622G0753 Trochodendron aralioides HOM05D004931 ORTHO05D006579 2.0e-127 459.5 305 74.1
Gorai.005G197000 Gossypium raimondii HOM05D004931 ORTHO05D006579 2.6e-127 459.1 305 75.4
Atru.chr12.1413 Acer truncatum HOM05D004931 ORTHO05D006579 4.4e-127 458.4 305 75.1
CSS0024647 Camellia sinensis var. sinensis HOM05D004931 ORTHO05D006579 5.7e-127 458.0 305 75.1
QL03p049374 Quercus lobata HOM05D004931 ORTHO05D006579 9.8e-127 457.2 327 70.9
Haze_12500 Corylus avellana HOM05D004931 ORTHO05D006579 1.3e-126 456.8 306 75.5
FvH4_4g22670 Fragaria vesca HOM05D004931 ORTHO05D006579 2.2e-126 456.1 309 75.1
Ciclev10005352m.g Citrus clementina HOM05D004931 ORTHO05D006579 1.1e-125 453.8 304 74.0
Cpa.g.sc38.82 Carica papaya HOM05D004931 ORTHO05D006579 2.4e-125 452.6 305 74.4
Nn3g16276 Nelumbo nucifera HOM05D004931 ORTHO05D006579 4.1e-125 451.8 306 74.5
TAR374G0634 Trochodendron aralioides HOM05D004931 ORTHO05D006579 7.0e-125 451.1 305 73.4
PSO017G2176 Papaver somniferum HOM05D004931 ORTHO05D006579 3.5e-124 448.7 300 73.0
Manes.08G101500 Manihot esculenta HOM05D004931 ORTHO05D006579 1.0e-123 447.2 308 71.8
TWI36G0173 Tripterygium wilfordii HOM05D004931 ORTHO05D006579 2.2e-123 446.0 311 73.3
PSO478G0594 Papaver somniferum HOM05D004931 ORTHO05D006579 3.8e-123 445.3 300 72.7
MD00G1177400 Malus domestica HOM05D004931 ORTHO05D006579 4.2e-122 441.8 270 80.7
AUR62005713 Chenopodium quinoa HOM05D004931 ORTHO05D006579 2.1e-121 439.5 294 73.5
Sed0000722 Sechium edule HOM05D004931 ORTHO05D006579 2.1e-121 439.5 305 69.5
CANSAT01G2308 Cannabis sativa HOM05D004931 ORTHO05D006579 4.7e-121 438.3 306 72.2
vmacro10419 Vaccinium macrocarpon HOM05D004931 ORTHO05D006579 8.0e-121 437.6 322 73.0
VMungo0540G0694 Vigna mungo HOM05D004931 ORTHO05D006579 8.0e-121 437.6 305 71.5
Aqoxy5G03136 Aquilegia oxysepala HOM05D004931 ORTHO05D006579 1.4e-120 436.8 301 72.1
EL10Ac6g13609 Beta vulgaris HOM05D004931 ORTHO05D006579 2.3e-120 436.0 298 73.2
MELO3C017814.2 Cucumis melo HOM05D004931 ORTHO05D006579 2.3e-120 436.0 305 70.8
ECA238G3692 Erigeron canadensis HOM05D004931 ORTHO05D006579 2.3e-120 436.0 307 72.0
Cc11_g15020 Coffea canephora HOM05D004931 ORTHO05D006579 3.0e-120 435.6 306 71.2
CsaV3_4G002250 Cucumis sativus L. HOM05D004931 ORTHO05D006579 3.0e-120 435.6 305 70.8
Manes.09G188000 Manihot esculenta HOM05D004931 ORTHO05D006579 5.2e-120 434.9 305 70.8
Potri.003G162600 Populus trichocarpa HOM05D004931 ORTHO05D006579 5.2e-120 434.9 308 72.4
MD13G1130400 Malus domestica HOM05D004931 ORTHO05D006579 1.5e-119 433.3 278 77.7
GSVIVG01001087001 Vitis vinifera HOM05D004931 ORTHO05D006579 1.5e-119 433.3 307 70.4
Lsat_1_v5_gn_2_17061 Lactuca sativa HOM05D004931 ORTHO05D006579 2.0e-119 433.0 312 73.4
arahy.Tifrunner.gnm1.ann1.BF7HNV Arachis hypogaea HOM05D004931 ORTHO05D006579 5.7e-119 431.4 305 70.5
arahy.Tifrunner.gnm1.ann1.Q671IP Arachis hypogaea HOM05D004931 ORTHO05D006579 5.7e-119 431.4 305 70.5
MSTRG.455 Avicennia marina HOM05D004931 ORTHO05D006579 1.3e-118 430.3 305 70.5
Glyma.15G065800 Glycine max HOM05D004931 ORTHO05D006579 1.3e-118 430.3 305 70.8
Duzib248G0794 Durio zibethinus HOM05D004931 ORTHO05D006579 2.8e-118 429.1 270 78.1
Rhsim09G0128100 Rhododendron simsii HOM05D004931 ORTHO05D006579 2.8e-118 429.1 358 65.1
Phvul.006G193900 Phaseolus vulgaris HOM05D004931 ORTHO05D006579 3.7e-118 428.7 306 70.6
Glyma.13G248100 Glycine max HOM05D004931 ORTHO05D006579 6.3e-118 427.9 305 70.5
AUR62028841 Chenopodium quinoa HOM05D004931 ORTHO05D006579 1.1e-117 427.2 270 77.8
HanXRQChr17g0559151 Helianthus annuus HOM05D004931 ORTHO05D006579 1.1e-117 427.2 315 68.9
Medtr2g011420 Medicago truncatula HOM05D004931 ORTHO05D006579 2.4e-117 426.0 305 71.1
SGA_v2.0_scaffold80G25951 Striga asiatica HOM05D004931 ORTHO05D006579 3.1e-117 425.6 305 69.5
SGA_v2.0_scaffold81G25976 Striga asiatica HOM05D004931 ORTHO05D006579 3.1e-117 425.6 313 68.7
Migut.K01057 Erythranthe guttata HOM05D004931 ORTHO05D006579 5.4e-117 424.9 308 69.2
Potri.001G067400 Populus trichocarpa HOM05D004931 ORTHO05D006579 7.0e-117 424.5 260 80.0
THA.LOC104814207 Tarenaya hassleriana HOM05D004931 ORTHO05D006579 7.0e-117 424.5 303 69.6
Lj6g0004184 Lotus japonicus HOM05D004931 ORTHO05D006579 1.6e-116 423.3 305 69.5
TPR.G19613 Trifolium pratense HOM05D004931 ORTHO05D006579 1.6e-116 423.3 305 70.2
FAN17G1056 Fragaria x ananassa HOM05D004931 ORTHO05D006579 2.0e-116 422.9 276 76.8
Lj6A838G27 Lonicera japonica HOM05D004931 ORTHO05D006579 2.0e-116 422.9 342 64.9
Thhalv10008031m.g Eutrema salsugineum HOM05D004931 ORTHO05D006579 7.7e-116 421.0 301 68.1
Sp1g24310 Schrenkiella parvula HOM05D004931 ORTHO05D006579 1.7e-115 419.9 304 69.4
Carub.0001s2655 Capsella rubella HOM05D004931 ORTHO05D006579 2.9e-115 419.1 304 70.4
Ca_00224_v3 Cicer arietinum L. HOM05D004931 ORTHO05D006579 2.9e-115 419.1 300 69.3
Solyc04g045480.3 Solanum lycopersicum HOM05D004931 ORTHO05D006579 2.9e-115 419.1 304 68.4
Psat1g210240 Pisum sativum HOM05D004931 ORTHO05D006579 5.0e-115 418.3 305 68.5
CARHR027590 Cardamine hirsuta HOM05D004931 ORTHO05D006579 2.5e-114 416.0 304 68.8
AL1G41640 Arabidopsis lyrata HOM05D004931 ORTHO05D006579 2.1e-113 412.9 305 68.5
RcHm_v2.0_Chr4g0428911 Rosa chinensis HOM05D004931 ORTHO05D006579 2.8e-113 412.5 249 81.5
Sopen04g017340 Solanum pennellii HOM05D004931 ORTHO05D006579 2.8e-113 412.5 280 71.1
Sc14g0009240 Simmondsia chinensis HOM05D004931 ORTHO05D006579 1.0e-112 410.6 305 66.6
SalBow2G3164 Salvia bowleyana HOM05D004931 ORTHO05D006579 1.4e-112 410.2 318 66.0
AT1G28120 Arabidopsis thaliana HOM05D004931 ORTHO05D006579 6.8e-112 407.9 304 68.4
ClCG07G011910 Citrullus lanatus HOM05D004931 ORTHO05D006579 8.9e-112 407.5 309 68.0
BcaB03g12136 Brassica carinata HOM05D004931 ORTHO05D006579 1.2e-111 407.1 305 68.2
Aa31sc45G20 Aethionema arabicum HOM05D004931 ORTHO05D006579 2.6e-111 406.0 304 67.4
FAN07G1868 Fragaria x ananassa HOM05D004931 ORTHO05D006579 7.5e-111 404.4 288 72.6
CDE05G1203 Ceratophyllum demersum HOM05D004931 ORTHO05D006579 1.3e-110 403.7 280 69.3
CDE05G3195 Ceratophyllum demersum HOM05D004931 ORTHO05D006579 2.2e-110 402.9 280 68.9
Nitab4.5_0007183g0010 Nicotiana tabacum HOM05D004931 ORTHO05D006579 6.4e-110 401.4 315 65.1
BolC3t19725H Brassica oleracea HOM05D004931 ORTHO05D006579 7.0e-109 397.9 305 67.2
Os08g0537800 Oryza sativa ssp. japonica HOM05D004931 ORTHO05D006579 9.2e-109 397.5 265 71.7
HPP92_011736 Vanilla planifolia HOM05D004931 ORTHO05D006579 2.7e-108 396.0 298 65.8
BcaC01g00008 Brassica carinata HOM05D004931 ORTHO05D006579 3.5e-108 395.6 305 66.6
Ah.02g131420 Amaranthus hybridus HOM05D004931 ORTHO05D006579 4.3e-106 388.7 307 65.8
BcaB03g13953 Brassica carinata HOM05D004931 ORTHO05D006579 9.5e-106 387.5 305 66.2
DCAR_024966 Daucus carota HOM05D004931 ORTHO05D006579 6.2e-105 384.8 305 64.3
C03p74760 Brassica napus HOM05D004931 ORTHO05D006579 4.0e-104 382.1 330 61.8
unitig_8.g2895 Utricularia gibba HOM05D004931 ORTHO05D006579 5.2e-104 381.7 305 63.0
A08p25870 Brassica napus HOM05D004931 ORTHO05D006579 8.9e-104 380.9 330 61.8
SEGI_13679 Sequoiadendron giganteum HOM05D004931 ORTHO05D006579 4.4e-103 378.6 282 67.0
FAN12G1488 Fragaria x ananassa HOM05D004931 ORTHO05D006579 1.3e-102 377.1 276 71.0
MBI07_g35974_MAGBIO Magnolia biondii HOM05D004931 ORTHO05D006579 6.4e-102 374.8 293 66.2
ATR0582G144 Amborella trichopoda HOM05D004931 ORTHO05D006579 2.0e-100 369.8 290 64.1
BraA08t34541Z Brassica rapa HOM05D004931 ORTHO05D006579 1.7e-99 366.7 330 60.9
HPP92_011677 Vanilla planifolia HOM05D004931 ORTHO05D006579 2.3e-99 366.3 281 64.8
Zm00001eb175560 Zea mays HOM05D004931 ORTHO05D006579 9.5e-98 360.9 261 68.6
BolC7t42231H Brassica oleracea HOM05D004931 ORTHO05D006579 4.7e-97 358.6 259 69.1
Hund26708 Selenicereus undatus HOM05D004931 ORTHO05D006579 4.7e-97 358.6 263 68.8
CAN.G465.9 Capsicum annuum HOM05D004931 ORTHO05D006579 6.2e-97 358.2 264 67.8
C07p17280 Brassica napus HOM05D004931 ORTHO05D006579 3.1e-96 355.9 259 69.1
Peaxi162Scf00128g01757 Petunia axillaris HOM05D004931 ORTHO05D006579 3.4e-95 352.4 252 69.8
Nitab4.5_0001408g0040 Nicotiana tabacum HOM05D004931 ORTHO05D006579 4.1e-93 345.5 264 66.3
Mapoly0005s0248 Marchantia polymorpha HOM05D004931 ORTHO05D006579 3.5e-92 342.4 275 61.1
BcaC06g35334 Brassica carinata HOM05D004931 ORTHO05D006579 4.6e-92 342.0 259 66.8
Sabra01G0046800 Salix brachista HOM05D004931 ORTHO05D006579 1.1e-90 337.4 250 70.0
AagrBONN_evm.TU.Sc2ySwM_368.2426 Anthoceros agrestis HOM05D004931 ORTHO05D006579 1.2e-89 334.0 250 64.8
SMO358G0085 Selaginella moellendorffii HOM05D004931 ORTHO05D006579 2.1e-89 333.2 250 63.6
Dinv02758 Davidia involucrata HOM05D004931 ORTHO05D006579 1.1e-85 320.9 217 72.8
Pp3c5_2520 Physcomitrium patens HOM05D004931 ORTHO05D006579 9.2e-85 317.8 272 57.7
MBI10_g42797_MAGBIO Magnolia biondii HOM05D004931 ORTHO05D006579 5.1e-83 312.0 271 58.3
Actinidia31350 Actinidia chinensis HOM05D004931 ORTHO05D006579 2.5e-82 309.7 306 57.2
Duzib132G0410 Durio zibethinus HOM05D004931 ORTHO05D006579 5.6e-82 308.5 257 62.6
Sed0016914 Sechium edule HOM05D004931 ORTHO05D006579 7.3e-82 308.1 215 71.2
AagrBONN_evm.TU.Sc2ySwM_26.3 Anthoceros agrestis HOM05D004931 ORTHO05D006579 1.6e-81 307.0 227 65.6
Lalb_Chr15g0090151 Lupinus albus HOM05D004931 ORTHO05D006579 8.1e-81 304.7 204 72.5
Pp3c6_24540 Physcomitrium patens HOM05D004931 ORTHO05D006579 4.0e-80 302.4 250 60.0
PSO832G0491 Papaver somniferum HOM05D004931 ORTHO05D006579 1.7e-70 270.4 220 64.1
A07p11470 Brassica napus HOM05D004931 ORTHO05D006579 1.5e-58 230.7 304 46.4
Cre10.g441500 Chlamydomonas reinhardtii HOM05D004931 ORTHO05D006579 5.6e-58 228.8 284 43.3
BraA07t28936Z Brassica rapa HOM05D004931 ORTHO05D006579 2.8e-57 226.5 249 51.0
Eucgr.B03557 Eucalyptus grandis HOM05D004931 ORTHO05D006579 6.9e-48 195.3 123 76.4
Lalb_Chr18g0060061 Lupinus albus HOM05D004931 ORTHO05D006579 7.6e-47 191.8 122 76.2
PGSC0003DMG402006689 Solanum tuberosum HOM05D004931 ORTHO05D006579 2.1e-44 183.7 122 73.0
PRCOL_00001027 Prasinoderma coloniale HOM05D004931 ORTHO05D006579 3.6e-44 183.0 266 40.6
PGSC0003DMG401006689 Solanum tuberosum HOM05D004931 ORTHO05D006579 7.4e-42 175.3 158 58.2
Haze_27431 Corylus avellana HOM05D004931 ORTHO05D006579 9.7e-42 174.9 292 38.0
RcHm_v2.0_Chr7g0205601 Rosa chinensis HOM05D004931 ORTHO05D006579 1.1e-34 151.4 88 80.7
CBR_g45420 Chara braunii HOM05D000019 ORTHO05D000048 1.7e-33 147.5 139 57.6
PSO170G5257 Papaver somniferum HOM05D004650 ORTHO05D005715 2.2e-33 147.1 119 62.2
Sc17g0004710 Simmondsia chinensis HOM05D004931 ORTHO05D006579 8.0e-28 128.6 91 69.2
TPR.G382 Trifolium pratense HOM05D004931 ORTHO05D006579 3.9e-27 126.3 85 69.4
TPR.G19900 Trifolium pratense HOM05D004931 ORTHO05D006579 5.9e-23 112.5 109 56.9
ECA238G1930 Erigeron canadensis HOM05D000406 ORTHO05D006918 1.9e-21 107.5 76 69.7
Zm00001eb406040 Zea mays HOM05D004931 ORTHO05D006579 4.2e-21 106.3 287 28.6
Zm00001eb242070 Zea mays HOM05D004931 ORTHO05D037234 3.0e-19 100.1 275 30.5
Os02g0521600 Oryza sativa ssp. japonica HOM05D004931 ORTHO05D037234 2.6e-18 97.1 265 29.1
Os04g0652600 Oryza sativa ssp. japonica HOM05D004931 ORTHO05D299584 9.7e-18 95.1 216 29.2
Zm00001eb037020 Zea mays HOM05D004931 ORTHO05D006579 9.7e-18 95.1 67 67.2
FAN01G2784 Fragaria x ananassa HOM05D005362 ORTHO05D006895 1.6e-15 87.8 153 37.9
Zm00001eb406050 Zea mays HOM05D004931 ORTHO05D444756 2.0e-15 87.4 207 27.5
TPR.G399 Trifolium pratense HOM05D004931 ORTHO05D006579 2.7e-15 87.0 109 47.7
BolC2t10441H Brassica oleracea HOM05D004931 ORTHO05D027277 3.2e-13 80.1 73 54.8
Solyc03g059395.1 Solanum lycopersicum HOM05D004931 ORTHO05D006579 6.1e-12 75.9 51 64.7
C01p27720 Brassica napus HOM05D004931 ORTHO05D027277 3.0e-11 73.6 67 52.2
Cre06.g253755 Chlamydomonas reinhardtii HOM05D018811 ORTHO05D145199 3.0e-11 73.6 324 24.4
Cre06.g253459 Chlamydomonas reinhardtii HOM05D018811 ORTHO05D146359 4.0e-11 73.2 324 24.4
TPR.G27432 Trifolium pratense HOM05D004931 ORTHO05D006579 5.2e-11 72.8 83 48.2
Lalb_Chr18g0060051 Lupinus albus HOM05D004931 ORTHO05D006579 8.8e-11 72.0 47 68.1
BcaC03g16580 Brassica carinata HOM05D004931 ORTHO05D027277 4.1e-08 63.2 57 54.4
Os02g0513800 Oryza sativa ssp. japonica HOM05D023198 ORTHO05D294263 7.0e-08 62.4 234 23.1
Sopen03g014100 Solanum pennellii HOM05D004931 ORTHO05D006579 1.2e-07 61.6 41 68.3
BcaB03g12135 Brassica carinata HOM05D004931 ORTHO05D006579 1.3e-06 58.2 79 46.8


User provided reference genes

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