Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR083G2790 Punica granatum HOM05D005035 ORTHO05D006141 1.7e-81 305.8 146 100.0
CiPaw.03G034300 Carya illinoinensis HOM05D005035 ORTHO05D006141 7.6e-69 263.8 149 86.6
Eucgr.J02172 Eucalyptus grandis HOM05D005035 ORTHO05D006141 9.9e-69 263.5 147 87.8
Nn4g22913 Nelumbo nucifera HOM05D005035 ORTHO05D006141 1.4e-67 259.6 146 82.9
Cfa007472 Carpinus fangiana HOM05D005035 ORTHO05D006141 9.3e-67 256.9 149 83.9
GSVIVG01032540001 Vitis vinifera HOM05D005035 ORTHO05D006141 1.0e-65 253.4 148 84.5
Glyma.13G069100 Glycine max HOM05D005035 ORTHO05D006141 1.3e-65 253.1 146 81.5
Lalb_Chr21g0319261 Lupinus albus HOM05D005035 ORTHO05D006141 1.3e-65 253.1 146 80.8
CANSAT21G0423 Cannabis sativa HOM05D005035 ORTHO05D006141 1.7e-65 252.7 147 82.3
Lalb_Chr06g0176451 Lupinus albus HOM05D005035 ORTHO05D006141 2.3e-65 252.3 146 79.5
MD09G1039900 Malus domestica HOM05D005035 ORTHO05D006141 5.1e-65 251.1 144 83.3
Phvul.004G020500 Phaseolus vulgaris HOM05D005035 ORTHO05D006141 6.6e-65 250.8 146 79.5
FvH4_6g50060 Fragaria vesca HOM05D005035 ORTHO05D006141 8.7e-65 250.4 146 82.2
FAN05G0554 Fragaria x ananassa HOM05D005035 ORTHO05D006141 8.7e-65 250.4 145 82.1
MELO3C021510.2 Cucumis melo HOM05D005035 ORTHO05D006141 1.1e-64 250.0 146 81.5
Glyma.19G013800 Glycine max HOM05D005035 ORTHO05D006141 1.9e-64 249.2 146 80.1
CsaV3_5G037480 Cucumis sativus L. HOM05D005035 ORTHO05D006141 2.5e-64 248.8 146 81.5
Lj2g0024232 Lotus japonicus HOM05D005035 ORTHO05D006141 2.5e-64 248.8 146 81.5
Gohir.A07G217600 Gossypium hirsutum HOM05D005035 ORTHO05D006141 3.3e-64 248.4 148 80.4
Manes.17G120300 Manihot esculenta HOM05D005035 ORTHO05D006141 3.3e-64 248.4 150 81.3
TAR371G0568 Trochodendron aralioides HOM05D005035 ORTHO05D006141 3.3e-64 248.4 146 82.2
Ca_04227_v3 Cicer arietinum L. HOM05D005035 ORTHO05D006141 5.6e-64 247.7 146 80.8
Manes.15G180500 Manihot esculenta HOM05D005035 ORTHO05D006141 5.6e-64 247.7 150 81.3
Lalb_Chr02g0159811 Lupinus albus HOM05D005035 ORTHO05D006141 7.3e-64 247.3 146 80.1
vmacro05790 Vaccinium macrocarpon HOM05D005035 ORTHO05D006141 9.6e-64 246.9 145 80.0
MBI14_g12780_MAGBIO Magnolia biondii HOM05D005035 ORTHO05D006141 1.3e-63 246.5 147 81.0
TAR484G0003 Trochodendron aralioides HOM05D005035 ORTHO05D006141 1.3e-63 246.5 146 80.8
TAR629G3150 Trochodendron aralioides HOM05D005035 ORTHO05D006141 1.3e-63 246.5 146 80.8
RcHm_v2.0_Chr2g0170331 Rosa chinensis HOM05D005035 ORTHO05D006141 1.6e-63 246.1 146 80.8
Gohir.D07G224700 Gossypium hirsutum HOM05D005035 ORTHO05D006141 2.1e-63 245.7 148 79.7
Medtr6g008220 Medicago truncatula HOM05D005035 ORTHO05D006141 2.1e-63 245.7 146 80.8
PSO591G0214 Papaver somniferum HOM05D005035 ORTHO05D006141 2.1e-63 245.7 146 79.5
TPR.G31460 Trifolium pratense HOM05D005035 ORTHO05D006141 2.1e-63 245.7 146 80.1
Prupe.3G278500 Prunus persica HOM05D005035 ORTHO05D006141 4.8e-63 244.6 146 80.1
Gohir.A09G024500 Gossypium hirsutum HOM05D005035 ORTHO05D006141 6.2e-63 244.2 146 79.5
PSO832G3976 Papaver somniferum HOM05D005035 ORTHO05D006141 6.2e-63 244.2 146 79.5
CSS0048749 Camellia sinensis var. sinensis HOM05D005035 ORTHO05D006141 3.1e-62 241.9 146 81.5
Thecc.04G003200 Theobroma cacao HOM05D005035 ORTHO05D006141 3.1e-62 241.9 148 79.1
Duzib147G0557 Durio zibethinus HOM05D005035 ORTHO05D006141 6.9e-62 240.7 148 79.1
MD17G1040500 Malus domestica HOM05D005035 ORTHO05D006141 6.9e-62 240.7 146 78.8
Actinidia06042 Actinidia chinensis HOM05D005035 ORTHO05D006141 9.0e-62 240.4 145 79.3
Ciclev10013034m.g Citrus clementina HOM05D005035 ORTHO05D006141 1.2e-61 240.0 149 79.2
TWI56G1217 Tripterygium wilfordii HOM05D005035 ORTHO05D006141 1.5e-61 239.6 124 88.7
Migut.H00159 Erythranthe guttata HOM05D005035 ORTHO05D006141 2.6e-61 238.8 147 80.3
Sp2g17120 Schrenkiella parvula HOM05D005035 ORTHO05D006141 3.4e-61 238.4 146 78.1
Sc06g0002600 Simmondsia chinensis HOM05D005035 ORTHO05D006141 4.5e-61 238.0 146 80.8
Migut.K01356 Erythranthe guttata HOM05D005035 ORTHO05D006141 5.8e-61 237.7 141 80.9
Potri.001G350900 Populus trichocarpa HOM05D005035 ORTHO05D006141 5.8e-61 237.7 144 79.2
TWI36G0797 Tripterygium wilfordii HOM05D005035 ORTHO05D006141 7.6e-61 237.3 124 87.1
Aqoxy3G00882 Aquilegia oxysepala HOM05D005035 ORTHO05D006141 1.3e-60 236.5 119 90.8
HanXRQChr17g0548081 Helianthus annuus HOM05D005035 ORTHO05D006141 1.3e-60 236.5 144 78.5
MSTRG.3309 Avicennia marina HOM05D005035 ORTHO05D006141 1.7e-60 236.1 148 78.4
CAN.G206.60 Capsicum annuum HOM05D005035 ORTHO05D006141 2.2e-60 235.7 147 76.2
Cc07_g02630 Coffea canephora HOM05D005035 ORTHO05D006141 2.2e-60 235.7 146 78.1
ECA246G3539 Erigeron canadensis HOM05D005035 ORTHO05D006141 2.9e-60 235.3 138 81.2
THA.LOC104805419 Tarenaya hassleriana HOM05D005035 ORTHO05D006141 2.9e-60 235.3 148 78.4
Lsat_1_v5_gn_0_16560 Lactuca sativa HOM05D005035 ORTHO05D006141 4.9e-60 234.6 144 78.5
Solyc02g087230.3 Solanum lycopersicum HOM05D005035 ORTHO05D006141 6.4e-60 234.2 148 75.0
Sopen02g031970 Solanum pennellii HOM05D005035 ORTHO05D006141 6.4e-60 234.2 148 75.0
SGA_v2.0_scaffold30G12503 Striga asiatica HOM05D005035 ORTHO05D006141 1.1e-59 233.4 130 84.6
Peaxi162Scf00129g00821 Petunia axillaris HOM05D005035 ORTHO05D006141 1.9e-59 232.6 146 77.4
Thhalv10027982m.g Eutrema salsugineum HOM05D005035 ORTHO05D006141 2.4e-59 232.3 148 77.0
Aa31LG9G1530 Aethionema arabicum HOM05D005035 ORTHO05D006141 3.2e-59 231.9 142 78.2
AL3G42320 Arabidopsis lyrata HOM05D005035 ORTHO05D006141 3.2e-59 231.9 149 75.8
AT2G04700 Arabidopsis thaliana HOM05D005035 ORTHO05D006141 3.2e-59 231.9 149 75.8
Nitab4.5_0007185g0060 Nicotiana tabacum HOM05D005035 ORTHO05D006141 3.2e-59 231.9 147 76.9
Sabra16G0230300 Salix brachista HOM05D005035 ORTHO05D006141 3.2e-59 231.9 120 90.0
Actinidia33975 Actinidia chinensis HOM05D005035 ORTHO05D006141 4.2e-59 231.5 148 75.7
Carub.0003s2630 Capsella rubella HOM05D005035 ORTHO05D006141 4.2e-59 231.5 149 75.2
ClCG00G001700 Citrullus lanatus HOM05D005035 ORTHO05D006141 4.2e-59 231.5 175 66.9
ClCG09G018640 Citrullus lanatus HOM05D005035 ORTHO05D006141 4.2e-59 231.5 175 66.9
Nitab4.5_0001952g0210 Nicotiana tabacum HOM05D005035 ORTHO05D006141 4.2e-59 231.5 147 76.9
Psat1g079560 Pisum sativum HOM05D005035 ORTHO05D006141 4.2e-59 231.5 133 82.0
Rhsim10G0028700 Rhododendron simsii HOM05D005035 ORTHO05D006141 5.4e-59 231.1 154 72.7
EL10Ac7g18004 Beta vulgaris HOM05D005035 ORTHO05D006141 7.1e-59 230.7 148 73.0
DCAR_011194 Daucus carota HOM05D005035 ORTHO05D006141 7.1e-59 230.7 147 76.2
Thhalv10005082m.g Eutrema salsugineum HOM05D005035 ORTHO05D006141 7.1e-59 230.7 148 74.3
Sp7g01920 Schrenkiella parvula HOM05D005035 ORTHO05D006141 7.1e-59 230.7 148 75.7
CDE04G0448 Ceratophyllum demersum HOM05D005035 ORTHO05D006141 1.2e-58 229.9 146 74.0
FAN09G0974 Fragaria x ananassa HOM05D005035 ORTHO05D006141 1.2e-58 229.9 137 78.8
FAN14G3542 Fragaria x ananassa HOM05D005035 ORTHO05D006141 1.2e-58 229.9 137 78.8
FAN02G1276 Fragaria x ananassa HOM05D005035 ORTHO05D006141 1.6e-58 229.6 137 78.8
Sed0002098 Sechium edule HOM05D005035 ORTHO05D006141 2.7e-58 228.8 131 80.9
Duzib264G0892 Durio zibethinus HOM05D005035 ORTHO05D006141 3.5e-58 228.4 137 79.6
MSTRG.23981 Avicennia marina HOM05D005035 ORTHO05D006141 6.0e-58 227.6 148 77.7
Rhsim10G0028000 Rhododendron simsii HOM05D005035 ORTHO05D006141 6.0e-58 227.6 163 68.7
A04p12970 Brassica napus HOM05D005035 ORTHO05D006141 1.3e-57 226.5 140 77.1
BcaB06g27429 Brassica carinata HOM05D005035 ORTHO05D006141 1.8e-57 226.1 140 76.4
BolC4t26254H Brassica oleracea HOM05D005035 ORTHO05D006141 1.8e-57 226.1 144 74.3
BraA04t16958Z Brassica rapa HOM05D005035 ORTHO05D006141 1.8e-57 226.1 140 76.4
Gorai.001G259100 Gossypium raimondii HOM05D005035 ORTHO05D006141 1.8e-57 226.1 133 80.5
COL.COLO4_06152 Corchorus olitorius HOM05D005035 ORTHO05D006141 2.3e-57 225.7 134 79.9
SalBow1G8037 Salvia bowleyana HOM05D005035 ORTHO05D006141 2.3e-57 225.7 156 73.1
Lsat_1_v5_gn_4_180660 Lactuca sativa HOM05D005035 ORTHO05D006141 6.7e-57 224.2 147 75.5
HPP92_003737 Vanilla planifolia HOM05D005035 ORTHO05D006141 1.1e-56 223.4 146 72.6
QL93p0205_0142 Quercus lobata HOM05D005035 ORTHO05D006141 4.3e-56 221.5 160 68.1
AagrBONN_evm.TU.Sc2ySwM_340.374 Anthoceros agrestis HOM05D005035 ORTHO05D006141 1.3e-55 219.9 129 79.1
Mapoly0037s0068 Marchantia polymorpha HOM05D005035 ORTHO05D006141 1.3e-55 219.9 140 72.9
Hma1.2p1_0375F.1_g139040 Hydrangea macrophylla HOM05D005035 ORTHO05D006141 1.4e-54 216.5 144 70.1
VMungo0464G2121 Vigna mungo HOM05D005035 ORTHO05D006141 1.4e-54 216.5 227 52.9
unitig_52.g17602 Utricularia gibba HOM05D005035 ORTHO05D006141 2.6e-53 212.2 127 80.3
SMO147G0038 Selaginella moellendorffii HOM05D005035 ORTHO05D006141 4.5e-53 211.5 112 83.0
Hund20034 Selenicereus undatus HOM05D005035 ORTHO05D006141 5.8e-53 211.1 135 74.1
unitig_62.g23432 Utricularia gibba HOM05D005035 ORTHO05D006141 5.8e-53 211.1 127 80.3
Zm00001eb373700 Zea mays HOM05D005035 ORTHO05D006141 5.8e-53 211.1 142 71.8
ATR1101G065 Amborella trichopoda HOM05D005035 ORTHO05D006141 2.2e-52 209.1 116 82.8
Os09g0249900 Oryza sativa ssp. japonica HOM05D005035 ORTHO05D006141 2.2e-52 209.1 135 72.6
AUR62041855 Chenopodium quinoa HOM05D005035 ORTHO05D006141 1.2e-50 203.4 149 67.1
Cre03.g193950 Chlamydomonas reinhardtii HOM05D005035 ORTHO05D006141 2.7e-50 202.2 129 70.5
Pp3c3_28450 Physcomitrium patens HOM05D005035 ORTHO05D006141 3.5e-50 201.8 132 71.2
Haze_14625 Corylus avellana HOM05D005035 ORTHO05D006141 4.6e-50 201.4 157 68.8
Pp3c4_19340 Physcomitrium patens HOM05D005035 ORTHO05D006141 4.6e-50 201.4 114 78.1
THA.LOC104822811 Tarenaya hassleriana HOM05D005035 ORTHO05D006141 7.9e-50 200.7 105 85.7
CSS0001095 Camellia sinensis var. sinensis HOM05D005035 ORTHO05D006141 5.6e-48 194.5 147 68.7
AUR62022118 Chenopodium quinoa HOM05D005035 ORTHO05D006141 1.3e-47 193.4 104 80.8
MCO16G017 Micromonas commoda HOM05D005035 ORTHO05D006141 2.8e-47 192.2 118 69.5
arahy.Tifrunner.gnm1.ann1.JZED56 Arachis hypogaea HOM05D005035 ORTHO05D006141 3.7e-47 191.8 149 67.1
AUR62001211 Chenopodium quinoa HOM05D005035 ORTHO05D006141 3.7e-47 191.8 104 79.8
PRCOL_00001533 Prasinoderma coloniale HOM05D005035 ORTHO05D006141 4.8e-47 191.4 136 66.2
CSS0000898 Camellia sinensis var. sinensis HOM05D005035 ORTHO05D006141 1.4e-46 189.9 151 66.9
Gorai.006G028000 Gossypium raimondii HOM05D005035 ORTHO05D006141 5.8e-45 184.5 111 80.2
arahy.Tifrunner.gnm1.ann1.IKM8ZR Arachis hypogaea HOM05D005035 ORTHO05D006141 2.2e-44 182.6 112 80.4
CBR_g4436 Chara braunii HOM05D005035 ORTHO05D006141 3.2e-43 178.7 89 85.4
CARHR102650 Cardamine hirsuta HOM05D005035 ORTHO05D006141 1.1e-40 170.2 114 74.6
Atru.chr8.2413 Acer truncatum HOM05D005035 ORTHO05D006141 1.6e-39 166.4 152 60.5
SEGI_15320 Sequoiadendron giganteum HOM05D005035 ORTHO05D006141 6.3e-39 164.5 84 91.7
AUR62032082 Chenopodium quinoa HOM05D005035 ORTHO05D006141 1.5e-37 159.8 93 78.5
Nn3g17009 Nelumbo nucifera HOM05D005035 ORTHO05D006141 1.3e-36 156.8 100 78.0
QL02p078168 Quercus lobata HOM05D005035 ORTHO05D006141 6.5e-36 154.5 78 83.3
Gohir.D09G023800 Gossypium hirsutum HOM05D005035 ORTHO05D006141 6.5e-28 127.9 86 75.6
AUR62026990 Chenopodium quinoa HOM05D005035 ORTHO05D006141 1.9e-27 126.3 104 58.7
Rhsim08G0061500 Rhododendron simsii HOM05D005035 ORTHO05D006141 7.9e-26 120.9 64 82.8
C04p46660 Brassica napus HOM05D005035 ORTHO05D006141 3.0e-25 119.0 61 80.3
BcaB02g11482 Brassica carinata HOM05D005035 ORTHO05D006141 5.5e-19 98.2 49 79.6
BcaC04g21225 Brassica carinata HOM05D005035 ORTHO05D006141 9.4e-19 97.4 51 84.3
vmacro18227 Vaccinium macrocarpon HOM05D005035 ORTHO05D006141 9.4e-19 97.4 74 71.6
Oeu031509.1 Olea europaea HOM05D005035 ORTHO05D006141 1.4e-17 93.6 43 86.0
QL02p078176 Quercus lobata HOM05D005035 ORTHO05D006141 2.8e-15 85.9 65 69.2
CSS0035672 Camellia sinensis var. sinensis HOM05D005035 ORTHO05D006141 1.8e-14 83.2 52 69.2
Nn1g06334 Nelumbo nucifera HOM05D005035 ORTHO05D006141 9.4e-11 70.9 38 86.8
CSS0020716 Camellia sinensis var. sinensis HOM05D005035 ORTHO05D006141 2.1e-10 69.7 40 72.5
CSS0048463 Camellia sinensis var. sinensis HOM05D005035 ORTHO05D006141 3.6e-10 68.9 49 67.3
CARHR102660 Cardamine hirsuta HOM05D005035 ORTHO05D006141 1.8e-09 66.6 42 69.0
CSS0011814 Camellia sinensis var. sinensis HOM05D005035 ORTHO05D006141 1.4e-06 57.0 30 73.3
Dinv33674 Davidia involucrata HOM05D005035 ORTHO05D006141 1.4e-06 57.0 46 63.0


User provided reference genes

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